BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G16810.1
Length=2194
Score E
Sequences producing significant alignments: (Bits) Value
Ahg904629 jgi|Araly1|904629|Al_scaffold_0003_1757 2913 0.0
Ahg887896 jgi|Araly1|887896|Al_scaffold_0769_1 769 0.0
> Ahg904629 jgi|Araly1|904629|Al_scaffold_0003_1757
Length=1890
Score = 2913 bits (1577), Expect = 0.0
Identities = 1775/1868 (95%), Gaps = 23/1868 (1%)
Strand=Plus/Plus
Query 147 ATTCGATTCTCTAAAATCAAAGAAGCCAAAGCTAGTGTCTGGAG------AACAACAACA 200
|||||||||||||||||| |||||||||||||| |||||||||| ||||||||||
Sbjct 39 ATTCGATTCTCTAAAATCGAAGAAGCCAAAGCTGGTGTCTGGAGAACAACAACAACAACA 98
Query 201 ACATGTGAAACCTAAATTTGGTAAACCCAAATCTGCAGGTGATAAGGAGCAGAGTACTAA 260
||||| |||||||||||||| ||||||||||||| | | | ||| || |
Sbjct 99 ACATGGGAAACCTAAATTTGTTAAACCCAAATCT-----T--T----TG--GAG-AC-AG 143
Query 261 TCTATCGAAGAAGGAGCGTCGTGTACAGGCTAAGGAGCTAACAGAAGCTAGGAAGAAGAA 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 144 TCTATCGAAGAAGGAGCGTCGTGTACAGGCTAAGGAGCTAACAGAAGCTAGGAAGAAGAA 203
Query 321 GAGAAAGCCTCATTACAATCTTGAGCAAGAGCTTGTATCTCTATGGGAGAAGATGAGACG 380
||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 204 GAGGAAGCCACATTACAATCTTGAGCAAGAGCTTGCATCTCTATGGGAGAAGATGAGGCG 263
Query 381 CCGTAATATCGGCAAGGAGGATCGATCAAAGCTGATTTCTGAAGCTATAAGGAAGATGAA 440
||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 264 TCGTGATATTGGCAAGGAGGACCGATCAAAGCTGATTTCTGAAGCTATAAGGAAGATGAA 323
Query 441 GGGGAAGGTTCCAGAGATTGCAGTCTCACATGTTTCATCTCGTGTACTTCAGACTTGTGT 500
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 324 GGGGAAGGTTCCAGAGATTGCAGTCTCACATGTTTCATCCCGTGTACTCCAGACTTGTGT 383
Query 501 GAAGTTTTGCTCACAAGCTGAGAAAGATGTTCTCTTCACGGAACTCCAGCCACAGTTTCT 560
||||||||||||||||||||| ||||||| ||||||| | ||||||||||||||||||||
Sbjct 384 GAAGTTTTGCTCACAAGCTGAAAAAGATGCTCTCTTCGCCGAACTCCAGCCACAGTTTCT 443
Query 561 TAACCTTGCTTCTAACAAATATGCTGTTCACTTTATACAGAAGATGTTGGATGGAGCATC 620
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 444 TAACCTTGCTTCTAATAAATATGCTGTTCATTTTATACAGAAGATGTTGGATGGAGCATC 503
Query 621 TAAGCAGCAGCTGGCAGCTTGTATATCCAGCCTCAGGGGACATGTTGCTCCTCTTCTCCG 680
|||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 504 TAAGCAGCAGCTGGCAGCTTGTATATTCAGCCTCCGGGGACATGTTGCTCCTCTTCTCCG 563
Query 681 TCATGTGTTCGGATCTCTTGTTGTGGAGCATGCATACCATCTGGGAAGTGCAGCACAAAA 740
||| | ||||||||| ||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 564 TCACCTCTTCGGATCTGTTGTTGTGGAGCATGCATACCGTCTGGGAACTGCAGCACAAAA 623
Query 741 ACAAGAACTCCTTGCAGAATTGTATTCTACTGAGCTTCAGTTATTCAAGGGCTTGACCAC 800
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 624 ACAAGAACTCCTTGCAGAATTGTATTCTACAGAGCTTCAGTTATTCAAGGGCTTGACCTC 683
Query 801 ATCTAACGAAAAAACGGTGGTGGACATCATTGCTAAGCTGGGACTGCAAAAAGGCGCTGT 860
||||| ||| ||||||||||| |||||||| |||||||| ||||||||||||||||||||
Sbjct 684 ATCTACCGATAAAACGGTGGTAGACATCATCGCTAAGCTAGGACTGCAAAAAGGCGCTGT 743
Query 861 TAACCGACACATGACTGCCATTATCCAACCGATACTTGAGAAGGGAATTGTCGACCACAC 920
