BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G16760.1
Length=1861
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929508 jgi|Araly1|929508|scaffold_301965.1 1070 0.0
> Ahg929508 jgi|Araly1|929508|scaffold_301965.1
Length=1467
Score = 1070 bits (579), Expect = 0.0
Identities = 621/642 (97%), Gaps = 0/642 (0%)
Strand=Plus/Plus
Query 1008 GCTTCGAAATCAAACACATTCTCATCAGGAGGTAGCTTCAATGCTTCAAACGTTGATTTT 1067
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 826 GCTTCGAAATCAAACACATTCTCATCAGGCGGTAGCTTCAATGCTTCAAACGTTGGTTTT 885
Query 1068 GGTGTGCAACCAAGTGGTCCACAATCTTCGAGTGCAAACGATGATCCATTAGGAATGTTC 1127
||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 886 GGTGTGCTACCAAGTGGTCCACAATCTTCAAGTGCAAACGATGATCCATTAGGAATGTTC 945
Query 1128 TCTAATTCCAAACCCTCAGCTGCACCACCTACGCCACAGACCGAAGATTGGGGATTTGAA 1187
|||| |||||||||| |||||||| | |||| |||||||| ||||||||||||||||||
Sbjct 946 TCTAGTTCCAAACCCACAGCTGCAGCGGCTACACCACAGACTGAAGATTGGGGATTTGAA 1005
Query 1188 AGTTTTGACGGTGGGGCTGGTTCCACCACCGAGCTTGATGGTTTGCCACCGCCTCCACCG 1247
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1006 AGTTTTGACGGTGGGGCTGGTTCCACCACCGAGCTTGATGGTTTGCCACCACCTCCACCG 1065
Query 1248 GGTGTATCAGCTACATCAGCTAAGAACAAGGGCATTGATAACCAGAGACAAGGTCAGTAT 1307
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1066 GGTGTATCAGCTACATCAGCTAAGAGCAAGGGCATTGATAACCAGAGACAAGGTCAGTAT 1125
Query 1308 GCTGATGCCATAAAGTGGCTCTCTTGGGCTGTGATTCTTATGGATAGAGCTGGTGATGAA 1367
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1126 GCTGATGCCATAAAGTGGCTCTCTTGGGCTGTGATTCTTATGGATAGAGCTGGCGATGAA 1185
Query 1368 GCTGGATCAGCCGAGGTTCTTTCAACAAGGGCTTCGTGTTACAAAGAAGTTGGAGAGTAT 1427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1186 GCTGGATCAGCCGAGGTTCTTTCAACAAGGGCTTCGTGTTACAAAGAAGTTGGAGAGTAT 1245
Query 1428 AAGAAAGCTGTAGCCGACTGCACAAAGGTACTTGATCACGACAAGAAGAATGTGACCATT 1487
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1246 AAGAAGGCTGTAGCCGACTGCACAAAGGTACTTGATCACGACAAGAAGAATGTGACCATT 1305
Query 1488 CTGGTTCAACGAGCACTGTTATACGAGAGCATGGAGAAATACAAACTCGGAGCTGAAGAC 1547
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1306 CTGGTTCAACGAGCACTTTTATACGAGAGCATGGAGAAATACAAACTCGGAGCTGAAGAC 1365
Query 1548 CTAAGGATGGTTCTAAAGATTGATCCCGGGAATAGAATCGCTAGAAGTACTGTTCACCGC 1607
|||||||||||||||||||| ||||||||||||||||| |||||||| || |||||||||
Sbjct 1366 CTAAGGATGGTTCTAAAGATCGATCCCGGGAATAGAATTGCTAGAAGCACCGTTCACCGC 1425
Query 1608 CTAACCAAAATGGCTGGTTGATCCTTCATATATACGGATACT 1649
||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1426 CTAACCAAAATGGCTGGTTGATCCTTCATATATACCGATACT 1467
Score = 1037 bits (561), Expect = 0.0
Identities = 737/815 (90%), Gaps = 40/815 (5%)
Strand=Plus/Plus
Query 188 TGAGGATAAAATCATGAATTCCAACTTCGGGAAGAGATCATCCGGATCGACCAATAGCTT 247
|||||| ||||||||||||| |||||||||||||||||||| ||| ||| |||||||||
