BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G16820.1
Length=942
Score E
Sequences producing significant alignments: (Bits) Value
Ahg333398 jgi|Araly1|333398|fgenesh1_pm.C_scaffold_769000001 693 0.0
Ahg318446 jgi|Araly1|318446|fgenesh1_pm.C_scaffold_3001462 449 1e-125
Ahg913019 jgi|Araly1|913019|Al_scaffold_0001_3273 62.1 7e-09
Ahg485308 jgi|Araly1|485308|fgenesh2_kg.5__1300__AT3G49510.1 60.2 3e-08
> Ahg333398 jgi|Araly1|333398|fgenesh1_pm.C_scaffold_769000001
Length=924
Score = 693 bits (375), Expect = 0.0
Identities = 622/736 (85%), Gaps = 38/736 (5%)
Strand=Plus/Plus
Query 215 TGAGCGTCAATCTCCATGGCATTCAAAACAATGTTGATCCATCTATAGAGTTTAAATGTA 274
||| ||||||||||||||||||| |||||||||||||||||||||||||| |||| |||
Sbjct 171 TGA-CGTCAATCTCCATGGCATTGAAAACAATGTTGATCCATCTATAGAGGTTAAGGGTA 229
Query 275 AACTTATCAGCCTAGATGATTCAGATCGAATAGTCGATTTTCACCCAGTTTATGAGACTG 334
||||||| |||||| | | | || | | | || | | | |||||||||| ||
Sbjct 230 AACTTATTAGCCTA-AACA-T-AGCT-G---A-TC-A-----AATC-GTTTATGAGATTG 274
Query 335 AAATTTACAACTTTCACTCTGATTCATGGAAGAATATTGTTGATTCCACTCCTGAAGGGG 394
|||||||||||||| ||||||||||||||||| ||||||||| ||||||||| ||||
Sbjct 275 AAATTTACAACTTTAACTCTGATTCATGGAAG---GTTGTTGATTTCACTCCTGACGGGG 331
Query 395 ATATGCAATATTTTAAACAAGGCGTGTCTCTTAAGGGAAATACTTACTGGTTTGCTAGAA 454
||| || | |||| ||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 332 ATAGGCGCTTTTTTGTACATGGCGTGTCTCTCAAGGGAAATACTTACTGGTTTGCTAGAG 391
Query 455 AGTATGTGATCTATGAAGGAGGAC---AAG-AA-GCA-T--G-GGTTAGTTTCTTGATTT 505
||||||||| |||||||| | || ||| || | | | | || ||||||||||||||
Sbjct 392 AGTATGTGAGGTATGAAGGTGTACAAGAAGTAATGAATTACGTGGCTAGTTTCTTGATTT 451
Query 506 GTTTTGATTTTACAACAGAGAGATTTGGACCGCGACTTACTCTGCCTTTTGACTATTCT- 564
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |
Sbjct 452 GTTTTGATTTTACAACAGAGAGATTTGGACCGCGACTTCCTCTGCCTTTTGAC-ATTTTT 510
Query 565 ACAAAGGAGAGTGTGAGTCTCTTGAGTGCTAGAGAAGAGCAGCTTGTGCTGTTATATCAC 624
| || || | ||||||||||| ||||| ||||||||||||||||||| ||||| |||||
Sbjct 511 ATAATCGATAATGTGAGTCTCTCGAGTGTTAGAGAAGAGCAGCTTGTGGTGTTACATCAC 570
Query 625 CCCTGGTTTACAAT-GATGATGGAGATATGGGTTAGTAATAAGATTGAGC-TCAATGCGG 682
| ||| | | ||| || |||||||||||||||||||||||||||||||| | ||||| |
Sbjct 571 CAATGGATGA-AATTGAGGATGGAGATATGGGTTAGTAATAAGATTGAGCCT-AATGCAG 628
Query 683 TGTCATGGATAAAGTTCTTAGAGGTTAACATGATAACATTCCCTC-ATTATCGGTTTAGT 741
|||| |||| |||||| ||||||||||| |||| | |||| |||| || |||| ||| ||
Sbjct 629 TGTCGTGGAGAAAGTTGTTAGAGGTTAATATGAGACCATTACCTCGAT-ATCGTTTTCGT 687
Query 742 TTTCACCATGTGAGTTTCTTCATTGACAAGAAGAATAAGGTTGTAGTGGTTTTGGATAAA 801
|| |||||| |||||||||||||||| ||||||||||||| || |||||| ||||||||
Sbjct 688 CTTGACCATGGGAGTTTCTTCATTGACGAGAAGAATAAGGTCGTTGTGGTTCTGGATAAA 747