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 744 TAACCGACACATGACTGCCATTATCCAACCGATACTTGAGAAGGGAATTGTCGACCACAC 803
Query 921 TATCACACACAAATTGCTGATTGAATACCTGACAATAGCTGATAAGACTTCTGCTGCAGA 980
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 804 TATCACACACAAATTGCTGATTGAATACCTGACAATAGCTGATAAGACTTCTGCTGCAGA 863
Query 981 TGTGCTTCAGCTACTGACAGGCTCCCTTCTTTTGCGTATGGTTCATACCCGTGATGGTTC 1040
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 864 TGTGCTTCAGCTACTGACAGGCTCCCTTCTTTTGCGTATGGTTCATACCCGTGATGGTTC 923
Query 1041 TAGGCTTGCCATGCTTTCTATCAAACATGGAAGCGCTAAGGAGAGAAAGAAGATTATCAA 1100
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 924 TAGGCTTGCCATGCTTTCTATCAAACATGGAAGCGCCAAGGAGAGAAAGAAGATTATCAA 983
Query 1101 AGCAATGAAAGAGCATGTTAAAAAGATGGCTTTTGATCAGTTTGGAAGTATGGTGCTTGC 1160
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 984 AGCAATGAAAGAGCATGTTAAAAAGATGGCTTTTTATCAGTTTGGAAGTATGGTGCTTGC 1043
Query 1161 ATGTATTTTTTCAATAGTTGATGACACAAAGCTCGTGACCAAGATAATTGTTCGTGAGCT 1220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1044 ATGTATTTTTTCAATAGTTGATGACACAAAGCTCGTGACCAAGATAATTGTTCGTGAGCT 1103
Query 1221 TGAGGCCACCCTAAAGGATCTTGTTATGGACAAGAATGGTAGGAGACCGCTATTGCAGCT 1280
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1104 TGAGGCCAGCCTAAAGGATCTTGTTATGGACAAGAATGGTAGGAGACCGCTATTGCAGCT 1163
Query 1281 ACTGCATCCAAATTCCTCACGTTATTTAAGCCATGATGATTTGGCCGCTCTTGATCTTTC 1340
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1164 ACTGCATCCAAATTCTTCACGTTATTTGAGCCATGATGATTTGGCCGCTCTTGATCTTTC 1223
Query 1341 TGTTCCATCACTCTGCTCAATGGATAAGTCAGAGACATCCTCTAAAACAAAGGACACAGA 1400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1224 TGTTCCATCACTCTGCTCAATGGATAAGTCAGAGACATCCTCTAAAACAAAGGACACAGA 1283
Query 1401 TGGTAACGAAAT-TGGTGAGGAGACGAAGGATGAACAAGAAGATACAGTAGCTGAACATT 1459
|||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1284 TGGTAACGAA-TCTGGTGAGGAGACGAAGGATGAACAAGAAGATACAGTAGTTGAACATA 1342
Query 1460 CTGATCATGAAGAAAACGTCACAGCTATGGGTGGTAAAAAAGACCCCCTTGTGAGAAGAC 1519
| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1343 CAGATCATGAAGAAAACGTCACAGCTATGGGAGGTAAAAAAGATCCCCTTGTGAGAAGAC 1402
Query 1520 AGGAGTTGCTTGTCAACAGTGGCCTTGCTGAGAGGCTTATTGATGTGTGTGTGGAGAACG 1579
|||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 1403 AGGAGTTGCTCGTCAACAGTGGCCTTGCTGAGAGGCTTATTGATGTGTGCGTGGAGAATG 1462
Query 1580 CCGAGGAATTCCTCCAGTCAAAATTTGGCAATGAGGTCATGTATGAGGTTGCAATCGGAG 1639
|||||||||||||| ||||||| |||||||| ||||||||||||||||||||||| ||||
Sbjct 1463 CCGAGGAATTCCTCAAGTCAAACTTTGGCAAAGAGGTCATGTATGAGGTTGCAATTGGAG 1522
Query 1640 GCTCTGATGGTATTCTCTGCCCATCTCTGAGCGAGAAGCTGTGTGAGCTGTACGAAGCTA 1699
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1523 GCTCTGATGGTATTCTTTGCCCATCTCTGAGCGAGAAGCTGTGTGAGCTGTACGAAGCTA 1582
Query 1700 TTAGCTCTGTAGCAGCAGAACCGAAACCCCAAGAATCTGAGAAGGATTCAGAACACATCC 1759
||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||||||
Sbjct 1583 TTAGCTCTGTAGCAGCAAAACCGAAACCCCAAGAATCTGGGAAGGATTCAGAGCACATCC 1642
Query 1760 TGGAAAACTTTCACTCAAGTCGGACCATAAGAAGGCTTGTCTTGAATCGCCCTGGTTTCG 1819
