BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G16810.1 Length=2194 Score E Sequences producing significant alignments: (Bits) Value Ahg904629 jgi|Araly1|904629|Al_scaffold_0003_1757 2913 0.0 Ahg887896 jgi|Araly1|887896|Al_scaffold_0769_1 769 0.0 > Ahg904629 jgi|Araly1|904629|Al_scaffold_0003_1757 Length=1890 Score = 2913 bits (1577), Expect = 0.0 Identities = 1775/1868 (95%), Gaps = 23/1868 (1%) Strand=Plus/Plus Query 147 ATTCGATTCTCTAAAATCAAAGAAGCCAAAGCTAGTGTCTGGAG------AACAACAACA 200 |||||||||||||||||| |||||||||||||| |||||||||| |||||||||| Sbjct 39 ATTCGATTCTCTAAAATCGAAGAAGCCAAAGCTGGTGTCTGGAGAACAACAACAACAACA 98 Query 201 ACATGTGAAACCTAAATTTGGTAAACCCAAATCTGCAGGTGATAAGGAGCAGAGTACTAA 260 ||||| |||||||||||||| ||||||||||||| | | | ||| || | Sbjct 99 ACATGGGAAACCTAAATTTGTTAAACCCAAATCT-----T--T----TG--GAG-AC-AG 143 Query 261 TCTATCGAAGAAGGAGCGTCGTGTACAGGCTAAGGAGCTAACAGAAGCTAGGAAGAAGAA 320 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 144 TCTATCGAAGAAGGAGCGTCGTGTACAGGCTAAGGAGCTAACAGAAGCTAGGAAGAAGAA 203 Query 321 GAGAAAGCCTCATTACAATCTTGAGCAAGAGCTTGTATCTCTATGGGAGAAGATGAGACG 380 ||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||| || Sbjct 204 GAGGAAGCCACATTACAATCTTGAGCAAGAGCTTGCATCTCTATGGGAGAAGATGAGGCG 263 Query 381 CCGTAATATCGGCAAGGAGGATCGATCAAAGCTGATTTCTGAAGCTATAAGGAAGATGAA 440 ||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 264 TCGTGATATTGGCAAGGAGGACCGATCAAAGCTGATTTCTGAAGCTATAAGGAAGATGAA 323 Query 441 GGGGAAGGTTCCAGAGATTGCAGTCTCACATGTTTCATCTCGTGTACTTCAGACTTGTGT 500 ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| Sbjct 324 GGGGAAGGTTCCAGAGATTGCAGTCTCACATGTTTCATCCCGTGTACTCCAGACTTGTGT 383 Query 501 GAAGTTTTGCTCACAAGCTGAGAAAGATGTTCTCTTCACGGAACTCCAGCCACAGTTTCT 560 ||||||||||||||||||||| ||||||| ||||||| | |||||||||||||||||||| Sbjct 384 GAAGTTTTGCTCACAAGCTGAAAAAGATGCTCTCTTCGCCGAACTCCAGCCACAGTTTCT 443 Query 561 TAACCTTGCTTCTAACAAATATGCTGTTCACTTTATACAGAAGATGTTGGATGGAGCATC 620 ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| Sbjct 444 TAACCTTGCTTCTAATAAATATGCTGTTCATTTTATACAGAAGATGTTGGATGGAGCATC 503 Query 621 TAAGCAGCAGCTGGCAGCTTGTATATCCAGCCTCAGGGGACATGTTGCTCCTCTTCTCCG 680 |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| Sbjct 504 TAAGCAGCAGCTGGCAGCTTGTATATTCAGCCTCCGGGGACATGTTGCTCCTCTTCTCCG 563 Query 681 TCATGTGTTCGGATCTCTTGTTGTGGAGCATGCATACCATCTGGGAAGTGCAGCACAAAA 740 ||| | ||||||||| ||||||||||||||||||||| |||||||| |||||||||||| Sbjct 564 TCACCTCTTCGGATCTGTTGTTGTGGAGCATGCATACCGTCTGGGAACTGCAGCACAAAA 623 Query 741 ACAAGAACTCCTTGCAGAATTGTATTCTACTGAGCTTCAGTTATTCAAGGGCTTGACCAC 800 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | Sbjct 624 ACAAGAACTCCTTGCAGAATTGTATTCTACAGAGCTTCAGTTATTCAAGGGCTTGACCTC 683 Query 801 ATCTAACGAAAAAACGGTGGTGGACATCATTGCTAAGCTGGGACTGCAAAAAGGCGCTGT 860 ||||| ||| ||||||||||| |||||||| |||||||| |||||||||||||||||||| Sbjct 684 ATCTACCGATAAAACGGTGGTAGACATCATCGCTAAGCTAGGACTGCAAAAAGGCGCTGT 743 Query 861 TAACCGACACATGACTGCCATTATCCAACCGATACTTGAGAAGGGAATTGTCGACCACAC 920 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 