Query 802 GACAAAGAGACGCGTT-CTCGCAACTTAGGATATTTCATTGGAGATGATGGATATTTCAA 860
||| |||||||| | | |||||||||| |||||||||||||| ||||||||||||||
Sbjct 748 GACGAAGAGACG-GAAACCCGCAACTTAGTTTATTTCATTGGAGAGGATGGATATTTCAA 806
Query 861 AGAAGTGGAACTGGGAGGATCTAGAGACAGAAATGGTTATCCATTTGTGTTCTCTTATGT 920
||||||||||||||||| |||||||| || |||||||| |||||||||| |||||||||
Sbjct 807 AGAAGTGGAACTGGGAGAATCTAGAGGCAAAAATGGTTCTCCATTTGTGAGCTCTTATGT 866
Query 921 TCCAAGTTCAGTGCAA 936
||||||||||||||||
Sbjct 867 TCCAAGTTCAGTGCAA 882
Score = 237 bits (128), Expect = 1e-61
Identities = 161/176 (91%), Gaps = 6/176 (3%)
Strand=Plus/Plus
Query 1 ATGGCGATTTC-AGATCTTCCTAGGGATTTGGTAGAGGAGGTGCTCTCTAGAG-TTCCGG 58
||||| || || | |||||||||||||||||||||| |||||||||||||| | || |||
Sbjct 1 ATGGCTATGTCTA-ATCTTCCTAGGGATTTGGTAGAAGAGGTGCTCTCTAG-GCTTTCGG 58
Query 59 TGACATCT-CTGAGAACAGTGCGATCTACTTGCAAAAAATGGAACATTATATCCAAAGAC 117
|||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 59 TGACATCTAC-GAGAGCAGTGCGATCTACTTGCAAAAAATGGAACATTATATCCAAAGAC 117
Query 118 GAGAGCTTTACAAAGAAGCACGTTGGTCAAGCAAACGCAGCAGCAAGGGAAAGTGA 173
||||||||||||| |||| ||| || ||||||||||||||||||||||||||||||
Sbjct 118 GAGAGCTTTACAACGAAGTACGGTGCTCAAGCAAACGCAGCAGCAAGGGAAAGTGA 173
> Ahg318446 jgi|Araly1|318446|fgenesh1_pm.C_scaffold_3001462
Length=918
Score = 449 bits (243), Expect = 1e-125
Identities = 360/416 (87%), Gaps = 10/416 (2%)
Strand=Plus/Plus
Query 526 AGATTTGGACCGCGACTTACTCTGCCTTTTGACTA-TTCTACAAAGGAGAGTGTGAGTCT 584
|||||||||||||||||| |||||||||||||| | || || || || | |||||||||
Sbjct 466 AGATTTGGACCGCGACTTCCTCTGCCTTTTGAC-ATTTTTATAATCGATAATGTGAGTCT 524
Query 585 CTTGAGTGCTAGAGAAGAGCAGCTTGTGCTGTTATATCACCCCTGGTTTACAA-TGATGA 643
|| ||||| ||||||||||||||||||| ||||| |||||| ||| | | || ||| ||
Sbjct 525 CTCGAGTGTTAGAGAAGAGCAGCTTGTGGTGTTACATCACCAATGGATGA-AATTGAGGA 583
Query 644 TGGAGATATGGGTTAGTAATAAGATTGAGC-TCAATGCGGTGTCATGGATAAAGTTCTTA 702
|||||||||||||||||||||||||||||| | ||||| ||||| |||| |||||| |||
Sbjct 584 TGGAGATATGGGTTAGTAATAAGATTGAGCCT-AATGCAGTGTCGTGGAGAAAGTTGTTA 642
Query 703 GAGGTTAACATGATAACATTCCCTC-ATTATCGGTTTAGTTTTCACCATGTGAGTTTCTT 761
|||||||| |||| | |||| |||| || |||| ||| || || |||||| |||||||||
Sbjct 643 GAGGTTAATATGAGACCATTACCTCGAT-ATCGTTTTCGTCTTGACCATGGGAGTTTCTT 701
Query 762 CATTGACAAGAAGAATAAGGTTGTAGTGGTTTTGGATAAAGACAAAGAGACGCGTT-CTC 820
||||||| ||||||||||||| || |||||| ||||||||||| |||||||| | | |
Sbjct 702 CATTGACGAGAAGAATAAGGTCGTTGTGGTTCTGGATAAAGACGAAGAGACG-GAAACCC 760
Query 821 GCAACTTAGGATATTTCATTGGAGATGATGGATATTTCAAAGAAGTGGAACTGGGAGGAT 880
||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 761 GCAACTTAGTTTATTTCATTGGAGAGGATGGATATTTCAAAGAAGTGGAACTGGGAGAAT 820
Query 881 CTAGAGACAGAAATGGTTATCCATTTGTGTTCTCTTATGTTCCAAGTTCAGTGCAA 936
