BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G16830.1
Length=3812
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479149 jgi|Araly1|479149|fgenesh2_kg.3__1850__AT3G16830.1 6032 0.0
Ahg890655 jgi|Araly1|890655|Al_scaffold_0007_2641 3657 0.0
> Ahg479149 jgi|Araly1|479149|fgenesh2_kg.3__1850__AT3G16830.1
Length=3773
Score = 6032 bits (3266), Expect = 0.0
Identities = 3626/3796 (96%), Gaps = 40/3796 (1%)
Strand=Plus/Plus
Query 5 TTTTCTTAATGTTCGCTTTGCGACGCGAGGAAATGCAACCTTGAAACCCTAGAAAACTCA 64
||||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2 TTTTCTTCATTTTCGCTTTGCGACGCGAGGAAATGCAACCTTGAAACCCTAGAAAAC-CA 60
Query 65 TTCTCAACTACGACTAAATCGATTTCGCAAACTTTGACCTACCCTTCTTTCACGATAAAC 124
||| |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 61 TTC-CAACTACGACTAAATCGATTTCACAAACTTTGACCTACCCTTCTTTCACCATAAAC 119
Query 125 CCAGATCGCTTAAATTCCTTGAATTTCTTCTTCTGAGAGTTTTAGGAAAAAATGTCGTCT 184
||||||||||| ||||||||||| | ||| || | |||||||||||||
Sbjct 120 CCAGATCGCTTTAATTCCTTGAA-----T-TTC---------TA-GCAAAAATGTCGTCT 163
Query 185 TTGAGCAGAGAGTTAGTTTTCTTAATTCTCCAGTTCTTAGATGAGGAGAAGTTCAAGGAA 244
||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 164 TTGAGCAGAGAGTTAGTTTTCCTAATCCTCCAGTTCTTAGATGAGGAGAAGTTCAAGGAA 223
Query 245 TCTGTTCACAAGCTAGAGCAAGAATCTGGCTTCTTCTTTAACATTAAGTACTTTGAAGAG 304
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 224 TCTGTTCACAAGCTAGAGCAAGAATCTGGCTTCTTTTTTAATATTAAGTACTTTGAAGAG 283
Query 305 AAAGCTCTTGCTGGAGAGTGGGATGAAGTGGAGAAGTATCTTTCTGGTTTCACTAAAGTC 364
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 284 AAAGCTCTTGCTGGAGAGTGGGACGAAGTGGAGAAGTATCTTTCTGGTTTCACTAAAGTC 343
Query 365 GATGATAATCGTTACTCTATGAAAATCTTCTTTGAGATTAGGAAGCAAAAGTATCTCGAA 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 344 GATGATAATCGTTACTCTATGAAAATCTTCTTTGAGATTAGGAAGCAAAAGTATCTCGAA 403
Query 425 GCTCTAGATCGAAATGACAGAGCAAAAGCTGTTGAGATATTAGCCAAAGACTTGAAAGTT 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 404 GCTCTAGATCGAAATGACAGAGCAAAAGCTGTTGAGATATTAGCCAAAGACTTGAAAGTT 463
Query 485 TTCGCTACATTTAACGAGGAGCTTTACAAGGAGATTACTCAGCTGCTTACTCTGGAGAAT 544
||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 464 TTCGCGACCTTTAACGAGGAGCTTTACAAGGAGATTACTCAGCTGCTAACTCTGGAGAAT 523
Query 545 TTTAGGGAAAATGAGCAACTGTCGAAATATGGTGATACTAAATCTGCAAGGTCTATAATG 604
|||||||||||||||||| |||| |||||||||||||| ||||| || ||||||||||||
Sbjct 524 TTTAGGGAAAATGAGCAATTGTCTAAATATGGTGATACGAAATCAGCGAGGTCTATAATG 583
Query 605 TATACTGAGTTGAAGAAATTGATTGAGGCGAATCCTCTGTTTCGAGAGAAGCTAGCCTTC 664
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 584 TATACTGAGTTGAAGAAATTGATTGAGGCAAATCCTCTGTTTCGAGAGAAGCTAGCCTTC 643
