BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G16740.1
Length=1494
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479142 jgi|Araly1|479142|fgenesh2_kg.3__1843__AT3G16740.1 1784 0.0
Ahg904694 jgi|Araly1|904694|Al_scaffold_0003_1822 294 1e-78
Ahg472870 jgi|Araly1|472870|fgenesh2_kg.1__2824__AT1G25141.1 87.9 2e-16
> Ahg479142 jgi|Araly1|479142|fgenesh2_kg.3__1843__AT3G16740.1
Length=1369
Score = 1784 bits (966), Expect = 0.0
Identities = 1175/1276 (92%), Gaps = 14/1276 (1%)
Strand=Plus/Plus
Query 122 ATTACAGATTCGATTCGAAACTATGGTTCAGATTTCCGATCTTCCACGGGATTTGACAGA 181
|||| |||||||||||||||| ||| | ||||||| |||||||||||||||||||||||
Sbjct 47 ATTAGAGATTCGATTCGAAACAATGACTAAGATTTCGGATCTTCCACGGGATTTGACAGA 106
Query 182 GGAGGTGCTCTCTAGGATTCCGGTGACATCTATGAGAGCAGTGAGATTTACTTGCAAAAA 241
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 107 GGAGGTGCTCTCTAGGCTTCCGGTGACATCTATGAGAGCAGTGCGATTTACTTGCAAAAA 166
Query 242 GTGGAACACCTTATCGAAAGATCGGAGCTTTACAAAGAAGCACCTGCGTGGAGCAAGAGC 301
||||| | |||||||||||||||||||||| ||||||||||||||||||||||| | |
Sbjct 167 TTGGAATAGTTTATCGAAAGATCGGAGCTTTAGAAAGAAGCACCTGCGTGGAGCAATATC 226
Query 302 AGCAGCAAAGAAGAAGCAGACGAAGGAGTTTCAGGTGATCATGATGATTCAATTTAGGGT 361
|||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 227 AGCAGCGAAGAAGAAGCAGACGAAGGAGTTTCAGGTGATCATGATGATTCAATATAGGGT 286
Query 362 TTATTTATACAGCGTCAACCTCCTTAATCCATCAATAGAGCGTATAGGTAAACTTATTAG 421
|||||||| ||||||||| ||||| |||||||| ||||||||||||||||||||||||||
Sbjct 287 TTATTTATTCAGCGTCAATCTCCTCAATCCATCTATAGAGCGTATAGGTAAACTTATTAG 346
Query 422 CCTAGACGTTGAAGATCATGTCGACATATCTAAAATCTTTCACTGCGGCGGTTTATTGTT 481
||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||
Sbjct 347 CCTAGACGTTGAAGATCGTGTCGATATATCTAAAATCTTTCACTGCCACGGTTTATTGTT 406
Query 482 ATGTATCACCAAAGACATATCTAGGCTTGTGGTTTGGAACCCTTATTCTGGGCAAACAAG 541
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 407 ATGCATCACCAAAGACATATCTAGGCTTGTGGTTTGGAACCCTTACTCTGGGCAAACTAG 466
Query 542 GTGGATCAAACCTAGAAATTCTTACCACAGATTGGACAGGTACGCTTTAGGATACGAAGA 601
||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 467 GTGGATCCAACCTAGAAATTCTTACCACAGATTGGACAGGTACGCTTTAGGATATGAAGA 526
Query 602 GAAGAACAAGTCGTGTCGTTGCTACAAAATCTTGAGATTTATGGATGATTACGAGGATGA 661
||||||||| || |||||| |||||||||||||||||||||||||| ||||| ||| ||
Sbjct 527 GAAGAACAATTCATGTCGTAGCTACAAAATCTTGAGATTTATGGATAATTACCAGGGCGA 586
Query 662 CAGGGCACTGCGCCTAATTCGTGAGTTTGAAATCTACGACTTAAACTCTGATTCATGGAA 721
|| ||| | |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 587 CAACCCACCGTACCTAGTTCGTGAGTTTGAAATCTACGACTTAAACTCTGATTCATGGAA 646
