BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G16780.1
Length=1017
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479143 jgi|Araly1|479143|fgenesh2_kg.3__1844__AT3G16780.1 1306 0.0
Ahg470235 jgi|Araly1|470235|fgenesh2_kg.1__189__AT1G02780.1 466 1e-130
Ahg490348 jgi|Araly1|490348|fgenesh2_kg.6__3482__AT4G02230.1 422 3e-117
> Ahg479143 jgi|Araly1|479143|fgenesh2_kg.3__1844__AT3G16780.1
Length=834
Score = 1306 bits (707), Expect = 0.0
Identities = 800/842 (95%), Gaps = 17/842 (2%)
Strand=Plus/Plus
Query 16 AACGGAGAGAGGCGGAGAGGAGAAGGAAGACGGCGTGAAGCAATGGTGTCGCTGAAGATC 75
|||| |||||||||||||||||||||||||||| | ||||||||||||||||||||| ||
Sbjct 1 AACGCAGAGAGGCGGAGAGGAGAAGGAAGACGGTGAGAAGCAATGGTGTCGCTGAAGCTC 60
Query 76 CAGAAGCGGCTCGCCGCATCCGTAATGAAATGCGGGAAAGGAAAAGTTTGGCTCGACCCC 135
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 61 CAGAAGCGGCTCGCCGCATCCGTAATGAAATGCGGGAAGGGAAAAGTTTGGCTCGATCCC 120
Query 136 AATGAATCGGGCGATATCTCTATGGCCAATTCCAGGCAGAACATTAGGAAGCTTGTGAAG 195
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AATGAATCTGGCGATATTTCTATGGCCAATTCCAGGCAGAACATTAGGAAGCTTGTGAAG 180
Query 196 GATGGTTTCATTATCAGGAAGCCTACTAAGATCCACTCACGTTCTCGGGCTAGGGCTTTG 255
|||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||
Sbjct 181 GATGGTTTCATTATCAGGAAGCCTACCAAGATCCACTCACGTTCTCGTGCCAGGGCTTTG 240
Query 256 AACGAGGCCAAGCGAAAGGGTCGTCACTCTGGATACGGTAAGAGAAAGGGTACAAGAGAG 315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AACGAGGCCAAGCGAAAGGGTCGTCACTCTGGATACGGTAAGAGAAAGGGTACAAGAGAG 300
Query 316 GCAAGGCTACCAACCAAGATTCTTTGGATGAGGAGAATGAGGGTGTTGAGGCGTTTCTTG 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GCAAGGCTACCAACCAAGATTCTTTGGATGAGGAGAATGAGGGTGTTGAGGCGTTTCTTG 360
Query 376 AGCAAGTACCGTGAGTCAAAGAAGATTGATAGGCACATGTACCATGACATGTACATGAAA 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AGCAAGTACCGTGAGTCAAAGAAGATTGATAGGCACATGTACCATGACATGTACATGAAA 420
Query 436 GTGAAGGGTAATGTTTTCAAGAACAAGCGTGTGCTTATGGAGAGCATCCACAAGATGAAG 495
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 421 GTGAAGGGTAATGTGTTCAAGAACAAGCGTGTGCTTATGGAGAGTATCCACAAGATGAAG 480
Query 496 GCTGAGAAGGCTAGAGAGAAGACTCTCGCTGACCAGTTTGAGGCCAAGCGTATTAAGAAC 555
||||||||||| ||||||||||| ||| ||||||| |||||||| |||||||||||||||
Sbjct 481 GCTGAGAAGGCCAGAGAGAAGACACTCTCTGACCAATTTGAGGCTAAGCGTATTAAGAAC 540
Query 556 AAGGCTAGCAGGGAGAGAAAGTTTGCCAGAAGAGAGGAGAGATTAGCTCAGGGACCTGGA 615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 AAGGCTAGCAGGGAGAGAAAGTTTGCCAGAAGAGAGGAGAGATTAGCTCAGGGACCTGGA 600
Query 616 GGTGGAGAGACAACGACTCCTGCTG--GCGC-A-C-C-TCAACAACCAGAGGTAACCAAG 669
|||||||||||||| |||||||||| |||| | | | ||||||| |||||||||| |||