|||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |
Sbjct 1643 TGGAAAACTTTCACTCAAGTCGGACCATAAGAAGGCTTGTCTTGGATTGCCCTGGTTTTG 1702
Query 1820 CGTCCATTCTCTTTAAGAAGGCCTTGTCTGGAAAATGTCGGTCGTGGGCACAAGGACACT 1879
| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1703 CCTCCACTCTCTTTAAGAAGGCCTTGTCTGGAAAATGTCGGTCGTGGGCTCAAGGACACT 1762
Query 1880 GTTCAAAGATACTATCTGCTTTCGTAGAGACTGAAGATGTTCAAGTTCGTGAGATGGCTA 1939
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 1763 GTTCAAAGATACTATCTGCTTTCCTAGAGACTGAAGATTTTCAAGTTCGTGAGATGGCTA 1822
Query 1940 AAACAGAGCTTCAGGTGTTGGTGAATGAAGGTACTCTGAAGATCTCAGCAACCAAGAAAC 1999
|||||||||||||||| ||||| ||||||||||||||||| ||||||||| |||||||||
Sbjct 1823 AAACAGAGCTTCAGGTCTTGGTTAATGAAGGTACTCTGAAAATCTCAGCAGCCAAGAAAC 1882
Query 2000 CTGAATGA 2007
||||||||
Sbjct 1883 CTGAATGA 1890
> Ahg887896 jgi|Araly1|887896|Al_scaffold_0769_1
Length=597
Score = 769 bits (416), Expect = 0.0
Identities = 510/554 (92%), Gaps = 12/554 (2%)
Strand=Plus/Plus
Query 147 ATTCGATTCTCTAAAATCAAAGAAGCCAAAGCTAGTGTCTGGAGAACAACAACAACATGT 206
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 48 ATTCGATTCTCTAAAATCGAAGAAGCCAAAGCTGGTGTCTGGAGAACAACAACAAC---- 103
Query 207 GAAACCTAAATTTGGTAAACCCAAATCTGCAGGTGATAAGGAGCAGAGTACTAATCTATC 266
|| | | ||| |||||||||| | || || | |||||||||||||||||||||
Sbjct 104 --AA-C---A--TGGGAAACCCAAATATTTTGGAGACAGGGAGCAGAGTACTAATCTATC 155
Query 267 GAAGAAGGAGCGTCGTGTACAGGCTAAGGAGCTAACAGAAGCTAGGAAGAAGAAGAGAAA 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 156 GAAGAAGGAGCGTCGTGTACAGGCTAAGGAGCTAACAGAAGCTAGGAAGAAGAAGAGGAA 215
Query 327 GCCTCATTACAATCTTGAGCAAGAGCTTGTATCTCTATGGGAGAAGATGAGACGCCGTAA 386
||| ||||||||||||||||||||||||| ||||||||||||||||||||| || ||| |
Sbjct 216 GCCACATTACAATCTTGAGCAAGAGCTTGCATCTCTATGGGAGAAGATGAGGCGTCGTGA 275
Query 387 TATCGGCAAGGAGGATCGATCAAAGCTGATTTCTGAAGCTATAAGGAAGATGAAGGGGAA 446
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 276 TATTGGCAAGGAGGACCGATCAAAGCTGATTTCTGAAGCTATAAGGAAGATGAAGGGGAA 335
Query 447 GGTTCCAGAGATTGCAGTCTCACATGTTTCATCTCGTGTACTTCAGACTTGTGTGAAGTT 506
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 336 GGTTCCAGAGATTGCAGTCTCACATGTTTCATCCCGTGTACTCCAGACTTGTGTGAAGTT 395
Query 507 TTGCTCACAAGCTGAGAAAGATGTTCTCTTCACGGAACTCCAGCCACAGTTTCTTAACCT 566
||||||||||||||| ||||||| ||||||| | ||||||||||||||||||||||||||
Sbjct 396 TTGCTCACAAGCTGAAAAAGATGCTCTCTTCGCCGAACTCCAGCCACAGTTTCTTAACCT 455
Query 567 TGCTTCTAACAAATATGCTGTTCACTTTATACAGAAGATGTTGGATGGAGCATCTAAGCA 626
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 456 TGCTTCTAATAAATATGCTGTTCATTTTATACAGAAGATGTTGGATGGAGCATCTAAGCA 515
Query 627 GCAGCTGGCAGCTTGTATATCCAGCCTCAGGGGACATGTTGCTCCTCTTCTCCGTCATGT 686
|||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |
Sbjct 516 GCAGCTGGCAGCTTGTATATTCAGCCTCCGGGGACATGTTGCTCCTCTTCTCCGTCACCT 575
Query 687 GTTCGGATCTCTTG 700
||| |||||| |||
Sbjct 576 GTTTGGATCTGTTG 589
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82579651160
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5