BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G16720.1
Length=1390
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479140 jgi|Araly1|479140|fgenesh2_kg.3__1841__AT3G16720.1 1526 0.0
> Ahg479140 jgi|Araly1|479140|fgenesh2_kg.3__1841__AT3G16720.1
Length=1280
Score = 1526 bits (826), Expect = 0.0
Identities = 1004/1087 (92%), Gaps = 24/1087 (2%)
Strand=Plus/Plus
Query 16 TCTGCACTTTCTCACGAACCTCTCTGTCTCGTCCATTACTTAAAAACCAAATCTTTCATC 75
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 TCTGCACTTTCTCACGAACCTCTCTGTCTCGTCCATTACTTCAAAACCAAATCTTTCATC 60
Query 76 A------TCTTC---CTTCACCAGTTGACTCTCTTTCAATCTATCTCTGAATCTCTC--A 124
| ||||| |||||||||||||||||||||| ||| ||||| |||||||| |
Sbjct 61 ATCTTCTTCTTCTTTCTTCACCAGTTGACTCTCTTTCTATC--TCTCTCAATCTCTCTGA 118
Query 125 CTCTCCT-ACCCGAAAACCATGAACTCCAACGACCAGGATCCGATT-CCGTT--CAGACC 180
||| || || | ||||||||| ||||||||| |||||||||| || || ||||||
Sbjct 119 ATCT-CTCACTC-TCCACCATGAACACCAACGACCCGGATCCGATTCCCTTTAACAGACC 176
Query 181 CGAAGACAACAACTTCTCCGGTTCCAAAACCTACGCCATGAGCGGCAAAATCATGCTAAG 240
||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 177 CGAAG---ACAACTTCTCCGGTTCCAAAACCTACGCAATGAGCGGCAAAATCATGCTAAG 233
Query 241 TGCAATAGTAATCCTCTTCTTCGTCGTCATTTTAATGGTCTTCCTCCATCTTTACGCTCG 300
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 234 CGCTATAGTAATCCTCTTCTTCGTCGTCATTTTAATGGTCTTCCTCCATCTTTACGCTCG 293
Query 301 TTGGTATCTCCTCCGTGCTCGTAGACGTCATCTCCGTCGTCGTAGCCGTAACCGTCGCGC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 294 TTGGTATCTCCTCCGTGCTCGTAGACGTCATCTCCGTCGTCGTAGCCGTAACCGTCGCGC 353
Query 361 TACGATGGTTTTCTTCACCGCTGATCCTTCCACCGCCGCAACTTCCGTCGTCGCTTCACG 420
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 354 TACGATGGTTTTCTTCACCGCTGATCCTTCCACCGCCGCTACCTCCGTCGTCGCTTCACG 413
Query 421 TGGACTTGATCCAAACGTTATTAAATCTCTTCCTGTTTTCACTTTCTCCGACGAGACTCA 480
|||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||
Sbjct 414 TGGACTTGATCCAAACGTGATTAAATCTCTTCCCGTTTTCACTTTCTCCGATGAGACTCA 473
Query 481 TAAAGATCCGATCGAATGCGCCGTTTGTTTATCGGAATTCGAAGAGAGCGAGACGGGTCG 540
|||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||
Sbjct 474 TAAAGATCCGATCGAATGCGCCGTTTGTTTGTCGGAATTCGAAGAGAGTGAAACGGGTCG 533
Query 541 GGTTTTGCCCAATTGTCAACATACTTTTCATGTTGATTGTATTGATATGTGGTTTCATTC 600
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 GGTTTTGCCCAATTGTAAACATACTTTTCATGTTGATTGTATTGATATGTGGTTTCATTC 593
Query 601 TCATTCCACTTGTCCTCTTTGTCGATCTCTCGTTGAGTCTCTCGCCGGGATTGAATCAAC 660
|||||||||||||||||||||||| |||||||||||| |||||||||| ||||||| ||
Sbjct 594 TCATTCCACTTGTCCTCTTTGTCGCTCTCTCGTTGAGCCTCTCGCCGGAATTGAATTAAT 653
Query 661 GGCGGCGGCGAGGGAGAGGGAAGTTGTGATTGCGGTTGATTCTGATCCGGTTT-TGGTAA 719
|| |||| ||| |||| ||||||||||||||||| |||||||||| ||||||| || ||
Sbjct 654 GGAGGCGACGACGGAGGGGGAAGTTGTGATTGCGATTGATTCTGACCCGGTTTCTGC-AA 712
Query 720 TTGAACCGAGTTCTAGCTCTGGATTGACGGATGAACCACATGGATCTGGATCTTCTCAGA 779
|||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 713 TTGAACCGGGTTCTAGCTCTGGATTGAGGGATGAACCACATGGATCTGGATCTTCTCTGA 772
Query 780 TGCTGAGGGAAGATTCCGGGAGAAAACCGGCGGCGATTGAGGTTCCGAGGAGGACTTTTA 839
|| || |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 773 CGCCGATTGAAGATTCCGGGAGAAAACCGGCGGCGATTGAGGTTCCGAGGAGGAATTTCC 832
Query 840 GCGAGTTTGAAGATGAGTTGACTCGGAGAGACTCGCCGGCGAGTCAGTCGTTTAGGTCTC 899
||||||| |||||||| |||||||||||||||||||||||||||||||||||||| || |
Sbjct 833 GCGAGTTGGAAGATGAATTGACTCGGAGAGACTCGCCGGCGAGTCAGTCGTTTAGATCGC 892
Query 900 CGATGAGTCGGATGTTATCTTTCACTCGGATGTTGAGTAGAGATAGAAGAAGCGCTTCGT 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 893 CGATGAGTCGGATGTTATCTTTCACTCGGATGTTGAGTAGAGATAGAAGAAGCGCTTCGT 952
Query 960 CTCCTATCGCCGGAGCTCCGCCGCTATCGCCGACGTTAAGCTGCCGGATACAGATGACCG 1019
||||||||||||||||||||||| |||| ||| |||| || |||||||||||||||||||
Sbjct 953 CTCCTATCGCCGGAGCTCCGCCGGTATCTCCGTCGTTGAGTTGCCGGATACAGATGACCG 1012
Query 1020 AGTCAGATATCGAACGGGGAGGAGAAGAGAGTAGGTGACTTGTCACGTGTTGGTGTCTGA 1079
||||||||||||| | |||||||||||| ||||||||||||| |||||| ||||||||||
Sbjct 1013 AGTCAGATATCGAGCAGGGAGGAGAAGACAGTAGGTGACTTGCCACGTGGTGGTGTCTGA 1072
Query 1080 TTGGTTT 1086
|||||||
Sbjct 1073 TTGGTTT 1079
Score = 52.8 bits (28), Expect = 7e-06
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 1349 ACAATCCAATGGTCATAATTGTGATAAA 1376
||||||||||||||||||||||||||||
Sbjct 1253 ACAATCCAATGGTCATAATTGTGATAAA 1280
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51955094180
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5