BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G16800.2
Length=1473
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479146 jgi|Araly1|479146|fgenesh2_kg.3__1847__AT3G16800.2 1945 0.0
> Ahg479146 jgi|Araly1|479146|fgenesh2_kg.3__1847__AT3G16800.2
Length=1330
Score = 1945 bits (1053), Expect = 0.0
Identities = 1246/1332 (94%), Gaps = 41/1332 (3%)
Strand=Plus/Plus
Query 1 TCGAAGGAGAGAAAGCGAAAGATGATGATGAGTCATAGAGACAATTCACCAG-------C 53
|||||||||| ||||||||||||||||||||||||||||||| | ||||||| |
Sbjct 1 TCGAAGGAGAAAAAGCGAAAGATGATGATGAGTCATAGAGACGACTCACCAGCTTATAAC 60
Query 54 TTATAAGTAGTAAATCCACCAAAAGGAAAATATATTCAACAGAGAAACTCCGATCAAGAA 113
|||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 61 TTATAAGTAGTAAATCCACCAAAAGG-AAATATATTCAACAGAGAAACTCC-ATCAAGAA 118
Query 114 TATTCATATCAGA-GA-AGAAAAAGATCATAAGAG-AATCAAAG----AATGGTGCTTTT 166
||||| | |||| | |||| | ||||||||||| || ||||| ||||||||||||
Sbjct 119 TATTC--ACCAGATCATAGAAGAGGATCATAAGAGCAA-CAAAGAATTAATGGTGCTTTT 175
Query 167 ACCAGCGTTTTTGGACGGATTAGCGAGAACTGTATCGACGAAGAAAGGTAAAAAACTATC 226
||||||||||||||||||||| |||||||| || |||||||||||||||||||| |||||
Sbjct 176 ACCAGCGTTTTTGGACGGATTTGCGAGAACCGTGTCGACGAAGAAAGGTAAAAATCTATC 235
Query 227 GGAAGATGAAGATGGAGGGAGAGAGATCGCAAAATCGATGATTAAAGATTCGAAGAAGAA 286
|||| |||||||||||||||||||||||||| |||| ||||||| |||||| ||||||||
Sbjct 236 GGAAAATGAAGATGGAGGGAGAGAGATCGCAGAATCAATGATTAGAGATTCAAAGAAGAA 295
Query 287 CTCGACGTTGCTCGGTACTTCAGGCTTTGTTAGCTCCGAAAGTTCTAAGAGGTTTACCTC 346
|||||| ||| |||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 296 CTCGACTTTGATCGGTACTTCGGGCTTTGTTAGCTCCGAAAGTTCTAAGAGATTTACCTC 355
Query 347 TATTTGTTCTAATAGAGGTGAGAAAGGAATCAACCAAGATCGTGCAATTGTTTGGGAGGG 406
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 356 TATTTGTTCTAATAGAGGTGAGAAAGGAATCAACCAAGATCGTGCAACTGTTTGGGAGGG 415
Query 407 ATTTGGGTGCCAAGAAGACATAACATTTTGTGGGATGTTTGATGGACATGGACCATGGGG 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 ATTTGGGTGCCAAGAAGACATAACATTTTGTGGGATGTTTGATGGACATGGACCATGGGG 475
Query 467 ACATGTGATAGCCAAAAGAGTaaaaaaaTCATTTCCATCTTCTCTGCTTTGCCAATGGCA 526
|||||||||||||||||| |||||||| ||||| ||| |||||||||||||||| |||||
Sbjct 476 ACATGTGATAGCCAAAAGGGTAAAAAAGTCATTCCCAGCTTCTCTGCTTTGCCAGTGGCA 535
Query 527 ACAAACTCTTGCCTCCTTATCATCCTCGCCGGAATGTTCCTCTCCGTTTGATCTTTGGAA 586
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 536 ACAAACTCTTGCCTCCTTATCATCATCGCCGGAATGTTCCTCTCCGTTTGATCTTTGGAA 595
Query 587 GCAAGCTTGCCTGAAAACATTCTCCATCATCGATCTTGATCTCAAGATCAGTCCTTCCAT 646