|||||| || |||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 821 CTAGAGGCAAAAATGGTTCTCCATTTGTGAGCTCTTATGTTCCAAGTTCAGTGCAA 876
Score = 440 bits (238), Expect = 8e-123
Identities = 411/488 (84%), Gaps = 38/488 (8%)
Strand=Plus/Plus
Query 1 ATGGCGATTTC-AGATCTTCCTAGGGATTTGGTAGAGGAGGTGCTCTCTAGAG-TTCCGG 58
||||| || || | |||||||||||||||||||||| |||||||||||||| | || |||
Sbjct 1 ATGGCTATGTCTA-ATCTTCCTAGGGATTTGGTAGAAGAGGTGCTCTCTAG-GCTTTCGG 58
Query 59 TGACATCT-CTGAGAACAGTGCGATCTACTTGCAAAAAATGGAACATTATATCCAAAGAC 117
|||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 59 TGACATCTAC-GAGAGCAGTGCGATCTACTTGCAAAAAATGGAACATTATATCCAAAGAC 117
Query 118 GAGAGCTTTACAAAGAAGCACGTTGGTCAAGCAAACGCAGCAGCAAGGGAAAGTGAGTTT 177
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 118 GAGAGCTTTACAACGAAGCACGTTGCTCAAGCAAACGCAGCAGCAAGGGAAAGTGAGTTT 177
Query 178 CAGGTGGTAATAATGACGGAATACAAAG-TTTATCTAATGAGCGTCAATCTCCATGGCAT 236
||||||||||| |||| |||||| || | ||||| |||||||||||||||||||||||||
Sbjct 178 CAGGTGGTAATGATGATGGAATATAA-GCTTTATTTAATGAGCGTCAATCTCCATGGCAT 236
Query 237 TCAAAACAATGTTGATCCATCTATAGAGTTTAAATGTAAACTTATCAGCCTAGATGATTC 296
| |||||||||||||||||||||||||| |||| |||||||||| |||||| | ||
Sbjct 237 TGAAAACAATGTTGATCCATCTATAGAGGTTAAGGGTAAACTTATTAGCCTAAAC-AT-- 293
Query 297 AGATCGAATAGTCGATTTTCACCCAGTTTATGAGACTGAAATTTACAACTTTCACTCTGA 356
|| | || | | | | | |||||||||| |||||||||||||||| |||||||
Sbjct 294 AGCT-GA-T---CAAAT--C-----GTTTATGAGATTGAAATTTACAACTTTAACTCTGA 341
Query 357 TTCATGGAAGAATATTGTTGATTCCACTCCTGAAGGGGATATGCAATATTTTAAACAAGG 416
|||||||||| | | || || | ||| ||| || | |||| ||| ||
Sbjct 342 TTCATGGAAGGC----GCT--TT--AC----G--GGG-ATAGGCGCTTTTTTGTACATGG 386
Query 417 CGTGTCTCTTAAGGGAAATACTTACTGGTTTGCTAGAAAGTATGTGATCTATGAAGGAGG 476
||||||||| ||||||||||||||||||||||||||| ||||||||| |||||||| |
Sbjct 387 CGTGTCTCTCAAGGGAAATACTTACTGGTTTGCTAGAGAGTATGTGAGGTATGAAGGTGT 446
Query 477 ACAAGAAG 484
||||||||
Sbjct 447 ACAAGAAG 454
> Ahg913019 jgi|Araly1|913019|Al_scaffold_0001_3273
Length=1800
Score = 62.1 bits (33), Expect = 7e-09
Identities = 45/51 (88%), Gaps = 0/51 (0%)
Strand=Plus/Plus
Query 505 TGTTTTGATTTTACAACAGAGAGATTTGGACCGCGACTTACTCTGCCTTTT 555
||||||||||||||||||||||||||||||| | ||| ||||||| |||
Sbjct 1285 TGTTTTGATTTTACAACAGAGAGATTTGGACAGATTCTTCCTCTGCCGTTT 1335
> Ahg485308 jgi|Araly1|485308|fgenesh2_kg.5__1300__AT3G49510.1
Length=2011
Score = 60.2 bits (32), Expect = 3e-08
Identities = 32/32 (100%), Gaps = 0/32 (0%)
Strand=Plus/Plus
Query 505 TGTTTTGATTTTACAACAGAGAGATTTGGACC 536
||||||||||||||||||||||||||||||||
Sbjct 719 TGTTTTGATTTTACAACAGAGAGATTTGGACC 750
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34958714889
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5