Sbjct 10 TGAGGA-GAAATCATGAATTCGAACTTCGGGAAGAGATCATCGGGACCGATCAATAGCTT 68
Query 248 TGATTTCGATCTGGGGCTTGGATCGAGCCAAGGTAGACCTCTGAATGGTCAGAAGAGCCA 307
|||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||
Sbjct 69 CGATTTCGATCTGGGACTCGGATCGAGCCAAGGTAGACCTCTTAATGGTCAGAAGAGCCA 128
Query 308 AACATCTTCTTATTCGAGCTCGAATTCGCAGCCGAGACCTGCGTGGCAGCCTGGTAAGCC 367
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 129 AACATCTTCCTATTCAAGCTCGAATTCGCAGCCGAGACCTGCGTGGCAGCCTGGTAAGCC 188
Query 368 GTCGTGGACGCATCAACCTGCACCGAAGCAGAGTACGATCCGATCTGAGATCGGAAGTGG 427
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 189 GTCGTGGACGCATCAACCTGCACCGAAGCAGAGTACGATTCGATCTGAGATCGGAAGTGG 248
Query 428 ACCGACTTCAATGGTGGGTGATATTCATGGTAAGACGTGGGGGTCAGCTTCGGGATCGGG 487
|||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 249 ACCGACTTCAATGGTGGGTGATATTCATGGTAAGACTTGGGGTTCAGCTTCGGGATCGGA 308
Query 488 TTCGGGTATTGGGATTGTGAATAAGGATCCTAGTTTGTTTGGAGATTTGGTTGGTTCTGC 547
|||||| |||||||||||||||||||||||||| |||||||||||| |||| ||||||||
Sbjct 309 TTCGGGGATTGGGATTGTGAATAAGGATCCTAGCTTGTTTGGAGATCTGGTGGGTTCTGC 368
Query 548 GATAGGTCAAGGTAAATCTAGTAGAAACGTGCCGTTGAAGAATGCACCGCCTGTTTCGGC 607
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 369 GATAGGTCAAGGTAAATCTAGTAGAAACGTGCCGTTGAAGAATGCACCGCCTGTTTCGGC 428
Query 608 TTCAGGTTCGAGTAAGAGTCCTTATTCTATGGGGAATTTGGGTGATTCGTTGCCTAAATC 667
||||||||| ||||||||||||||||||||||||||||| | |||||||||||| |||||
Sbjct 429 TTCAGGTTCTAGTAAGAGTCCTTATTCTATGGGGAATTTTGCTGATTCGTTGCCCAAATC 488
Query 668 TGGTAATTCGATGAAAACTGGTGGTGGTATGGGTTATAGCAGTAATCCGAGTGGTTTTTC 727
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 489 TGGTAATTCTATGAAAACTGGTGGTGGTATGGGTTATAGCAGTAATCCGAGTGGTTTTTC 548
Query 728 TGGTGGTTACACGAGCTCCGGTGGT-T---TT--------AATGCTAAT------C---- 765
|||||||||||||| |||||||||| | || ||||||||| |
Sbjct 549 TGGTGGTTACACGATCTCCGGTGGTATGAATTCTGGTGTTAATGCTAATAGTAGTCCAAA 608
Query 766 T-T-GGAGGTCCTTCAATGAAAAATATGGCTGGGGGCAATCTAAATGGGTCTGGTCTTCC 823
| | |||||||||||||||||||||||| ||||||| ||||||| |||||||||||||||
Sbjct 609 TCTTGGAGGTCCTTCAATGAAAAATATGTCTGGGGGTAATCTAAGTGGGTCTGGTCTTCC 668
Query 824 TTCGAATAGTGATCCATTTGGTTCTTTGGTTGGTTTCGGATCAAAATCATCAGGAAGCA- 882
|||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 669 TTCGAACAGCGATCCTTTTGGTTCTTTGGTTGGTTTCGGATCAAAATCATCAGGAAGCAT 728
Query 883 -AA--C------CA-----GGAAAGGTTAACAACAATGCACAGAATGATACTTTTGGGAA 928
|| | || ||||||||||||||||||||||||| || | ||||||||||
Sbjct 729 CAATTCTGGAATCAAAACAGGAAAGGTTAACAACAATGCACAGAGTGCTGCTTTTGGGAA 788
Query 929 TTTTCAAGGAGTGTCGAACCTTAACAGTGGCGGTT 963
||||||||||| ||| ||||||||| || ||||||
Sbjct 789 TTTTCAAGGAGAGTCAAACCTTAACGGTAGCGGTT 823
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69895599575
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5