Query 722 GGTTGTTAATGTCACTCCCGACTGGGATGTAGAGTTTTATCACCGTGGCCTGTCTCTCAA 781
||||||| ||||| |||| |||||||| |||||| ||||||||||||| ||||||||||
Sbjct 647 GGTTGTTGATGTCCCTCCTGACTGGGAAATAGAGTATTATCACCGTGGCTTGTCTCTCAA 706
Query 782 GGGGAATACTTACTGGTTTGCTCAAGAGAAGCTTCCACCATTACCACGCGGAAGAGTGAT 841
||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||| |
Sbjct 707 GGGGAATACTTACTGGTTTGCTCAAGAGAAGCTTCCAATATTCCCACTCGGAAGAGTGGT 766
Query 842 AACAATATCAGATATGGCTGATTTCTTACTCTGTTTTGATTTTACAAGGGAGAGATTTGG 901
| | |||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 767 A----T--CAGATATGGCTGATTTCTTACTCTGTTTTGATTTTACAAGGGAGAGGTTTGG 820
Query 902 ACCGCGCCTGCCTCTGCCTTTCCACTCTTTTGTTGAAGATACTGTGACTCTATCCAGTGT 961
|||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 821 ACCGCGTCTGCCTCTGCCTTTTCACTCTTTTGTTGAAGATACTGTGACTCTATCTAGTGT 880
Query 962 TAGAGATAAGAAACTTGCAGTGTTATTTCAGCCATGT-AGTGCATCTACCGTGAAGATAT 1020
|||||||||| |||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 881 TAGAGATAAGCAACTTGCAGTGTTATTTCAGCCATGTTA-TGCATCTACCGTGAAGATAT 939
Query 1021 GGATTAGTCGCAAGATTGAGCCCAATGCAGTGTCGTGGAGGAAGGTTTTCTTAGCGGTTG 1080
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 940 GGATTAGTAGCAAGATTGAGCCCAATGCAGTGTCGTGGAGGAAGGTTTTCTTAGCGGTTG 999
Query 1081 ATATGAAATCACTCACTGGTTTTCAGTTTGACATTAACGCTGCAAGTTTCTTTGTTGACG 1140
|||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 1000 ATATGAAACCACTCACTGGTTTTCAGTTTGACATTAACTCTGGGAGTTTCTTTGTTGACC 1059
Query 1141 AGAAGAAAAAGGTCGCCATGGTTCTGGATAAAGACAGGTTCAGTTATAAATTTACTCGCA 1200
||||||||||||||||||||||||| ||||||||||| ||||| | |||||| |||||||
Sbjct 1060 AGAAGAAAAAGGTCGCCATGGTTCTTGATAAAGACAGATTCAGATCTAAATTAACTCGCA 1119
Query 1201 ACATAGCTTACATCATTGGGAAGAAGGGGTACTTCGAAAAAG-TGGATCTTGGAGAATCT 1259
||||||||||||||||||| ||||||||||| ||| |||||| |||||||||||||||||
Sbjct 1120 ACATAGCTTACATCATTGGAAAGAAGGGGTATTTC-AAAAAGGTGGATCTTGGAGAATCT 1178
Query 1260 ACAGTTTCAAGTTGTGCCTCACTTGTGTGCTCTTACGTTCCAAGCTCAGTGCAAATCTAG 1319
||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1179 ACAGTGCCATCTTGTGCCTCACTTGTGTGCTCTTACGTTCCAAGCTCAACGCAAATCTAG 1238
Query 1320 CAAGCTTCACCACGAGGCAACCAA-TCGATTCAATTGTTTT-CTTTTCTTATGTATCTGA 1377
||||||||||||||||||||||| | | || | | ||||| ||||||| |||||| |||
Sbjct 1239 CAAGCTTCACCACGAGGCAACCACGTTGTTT-ACT-GTTTTTCTTTTCTCATGTATTTGA 1296
Query 1378 TTTGTCTTGGAGATTT 1393
|| |||||||||||||
Sbjct 1297 TTGGTCTTGGAGATTT 1312
> Ahg904694 jgi|Araly1|904694|Al_scaffold_0003_1822
Length=1077
Score = 294 bits (159), Expect = 1e-78
Identities = 416/532 (78%), Gaps = 50/532 (9%)
