BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G16780.1 Length=1017 Score E Sequences producing significant alignments: (Bits) Value Ahg479143 jgi|Araly1|479143|fgenesh2_kg.3__1844__AT3G16780.1 1306 0.0 Ahg470235 jgi|Araly1|470235|fgenesh2_kg.1__189__AT1G02780.1 466 1e-130 Ahg490348 jgi|Araly1|490348|fgenesh2_kg.6__3482__AT4G02230.1 422 3e-117 > Ahg479143 jgi|Araly1|479143|fgenesh2_kg.3__1844__AT3G16780.1 Length=834 Score = 1306 bits (707), Expect = 0.0 Identities = 800/842 (95%), Gaps = 17/842 (2%) Strand=Plus/Plus Query 16 AACGGAGAGAGGCGGAGAGGAGAAGGAAGACGGCGTGAAGCAATGGTGTCGCTGAAGATC 75 |||| |||||||||||||||||||||||||||| | ||||||||||||||||||||| || Sbjct 1 AACGCAGAGAGGCGGAGAGGAGAAGGAAGACGGTGAGAAGCAATGGTGTCGCTGAAGCTC 60 Query 76 CAGAAGCGGCTCGCCGCATCCGTAATGAAATGCGGGAAAGGAAAAGTTTGGCTCGACCCC 135 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| Sbjct 61 CAGAAGCGGCTCGCCGCATCCGTAATGAAATGCGGGAAGGGAAAAGTTTGGCTCGATCCC 120 Query 136 AATGAATCGGGCGATATCTCTATGGCCAATTCCAGGCAGAACATTAGGAAGCTTGTGAAG 195 |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 121 AATGAATCTGGCGATATTTCTATGGCCAATTCCAGGCAGAACATTAGGAAGCTTGTGAAG 180 Query 196 GATGGTTTCATTATCAGGAAGCCTACTAAGATCCACTCACGTTCTCGGGCTAGGGCTTTG 255 |||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||| Sbjct 181 GATGGTTTCATTATCAGGAAGCCTACCAAGATCCACTCACGTTCTCGTGCCAGGGCTTTG 240 Query 256 AACGAGGCCAAGCGAAAGGGTCGTCACTCTGGATACGGTAAGAGAAAGGGTACAAGAGAG 315 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 AACGAGGCCAAGCGAAAGGGTCGTCACTCTGGATACGGTAAGAGAAAGGGTACAAGAGAG 300 Query 316 GCAAGGCTACCAACCAAGATTCTTTGGATGAGGAGAATGAGGGTGTTGAGGCGTTTCTTG 375 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 GCAAGGCTACCAACCAAGATTCTTTGGATGAGGAGAATGAGGGTGTTGAGGCGTTTCTTG 360 Query 376 AGCAAGTACCGTGAGTCAAAGAAGATTGATAGGCACATGTACCATGACATGTACATGAAA 435 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 AGCAAGTACCGTGAGTCAAAGAAGATTGATAGGCACATGTACCATGACATGTACATGAAA 420 Query 436 GTGAAGGGTAATGTTTTCAAGAACAAGCGTGTGCTTATGGAGAGCATCCACAAGATGAAG 495 |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 421 GTGAAGGGTAATGTGTTCAAGAACAAGCGTGTGCTTATGGAGAGTATCCACAAGATGAAG 480 Query 496 GCTGAGAAGGCTAGAGAGAAGACTCTCGCTGACCAGTTTGAGGCCAAGCGTATTAAGAAC 555 ||||||||||| ||||||||||| ||| ||||||| |||||||| ||||||||||||||| Sbjct 481 GCTGAGAAGGCCAGAGAGAAGACACTCTCTGACCAATTTGAGGCTAAGCGTATTAAGAAC 540 Query 556 AAGGCTAGCAGGGAGAGAAAGTTTGCCAGAAGAGAGGAGAGATTAGCTCAGGGACCTGGA 615 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 AAGGCTAGCAGGGAGAGAAAGTTTGCCAGAAGAGAGGAGAGATTAGCTCAGGGACCTGGA 600 Query 616 GGTGGAGAGACAACGACTCCTGCTG--GCGC-A-C-C-TCAACAACCAGAGGTAACCAAG 669 |||||||||||||| |||||||||| |||| | | | ||||||| |||||||||| ||| Sbjct 601 GGTGGAGAGACAACAACTCCTGCTGCTGCGCCAGCACCTCAACAAGCAGAGGTAACGAAG 660 Query 670 AAGAAGTCGAAGAAGTGATTTGGTGT-TGAACTTTTTTGCAATTGAATCTTTGAGTTTAC 728 |||||||||||||||||||||||| | ||||||||||||| |||||||||| |||||||| Sbjct 661 AAGAAGTCGAAGAAGTGATTTGGT-TCTGAACTTTTTTGCGATTGAATCTT-GAGTTTAC 718 Query 729 CTGTAGAAGAAGCGTCttttttttATCTTTTATATGATTTTGTCGGAGATTCTTTTCTTC 788 |||||||||||||||||||| ||| | | ||||||||||||||||||||||||||| Sbjct 719 CTGTAGAAGAAGCGTCTTTT----ATCCTA-A-ATGATTTTGTCGGAGATTCTTTTCTTC 772 Query 789 AAAAATATTTCTTATGTTATGGATCTCA--TTGCTTATTATGAATTTCTCAGTTTTGTTT 846 |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| Sbjct 773 AAAAATATTTCTTATGTTATGGATCTCACATTGCTTATTATGAATTTATCAGTTTTGTTT 832 Query 847 CT 848 || Sbjct 833 CT 834 > Ahg470235 jgi|Araly1|470235|fgenesh2_kg.1__189__AT1G02780.1 Length=966 Score = 466 bits (252), Expect = 1e-130 Identities = 461/561 (82%), Gaps = 18/561 (3%) Strand=Plus/Plus Query 57 AATGGTGTCGCTGAAGATCCAGAAGCGGCTCGCCGCATCCGTAATGAAATGCGGGAAAGG 116 |||||| || |||||| |||||||||||||||||||||| || ||||| |||||||| || Sbjct 74 AATGGTTTCTCTGAAGCTCCAGAAGCGGCTCGCCGCATCAGTCATGAAGTGCGGGAAGGG 133 Query 117 AAAAGTTTGGCTCGACCCCAATG-AATCGGGCGATATCTCTATGGCCAATTCCAGGCAGA 175 |||||||||||||| ||||||| || | ||| ||||| |||||||||||| | || | Sbjct 134 CAAAGTTTGGCTCGATCCCAATGAAAGC-TCCGACATCTCCATGGCCAATTCCCGCCAAA 192 Query 176 ACATTAGGAAGCTTGTGAAGGATGGTTTCATTATCAGGAAGCCTACTAAGATCCACTCAC 235 |||| |||||||||||||||||||||||||| ||||||||||| || ||||| ||||| | Sbjct 193 ACATCAGGAAGCTTGTGAAGGATGGTTTCATCATCAGGAAGCCAACCAAGATTCACTCTC 252 Query 236 GTTCTC-GGGCTAGGGCTTTGAACGA-GGCCAAG-CGAAAGGGTCGTCACTCTGGATACG 292 |||| | | ||| | |||| || |||||| | |||||||||||||||||||||| Sbjct 253 GTTC-CAGAGCTCGCAAAATGAA-GATTGCCAAGATG-AAGGGTCGTCACTCTGGATACG 309 Query 293 GTAAGAGAAAGGGTACAAGAGAGGCAAGGCTACCAACCAAGATTCTTTGGATGAGGAGAA 352 ||||||| |||||||| | || || ||| | ||||| ||| | || |||||| | || | Sbjct 310 GTAAGAGGAAGGGTACCCGTGAAGCTAGGTTGCCAACAAAGGTACTGTGGATGCGCAGGA 369 Query 353 TGAGGGTGT-TGAGGCGTTTCTTGA-GCAAGTACCGTGAGTCAAAGAAGATTGATAGGCA 410 || | || | |||||||| | |||| | || ||||| ||||| ||||||||||| | ||| Sbjct 370 TGCGTGT-TCTGAGGCGTCTGTTGAAGAAA-TACCGAGAGTCGAAGAAGATTGACAAGCA 427 Query 411 CATGTACCATGACATGTACATGAAAGTGAAGGGTAATGTTTTCAAGAACAAGCGTGTGCT 470 |||||||||||||||||||||| || ||||||||||| ||||||||||||||||| || Sbjct 428 CATGTACCATGACATGTACATGCGTGTTAAGGGTAATGTGTTCAAGAACAAGCGTGT-CT 486 Query 471 T-ATGGAGAGCATCCACAAGA-TGAAGGCTGAGAAGGCTAGAGAGAAGACTCTCG-CTGA 527 | |||||||| ||||||||| | ||||||||||||||||||||||||||| | | |||| Sbjct 487 TGATGGAGAGTATCCACAAGTCT-AAGGCTGAGAAGGCTAGAGAGAAGACTTT-GTCTGA 