Query 665 CCCAGTTTCAAAGCTTCTCGCCTGCGAACTTTGATCAATCAAAGCTTAAACTGGCAGCAT 724
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 644 CCCAGTTTCAAAGCTTCTCGCCTGCGAACTTTGATCAATCAAAGCTTAAACTGGCAGCAC 703
Query 725 CAGCTATGTAAAAATCCAAGGCCTAATCCTGACATCAAGACATTGTTCTTGGATCACTCT 784
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 704 CAGCTATGTAAAAATCCAAGGCCTAATCCTGACATCAAGACATTGTTCTTGGATCACTCT 763
Query 785 TGCTCACCATCAAACGGTGCTCGTGCACTCACTCCTGTCAATCTTCCAGTTGCTGCTGTT 844
|||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 764 TGCTCACCATCAAATGGTGCTCGTGCTCTCACTCCTGTGAATCTTCCAGTTGCTGCTGTT 823
Query 845 GCAAGACCTTCAAACTTTGTTCCTCTTGGAGTGCATGGTGGACCCTTTCAATCTAATCCT 904
|||||||||||||||||||||||||||||||| ||||||||||| |||||| ||| |||
Sbjct 824 GCAAGACCTTCAAACTTTGTTCCTCTTGGAGTACATGGTGGACCGTTTCAACCTAGCCCT 883
Query 905 GCTCCGGCTCCTAATGCCAATGCTTTAGCTGGATGGATGGCAAACCCAAATCCTTCTTCA 964
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 884 GCCCCGGCTCCTAATGCCAATGCTTTAGCTGGATGGATGGCAAACCCAAATCCTTCTTCA 943
Query 965 TCAGTTCCATCTGGTGTTGTCGCTGCTTCCCCATTTCCTATGCAGCCAAGTCAAGTTAAT 1024
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 944 TCAGTTCCATCTGGTGTCGTCGCTGCTTCCCCATTTCCTATGCAGCCAAGTCAAGTTAAT 1003
Query 1025 GAGCTGAAACACCCTCGGGCACCGTCTAACTCTCTAGGATTAATGGATTATCAAAGTGCT 1084
| | |||||||||||||||||||||||||||||||||| || ||||||||||||| ||||
Sbjct 1004 GTGTTGAAACACCCTCGGGCACCGTCTAACTCTCTAGGGTTGATGGATTATCAAAATGCT 1063
Query 1085 GATCACGAGCAACTCATGAAACGCTTACGGTCTGCACAAACATCCAACGAGGTCACATAT 1144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1064 GATCACGAGCAACTCATGAAACGCTTACGGTCTGCACAAACATCCAACGAGGTCACATAT 1123
Query 1145 CCTGCTCATTCTCATCCCCCTGCGTCACTTGATGACCTCCCTAGAAATGTAGTGAGTACA 1204
||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1124 CCTGCCCATTCTCATCCCGCTGCGTCACTTGATGACCTCCCTAGAAATGTCGTGAGCACA 1183
Query 1205 ATTCGCCAAGGGTCGGTGGTGATAAGCATGGATTTTCACCCTTCTCATCACACTTTGCTC 1264
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1184 ATTCGCCAAGGGTCGGTGGTGATAAGCATGGATTTTCACCCTTCTCATCACACTTTACTC 1243
Query 1265 GCTGTTGGTTGTTCAAGCGGCGAAGTCACCTTGTGGGAAGTTGGATCCAGAGAAAAGGTT 1324
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1244 GCTGTTGGTTGTTCAAGCGGCGAAGTCACCTTGTGGGAAGTTGGATCCAGAGAGAAGGTT 1303
Query 1325 GTCACAGAACCTTTCAAGATATGGAATATGGCGGCTTGTTCTGTGATCTTCCAGGGTTCT 1384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1304 GTCACAGAACCTTTCAAGATATGGAATATGGCGGCTTGTTCTGTGATCTTCCAGGGTTCT 1363
Query 1385 ATAGTCAAAGAGCCATCGATATCCGTCACTCGTGTAGCATGGAGCCCAGATGGAAACTTG 1444