Strand=Plus/Plus
Query 151 AGATTTCCGATCTTCC-ACGGGATTTGACAGAGGAGGTGCTCTCTAGGATTCCGGTGACA 209
|||||||||||||||| | |||||||| |||||||||||||||||||| |||| || |||
Sbjct 8 AGATTTCCGATCTTCCTA-GGGATTTGGCAGAGGAGGTGCTCTCTAGGGTTCCAGTTACA 66
Query 210 TCTATGAGAGCAGTGA-GATTTACTTGCAAAAAGTGGAACACCTTATCGAAAGATCGGAG 268
||| |||||||||| | ||||||||||||||||||||||||| ||| | ||| |||||||
Sbjct 67 TCTCTGAGAGCAGT-ACGATTTACTTGCAAAAAGTGGAACACTTTAACTAAACATCGGAG 125
Query 269 CTTTACAAAGAAGCACCTGCGTGGAGCAAGAGCAGCAGCAAAGAAGAAGCAGACGAAGGA 328
|||||||||||||| | || ||||| ||||| | |||||||||||||| |||||||
Sbjct 126 CTTTACAAAGAAGCTGGTTTGTCAAGCAAAAGCAGAACCAAAGAAGAAGCAGGCGAAGGA 185
Query 329 GTTTCAGGTGATCATGATGATTCAATT-TAGGGTTTAT-T--T-A---T--A-C-AG-CG 375
|||||| | |||||||| || | |||| || ||||||| | | | | | | || |
Sbjct 186 GTTTCATGCGATCATGACGA-TGAATTATAAGGTTTATCTGATGAGCGTCAATCTAGATG 244
Query 376 ----T--C-AACCT--C--C-TT-AATCCATCAATAGAGC-GTATAGGTAAACTTATTAG 421
| | || | | | || ||| |||| ||| ||| | | |||||||||||||||
Sbjct 245 AAATTCACAAAGATGACAACGTTGAAT-CATCTATAAAGCAG-AAAGGTAAACTTATTAG 302
Query 422 CCTAGACGTTGAAGATC--ATGTCGACATATCTAAAATCTT-TCACTGCGGCGGTTTATT 478
|||| |||||| |||| || | |||||| || | || |||||| | ||||| ||
Sbjct 303 CCTAAACGTTGCTGATCGAAT-AAG-TATATCTCAAGT-TTGTCACTGTGATGGTTTGTT 359
Query 479 GTTATGTATCACCAAAGACATA-TCTAGGCTTGTGGTTTGGAACCCTTATTCTGGGCAAA 537
|||||| |||||||| |||| | |||||||||||||||||||||||||||||||||||||
Sbjct 360 GTTATGCATCACCAATGACA-ACTCTAGGCTTGTGGTTTGGAACCCTTATTCTGGGCAAA 418
Query 538 CAAGGTGGATCAAACCTAGAAATTCTTACCACAGATTGGAC-AG-----GTACGCTTTAG 591
|||| || || ||||| ||| ||||||| | |||| |||| | ||| ||| | |
Sbjct 419 CAAGAAGGGTCCAACCTCGAATTTCTTACAAGAGATGGGACTACTACAAGTATGCTCTCG 478
Query 592 GATACGAAGA-GAAGAACAAGTCGTGTCGTTGCTACAAAATCTTGAGATTTA 642
| ||||| || ||| ||||| || | |||| || ||||||| ||||||||||
Sbjct 479 GGTACGA-GATGAATAACAACTCTTATCGTAGCCACAAAATTTTGAGATTTA 529
> Ahg472870 jgi|Araly1|472870|fgenesh2_kg.1__2824__AT1G25141.1
Length=3192
Score = 87.9 bits (47), Expect = 2e-16
Identities = 88/108 (81%), Gaps = 2/108 (2%)
Strand=Plus/Plus
Query 861 GATTTCTTACTCTGTTTTGATTTTACAAGGGAGAGATTTGGACCGCGCCTGCCTCTGCC- 919
|||||||||||||||||||||||||||| |||| |||||| | ||| |||||||| ||
Sbjct 2572 GATTTCTTACTCTGTTTTGATTTTACAACAGAGACATTTGGTCTGCGTCTGCCTCTTCCG 2631
Query 920 TTTCCACTCTTTTGTTGAAGATACTGTGACTCTATCCAGTGTTAGAGA 967
|||| ||||| | | || | |||||||| || || | |||||||||
Sbjct 2632 TTTC-ACTCTACTATCGACGCGACTGTGACCCTCTCTAATGTTAGAGA 2678
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55916479660
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5