Sbjct 601 GGTGGAGAGACAACAACTCCTGCTGCTGCGCCAGCACCTCAACAAGCAGAGGTAACGAAG 660
Query 670 AAGAAGTCGAAGAAGTGATTTGGTGT-TGAACTTTTTTGCAATTGAATCTTTGAGTTTAC 728
|||||||||||||||||||||||| | ||||||||||||| |||||||||| ||||||||
Sbjct 661 AAGAAGTCGAAGAAGTGATTTGGT-TCTGAACTTTTTTGCGATTGAATCTT-GAGTTTAC 718
Query 729 CTGTAGAAGAAGCGTCttttttttATCTTTTATATGATTTTGTCGGAGATTCTTTTCTTC 788
|||||||||||||||||||| ||| | | |||||||||||||||||||||||||||
Sbjct 719 CTGTAGAAGAAGCGTCTTTT----ATCCTA-A-ATGATTTTGTCGGAGATTCTTTTCTTC 772
Query 789 AAAAATATTTCTTATGTTATGGATCTCA--TTGCTTATTATGAATTTCTCAGTTTTGTTT 846
|||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 773 AAAAATATTTCTTATGTTATGGATCTCACATTGCTTATTATGAATTTATCAGTTTTGTTT 832
Query 847 CT 848
||
Sbjct 833 CT 834
> Ahg470235 jgi|Araly1|470235|fgenesh2_kg.1__189__AT1G02780.1
Length=966
Score = 466 bits (252), Expect = 1e-130
Identities = 461/561 (82%), Gaps = 18/561 (3%)
Strand=Plus/Plus
Query 57 AATGGTGTCGCTGAAGATCCAGAAGCGGCTCGCCGCATCCGTAATGAAATGCGGGAAAGG 116
|||||| || |||||| |||||||||||||||||||||| || ||||| |||||||| ||
Sbjct 74 AATGGTTTCTCTGAAGCTCCAGAAGCGGCTCGCCGCATCAGTCATGAAGTGCGGGAAGGG 133
Query 117 AAAAGTTTGGCTCGACCCCAATG-AATCGGGCGATATCTCTATGGCCAATTCCAGGCAGA 175
|||||||||||||| ||||||| || | ||| ||||| |||||||||||| | || |
Sbjct 134 CAAAGTTTGGCTCGATCCCAATGAAAGC-TCCGACATCTCCATGGCCAATTCCCGCCAAA 192
Query 176 ACATTAGGAAGCTTGTGAAGGATGGTTTCATTATCAGGAAGCCTACTAAGATCCACTCAC 235
|||| |||||||||||||||||||||||||| ||||||||||| || ||||| ||||| |
Sbjct 193 ACATCAGGAAGCTTGTGAAGGATGGTTTCATCATCAGGAAGCCAACCAAGATTCACTCTC 252
Query 236 GTTCTC-GGGCTAGGGCTTTGAACGA-GGCCAAG-CGAAAGGGTCGTCACTCTGGATACG 292
|||| | | ||| | |||| || |||||| | ||||||||||||||||||||||
Sbjct 253 GTTC-CAGAGCTCGCAAAATGAA-GATTGCCAAGATG-AAGGGTCGTCACTCTGGATACG 309
Query 293 GTAAGAGAAAGGGTACAAGAGAGGCAAGGCTACCAACCAAGATTCTTTGGATGAGGAGAA 352
||||||| |||||||| | || || ||| | ||||| ||| | || |||||| | || |
Sbjct 310 GTAAGAGGAAGGGTACCCGTGAAGCTAGGTTGCCAACAAAGGTACTGTGGATGCGCAGGA 369
Query 353 TGAGGGTGT-TGAGGCGTTTCTTGA-GCAAGTACCGTGAGTCAAAGAAGATTGATAGGCA 410
|| | || | |||||||| | |||| | || ||||| ||||| ||||||||||| | |||
Sbjct 370 TGCGTGT-TCTGAGGCGTCTGTTGAAGAAA-TACCGAGAGTCGAAGAAGATTGACAAGCA 427
Query 411 CATGTACCATGACATGTACATGAAAGTGAAGGGTAATGTTTTCAAGAACAAGCGTGTGCT 470
|||||||||||||||||||||| || ||||||||||| ||||||||||||||||| ||
Sbjct 428 CATGTACCATGACATGTACATGCGTGTTAAGGGTAATGTGTTCAAGAACAAGCGTGT-CT 486
Query 471 T-ATGGAGAGCATCCACAAGA-TGAAGGCTGAGAAGGCTAGAGAGAAGACTCTCG-CTGA 527
| |||||||| ||||||||| | ||||||||||||||||||||||||||| | | ||||
Sbjct 487 TGATGGAGAGTATCCACAAGTCT-AAGGCTGAGAAGGCTAGAGAGAAGACTTT-GTCTGA 544