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 596 GCAAGCTTGCCTGAAAACATTCTCCGTCATCGATCTTGATCTCAAGATCAGTCCTTCCAT 655
Query 647 TGATTCTTACTGTAGCGGCTGCACCGCTCTCACCGCTGTTTTGCAGGGTGATCATCTCGT 706
||||||||| || |||||||||||||||||||| |||||||||||||| |||||||| ||
Sbjct 656 TGATTCTTATTGCAGCGGCTGCACCGCTCTCACTGCTGTTTTGCAGGGCGATCATCTTGT 715
Query 707 TATAGCAAATGCGGGTGACTCACGAGCAGTAATAGCAACAACTTCTGATGATGGAAACGG 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 TATAGCAAATGCGGGTGACTCACGAGCAGTAATAGCAACAACTTCTGATGATGGAAACGG 775
Query 767 TTTAGTCCCGGTTCAGCTCTCGGTAGACTTTAAACCAAACATTCCCGAGGAAGCAGAACG 826
|||||| |||||||||||||| |||||||||||||| ||||| |||||||||||||||||
Sbjct 776 TTTAGTGCCGGTTCAGCTCTCAGTAGACTTTAAACCGAACATCCCCGAGGAAGCAGAACG 835
Query 827 GATAAAACAATCGGATGGACGATTGTTCTGCCTAGACGATGAACCGGGAGTGTACCGGGT 886
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 836 GATAAAACAATCGGATGGACGATTGTTCTGCCTAGACGATGAACCGGGAGTGTACCGGGT 895
Query 887 GGGTATGCCTAATGGAGGATCACTCGGTTTAGCTGTTTCAAGAGCGTTTGGAGATTACTG 946
|||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 896 AGGTATGCCTAATGGAGGATCACTCGGTTTAGCTGTTTCAAGAGCATTCGGAGATTACTG 955
Query 947 CCTTAAAGACTTCGGTTTAGTCTCTGAACCGGAAGTAACATACCGAAAGATAACCGACAA 1006
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 CCTTAAAGACTTCGGTTTAGTCTCTGAACCGGAAGTAACATACCGAAAGATAACCGACAA 1015
Query 1007 GGACCAGTTTCTAATCTTGGCCACCGATGGGATGTGGGATGTGATGACGAATAATGAGGC 1066
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1016 GGACCAGTTTCTAATCTTGGCCACCGATGGGATGTGGGATGTGATGACGAACAATGAGGC 1075
Query 1067 AGTGgagatagtaagaggagttaaagagagaagaaagagcgcaaagagattggtagagag 1126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1076 AGTGGAGATAGTAAGAGGAGTTAAAGAGAGAAGAAAGAGCGCAAAGAGATTGGTAGAGAG 1135
Query 1127 agCTGTGACGCTTTGGCGTAGGAAGAGAAGAAGCATCGCCATGGATGATAtttctgttct 1186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1136 AGCTGTGACGCTTTGGCGTAGGAAGAGAAGAAGCATCGCCATGGATGATATTTCTGTTCT 1195
Query 1187 ctgtctcttctttcgtccttcttagtttaactcttctttaacctctctATTACTTATATA 1246
|||||||||||||||||||||||||| |||| | | || | | |
Sbjct 1196 CTGTCTCTTCTTTCGTCCTTCTTAGT----CTCTG----A-C------AT-A-T-A---- 1233
Query 1247 CATTTATCAATGTATTTTGGGCGTCATTGAACAACAAAAATGTGATACATATACATTTTT 1306
||||||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||
Sbjct 1234 CATTTATCAATGTATTTTGAGCGTCAATGAACAACAAAAATGTGATATATATACATTTTT 1293
Query 1307 ACATAGAATAAT 1318
||||||||||||
Sbjct 1294 ACATAGAATAAT 1305
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55116584515
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5