544 Query 528 CCAGTTTGAGGCCAAGCGTATTAAGAACAAGGCTAGCAGGGAGAGAAAGTTTGCCAGAAG 587 ||||||||||| ||| | ||||||||||||||| | || || ||| ||| || || Sbjct 545 TCAGTTTGAGGCTAAGAGGGCAAAGAACAAGGCTAGCCGAGAAAGGAAGCATGCTAGGAG 604 Query 588 AGAGGAGAGATTAGCTCAGGG 608 ||||||| | |||||| |||| Sbjct 605 AGAGGAGCGTTTAGCTAAGGG 625 > Ahg490348 jgi|Araly1|490348|fgenesh2_kg.6__3482__AT4G02230.1 Length=799 Score = 422 bits (228), Expect = 3e-117 Identities = 466/577 (81%), Gaps = 32/577 (6%) Strand=Plus/Plus Query 57 AATGGTGTCGCTGAAGATCCAGAAGCGGCTCGCCGCATCCGTAATGAAATGCGGGAAAG- 115 |||||| ||| ||||| |||||||||| ||||| | || ||| | || |||||| ||| Sbjct 30 AATGGTTTCGTTGAAGCTCCAGAAGCGTCTCGCATCCTCAGTACTCAAGTGCGGG-AAGA 88 Query 116 GAAAAGTTTGGCTCGACCCCAATGAATCGG--GCGATATCTCTATGGCCAATTC-CAGGC 172 ||||||| |||||||| || || ||| || | ||||| || ||||||||||| | | | Sbjct 89 GAAAAGTATGGCTCGATCCGAACGAA--GGAAGTGATATTTCCATGGCCAATTCGC-GCC 145 Query 173 AGAACATTAGGAAGCTTGTGAAGGATGGTTTCATTATCAGGAAGCCTACTAAGATCCACT 232 | ||||| ||||| |||||||||||||||||||| ||||||||||| || ||||| |||| Sbjct 146 AAAACATCAGGAAACTTGTGAAGGATGGTTTCATCATCAGGAAGCCAACAAAGATACACT 205 Query 233 CACGTTCTC-GGGCTAGGGC-TTTGAACGA-GGCCAAGCGAAAGGGTCGTCACTCTGGAT 289 |||| || | |||| | | | ||||| | |||||| ||||||| ||||||||||| | Sbjct 206 CACGATC-CAGGGC-ACGTCAATTGAA-TATAGCCAAGAGAAAGGGACGTCACTCTGGTT 262 Query 290 ACGGTAAGAGAAAGGGTACAAGAGAGGCAAGGCTACCAACCAAGATTCTT-TGGATGAGG 348 | |||||||| |||||||| ||||||||||||| || || ||| | || ||||||||| Sbjct 263 ATGGTAAGAGGAAGGGTACCCGAGAGGCAAGGCTGCCGACAAAG-GTATTGTGGATGAGG 321 Query 349 AGAATGAGGGTGTTGAGGCGT-TTCTTG-AGCAAGTACCGTGAGTCAAAGAAGATTGATA 406 || ||||| ||| |||||||| || ||| || ||||| | ||| | ||||||||||| | Sbjct 322 AGGATGAGAGTGCTGAGGCGTCTT-TTGAAG-AAGTATAGGGAGACGAAGAAGATTGACA 379 Query 407 GGCACATGTACCATGACATGTACATGAAAGTGAAGGGTAATGTTTTCAAGAACAAGCGTG 466 | ||||||||||||||||||||||||||||| ||||| || || |||||||||||||||| Sbjct 380 GACACATGTACCATGACATGTACATGAAAGTCAAGGGAAACGTCTTCAAGAACAAGCGTG 439 Query 467 TGCTT-ATGGAGAGCATCCACAAGATGAA-GGCTGAGAAGGCTAGAGAGAAGACTCTCG- 523 | ||| ||||| || || |||||| | || ||||||||||||||||||||||||| | | Sbjct 440 T-CTTGATGGAAAGTATTCACAAG-TCAAAGGCTGAGAAGGCTAGAGAGAAGACTTT-GT 496 Query 524 CTGACCAGTTTGAGGCCAAGCGTATTAAGAACAAGGCTAGCAGGGAGAG-AAAGTTTGC- 581 |||||||||||||||| ||| | |||||||||||||||| | || || ||| || Sbjct 497 CTGACCAGTTTGAGGCTAAGAGGGCTAAGAACAAGGCTAGCCGAGAAAGGAAACAC-GCT 555 Query 582 CAGAAGAGAGGAGAGA-TTAGCTCAGGGACCTGGAGG 617 | || |||||||| | || ||| |||| |||||||| Sbjct 556 C-GACGAGAGGAGCGTCTT-GCTAAGGGTCCTGGAGG 590 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 37817933664 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5