744 TAACCGACACATGACTGCCATTATCCAACCGATACTTGAGAAGGGAATTGTCGACCACAC 803 Query 921 TATCACACACAAATTGCTGATTGAATACCTGACAATAGCTGATAAGACTTCTGCTGCAGA 980 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 804 TATCACACACAAATTGCTGATTGAATACCTGACAATAGCTGATAAGACTTCTGCTGCAGA 863 Query 981 TGTGCTTCAGCTACTGACAGGCTCCCTTCTTTTGCGTATGGTTCATACCCGTGATGGTTC 1040 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 864 TGTGCTTCAGCTACTGACAGGCTCCCTTCTTTTGCGTATGGTTCATACCCGTGATGGTTC 923 Query 1041 TAGGCTTGCCATGCTTTCTATCAAACATGGAAGCGCTAAGGAGAGAAAGAAGATTATCAA 1100 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 924 TAGGCTTGCCATGCTTTCTATCAAACATGGAAGCGCCAAGGAGAGAAAGAAGATTATCAA 983 Query 1101 AGCAATGAAAGAGCATGTTAAAAAGATGGCTTTTGATCAGTTTGGAAGTATGGTGCTTGC 1160 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 984 AGCAATGAAAGAGCATGTTAAAAAGATGGCTTTTTATCAGTTTGGAAGTATGGTGCTTGC 1043 Query 1161 ATGTATTTTTTCAATAGTTGATGACACAAAGCTCGTGACCAAGATAATTGTTCGTGAGCT 1220 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1044 ATGTATTTTTTCAATAGTTGATGACACAAAGCTCGTGACCAAGATAATTGTTCGTGAGCT 1103 Query 1221 TGAGGCCACCCTAAAGGATCTTGTTATGGACAAGAATGGTAGGAGACCGCTATTGCAGCT 1280 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1104 TGAGGCCAGCCTAAAGGATCTTGTTATGGACAAGAATGGTAGGAGACCGCTATTGCAGCT 1163 Query 1281 ACTGCATCCAAATTCCTCACGTTATTTAAGCCATGATGATTTGGCCGCTCTTGATCTTTC 1340 ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1164 ACTGCATCCAAATTCTTCACGTTATTTGAGCCATGATGATTTGGCCGCTCTTGATCTTTC 1223 Query 1341 TGTTCCATCACTCTGCTCAATGGATAAGTCAGAGACATCCTCTAAAACAAAGGACACAGA 1400 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1224 TGTTCCATCACTCTGCTCAATGGATAAGTCAGAGACATCCTCTAAAACAAAGGACACAGA 1283 Query 1401 TGGTAACGAAAT-TGGTGAGGAGACGAAGGATGAACAAGAAGATACAGTAGCTGAACATT 1459 |||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1284 TGGTAACGAA-TCTGGTGAGGAGACGAAGGATGAACAAGAAGATACAGTAGTTGAACATA 1342 Query 1460 CTGATCATGAAGAAAACGTCACAGCTATGGGTGGTAAAAAAGACCCCCTTGTGAGAAGAC 1519 | ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| Sbjct 1343 CAGATCATGAAGAAAACGTCACAGCTATGGGAGGTAAAAAAGATCCCCTTGTGAGAAGAC 1402 Query 1520 AGGAGTTGCTTGTCAACAGTGGCCTTGCTGAGAGGCTTATTGATGTGTGTGTGGAGAACG 1579 |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| | Sbjct 1403 AGGAGTTGCTCGTCAACAGTGGCCTTGCTGAGAGGCTTATTGATGTGTGCGTGGAGAATG 1462 Query 1580 CCGAGGAATTCCTCCAGTCAAAATTTGGCAATGAGGTCATGTATGAGGTTGCAATCGGAG 1639 |||||||||||||| ||||||| |||||||| ||||||||||||||||||||||| |||| Sbjct 1463 CCGAGGAATTCCTCAAGTCAAACTTTGGCAAAGAGGTCATGTATGAGGTTGCAATTGGAG 1522 Query 1640 GCTCTGATGGTATTCTCTGCCCATCTCTGAGCGAGAAGCTGTGTGAGCTGTACGAAGCTA 1699 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1523 GCTCTGATGGTATTCTTTGCCCATCTCTGAGCGAGAAGCTGTGTGAGCTGTACGAAGCTA 1582 Query 1700 TTAGCTCTGTAGCAGCAGAACCGAAACCCCAAGAATCTGAGAAGGATTCAGAACACATCC 1759 ||||||||||||||||| ||||||||||||||||||||| |||||||||||| ||||||| Sbjct 1583 TTAGCTCTGTAGCAGCAAAACCGAAACCCCAAGAATCTGGGAAGGATTCAGAGCACATCC 1642 Query 1760 TGGAAAACTTTCACTCAAGTCGGACCATAAGAAGGCTTGTCTTGAATCGCCCTGGTTTCG 1819 |||||||||||||||||||||||||||||||||||||||||||| || |||||||||| | Sbjct 1643 TGGAAAACTTTCACTCAAGTCGGACCATAAGAAGGCTTGTCTTGGATTGCCCTGGTTTTG 1702 Query 1820 CGTCCATTCTCTTTAAGAAGGCCTTGTCTGGAAAATGTCGGTCGTGGGCACAAGGACACT 1879 | |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1703 CCTCCACTCTCTTTAAGAAGGCCTTGTCTGGAAAATGTCGGTCGTGGGCTCAAGGACACT 1762 Query 1880 GTTCAAAGATACTATCTGCTTTCGTAGAGACTGAAGATGTTCAAGTTCGTGAGATGGCTA 1939 ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| Sbjct 1763 GTTCAAAGATACTATCTGCTTTCCTAGAGACTGAAGATTTTCAAGTTCGTGAGATGGCTA 1822 Query 1940 AAACAGAGCTTCAGGTGTTGGTGAATGAAGGTACTCTGAAGATCTCAGCAACCAAGAAAC 1999 |||||||||||||||| ||||| ||||||||||||||||| ||||||||| ||||||||| Sbjct 1823 AAACAGAGCTTCAGGTCTTGGTTAATGAAGGTACTCTGAAAATCTCAGCAGCCAAGAAAC 1882 Query 2000 CTGAATGA 2007 |||||||| Sbjct 1883 CTGAATGA 1890 > Ahg887896 jgi|Araly1|887896|Al_scaffold_0769_1 Length=597 Score = 769 bits (416), Expect = 0.0 Identities = 510/554 (92%), Gaps = 12/554 (2%) Strand=Plus/Plus Query 147 ATTCGATTCTCTAAAATCAAAGAAGCCAAAGCTAGTGTCTGGAGAACAACAACAACATGT 206 |||||||||||||||||| |||||||||||||| |||||||||||||||||||||| Sbjct 48 ATTCGATTCTCTAAAATCGAAGAAGCCAAAGCTGGTGTCTGGAGAACAACAACAAC---- 103 Query 207 GAAACCTAAATTTGGTAAACCCAAATCTGCAGGTGATAAGGAGCAGAGTACTAATCTATC 266 || | | ||| |||||||||| | || || | ||||||||||||||||||||| Sbjct 104 --AA-C---A--TGGGAAACCCAAATATTTTGGAGACAGGGAGCAGAGTACTAATCTATC 155 Query 267 GAAGAAGGAGCGTCGTGTACAGGCTAAGGAGCTAACAGAAGCTAGGAAGAAGAAGAGAAA 326 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 156 GAAGAAGGAGCGTCGTGTACAGGCTAAGGAGCTAACAGAAGCTAGGAAGAAGAAGAGGAA 215 Query 327 GCCTCATTACAATCTTGAGCAAGAGCTTGTATCTCTATGGGAGAAGATGAGACGCCGTAA 386 ||| ||||||||||||||||||||||||| ||||||||||||||||||||| || ||| | Sbjct 216 GCCACATTACAATCTTGAGCAAGAGCTTGCATCTCTATGGGAGAAGATGAGGCGTCGTGA 275 Query 387 TATCGGCAAGGAGGATCGATCAAAGCTGATTTCTGAAGCTATAAGGAAGATGAAGGGGAA 446 ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 276 TATTGGCAAGGAGGACCGATCAAAGCTGATTTCTGAAGCTATAAGGAAGATGAAGGGGAA 335 Query 447 GGTTCCAGAGATTGCAGTCTCACATGTTTCATCTCGTGTACTTCAGACTTGTGTGAAGTT 506 ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| Sbjct 336 GGTTCCAGAGATTGCAGTCTCACATGTTTCATCCCGTGTACTCCAGACTTGTGTGAAGTT 395 Query 507 TTGCTCACAAGCTGAGAAAGATGTTCTCTTCACGGAACTCCAGCCACAGTTTCTTAACCT 566 ||||||||||||||| ||||||| ||||||| | |||||||||||||||||||||||||| Sbjct 396 TTGCTCACAAGCTGAAAAAGATGCTCTCTTCGCCGAACTCCAGCCACAGTTTCTTAACCT 455 Query 567 TGCTTCTAACAAATATGCTGTTCACTTTATACAGAAGATGTTGGATGGAGCATCTAAGCA 626 ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 456 TGCTTCTAATAAATATGCTGTTCATTTTATACAGAAGATGTTGGATGGAGCATCTAAGCA 515 Query 627 GCAGCTGGCAGCTTGTATATCCAGCCTCAGGGGACATGTTGCTCCTCTTCTCCGTCATGT 686 |||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| | Sbjct 516 GCAGCTGGCAGCTTGTATATTCAGCCTCCGGGGACATGTTGCTCCTCTTCTCCGTCACCT 575 Query 687 GTTCGGATCTCTTG 700 ||| |||||| ||| Sbjct 576 GTTTGGATCTGTTG 589 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 82579651160 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5