Query 528 CCAGTTTGAGGCCAAGCGTATTAAGAACAAGGCTAGCAGGGAGAGAAAGTTTGCCAGAAG 587
||||||||||| ||| | ||||||||||||||| | || || ||| ||| || ||
Sbjct 545 TCAGTTTGAGGCTAAGAGGGCAAAGAACAAGGCTAGCCGAGAAAGGAAGCATGCTAGGAG 604
Query 588 AGAGGAGAGATTAGCTCAGGG 608
||||||| | |||||| ||||
Sbjct 605 AGAGGAGCGTTTAGCTAAGGG 625
> Ahg490348 jgi|Araly1|490348|fgenesh2_kg.6__3482__AT4G02230.1
Length=799
Score = 422 bits (228), Expect = 3e-117
Identities = 466/577 (81%), Gaps = 32/577 (6%)
Strand=Plus/Plus
Query 57 AATGGTGTCGCTGAAGATCCAGAAGCGGCTCGCCGCATCCGTAATGAAATGCGGGAAAG- 115
|||||| ||| ||||| |||||||||| ||||| | || ||| | || |||||| |||
Sbjct 30 AATGGTTTCGTTGAAGCTCCAGAAGCGTCTCGCATCCTCAGTACTCAAGTGCGGG-AAGA 88
Query 116 GAAAAGTTTGGCTCGACCCCAATGAATCGG--GCGATATCTCTATGGCCAATTC-CAGGC 172
||||||| |||||||| || || ||| || | ||||| || ||||||||||| | | |
Sbjct 89 GAAAAGTATGGCTCGATCCGAACGAA--GGAAGTGATATTTCCATGGCCAATTCGC-GCC 145
Query 173 AGAACATTAGGAAGCTTGTGAAGGATGGTTTCATTATCAGGAAGCCTACTAAGATCCACT 232
| ||||| ||||| |||||||||||||||||||| ||||||||||| || ||||| ||||
Sbjct 146 AAAACATCAGGAAACTTGTGAAGGATGGTTTCATCATCAGGAAGCCAACAAAGATACACT 205
Query 233 CACGTTCTC-GGGCTAGGGC-TTTGAACGA-GGCCAAGCGAAAGGGTCGTCACTCTGGAT 289
|||| || | |||| | | | ||||| | |||||| ||||||| ||||||||||| |
Sbjct 206 CACGATC-CAGGGC-ACGTCAATTGAA-TATAGCCAAGAGAAAGGGACGTCACTCTGGTT 262
Query 290 ACGGTAAGAGAAAGGGTACAAGAGAGGCAAGGCTACCAACCAAGATTCTT-TGGATGAGG 348
| |||||||| |||||||| ||||||||||||| || || ||| | || |||||||||
Sbjct 263 ATGGTAAGAGGAAGGGTACCCGAGAGGCAAGGCTGCCGACAAAG-GTATTGTGGATGAGG 321
Query 349 AGAATGAGGGTGTTGAGGCGT-TTCTTG-AGCAAGTACCGTGAGTCAAAGAAGATTGATA 406
|| ||||| ||| |||||||| || ||| || ||||| | ||| | ||||||||||| |
Sbjct 322 AGGATGAGAGTGCTGAGGCGTCTT-TTGAAG-AAGTATAGGGAGACGAAGAAGATTGACA 379
Query 407 GGCACATGTACCATGACATGTACATGAAAGTGAAGGGTAATGTTTTCAAGAACAAGCGTG 466
| ||||||||||||||||||||||||||||| ||||| || || ||||||||||||||||
Sbjct 380 GACACATGTACCATGACATGTACATGAAAGTCAAGGGAAACGTCTTCAAGAACAAGCGTG 439
Query 467 TGCTT-ATGGAGAGCATCCACAAGATGAA-GGCTGAGAAGGCTAGAGAGAAGACTCTCG- 523
| ||| ||||| || || |||||| | || ||||||||||||||||||||||||| | |
Sbjct 440 T-CTTGATGGAAAGTATTCACAAG-TCAAAGGCTGAGAAGGCTAGAGAGAAGACTTT-GT 496
Query 524 CTGACCAGTTTGAGGCCAAGCGTATTAAGAACAAGGCTAGCAGGGAGAG-AAAGTTTGC- 581
|||||||||||||||| ||| | |||||||||||||||| | || || ||| ||
Sbjct 497 CTGACCAGTTTGAGGCTAAGAGGGCTAAGAACAAGGCTAGCCGAGAAAGGAAACAC-GCT 555
Query 582 CAGAAGAGAGGAGAGA-TTAGCTCAGGGACCTGGAGG 617
| || |||||||| | || ||| |||| ||||||||
Sbjct 556 C-GACGAGAGGAGCGTCTT-GCTAAGGGTCCTGGAGG 590
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37817933664
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5