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1364 ATAGTCAAAGAGCCATCGATATCTGTCACTCGTGTAGCATGGAGCCCAGATGGAAATTTG 1423
Query 1445 CTTGGGGTTTCTTTTACTAAACATCTGATCCATGTATATGCTTACCAAGGCTCAGACCTA 1504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1424 CTTGGGGTTTCTTTTACTAAACATCTGATCCATGTATATGCTTACCAAGGCTCAGACCTA 1483
Query 1505 CGTCAACACCTCGAGATTGATGCTCATGTAGGCTGTGTGAATGACTTGGCGTTCGCCCAC 1564
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1484 CGTCAGCACCTCGAGATTGATGCTCATGTAGGCTGTGTGAATGACTTGGCGTTCGCCCAC 1543
Query 1565 CCAAATAAGCAAATGTGTGTTGTGACTTGTGGGGATGACAAATTGATTAAGGTGTGGGAT 1624
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1544 CCAAATAAGCAAATGTGTGTTGTGACTTGTGGTGATGACAAATTGATTAAGGTGTGGGAT 1603
Query 1625 TTGAGTGGGAAGAAGCTCTTCACCTTTGAAGGGCACGAGGCACCAGTTTATTCCATTTGC 1684
||||||||||||||||| ||||| |||||||| ||||||||||| |||||||||||||||
Sbjct 1604 TTGAGTGGGAAGAAGCTTTTCACTTTTGAAGGCCACGAGGCACCGGTTTATTCCATTTGC 1663
Query 1685 CCTCACCAGAAGGAAAATATTCAGTTTATATTCTCAACCGCTCTTGATGGAAAGATCAAG 1744
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1664 CCTCACCAGAAGGAAAATATTCAGTTTATATTCTCAACAGCTCTTGATGGAAAGATCAAG 1723
Query 1745 GCGTGGCTCTATGATAATGTTGGTTCTCGGGTTGATTATGACGCACCGGGACAGTGGTGT 1804
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1724 GCGTGGCTCTATGATAATGTTGGTTCTCGGGTTGATTACGACGCACCAGGACAGTGGTGT 1783
Query 1805 ACAACAATGCTCTACAGTGCTGATGGAAGCAGACTATTTTCTTGTGGGACGAGTAAAGAA 1864
||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 1784 ACAACAATGCTCTACAGTGCTGATGGAAGCAGATTATTTTCTTGTGGTACGAGTAAAGAG 1843
Query 1865 GGAGACTCTTTCCTCGTCGAGTGGAATGAGAGTGAAGGTGCCCTAAAGAGGACATATTTA 1924
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 1844 GGAGACTCTTTCCTCGTTGAGTGGAATGAGAGCGAAGGTGCCCTAAAGAGGACATATTTA 1903
Query 1925 GGCTTTAGGAAGAAATCAGCTGGAGTTGTTCAGTTTGATACAACCCGTAACCGTTTCTTG 1984
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1904 GGCTTTAGGAAGAAATCACCTGGAGTTGTTCAGTTTGATACAACCCGTAACCGTTTCTTG 1963
Query 1985 GCTGTTGGTGAAGACAATCAAATAAAATTCTGGAACATGGACAATACAAATCTTTTGACA 2044
|||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1964 GCTGTTGGTGAAGACAATCATGTAAAATTCTGGGACATGGACAATACAAATCTTTTGACA 2023
Query 2045 GTTGTTGAGGCTGAAGGTGGACTTCCGAATCTACCCCGATTGAGATTCAACAAGGATGGG 2104
||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2024 ACTGTTGAGGCTGAAGGAGGACTTCCGAATCTACCCCGACTGAGATTCAACAAGGATGGG 2083
Query 2105 AATCTTCTTGCAGTTACTACAGCAGATAATGGATTCAAGATCCTTGCAAATACTGATGGT 2164
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2084 AATCTTCTTGCAGTTACTACAGCAGATAACGGATTCAAGATCCTTGCAAATACTGATGGT 2143
Query 2165 CTCAGAACCTTAAGAGCATTTGAAGCGCGGTCTTTTGAAGCATCTAAAGCATCCATTGAT 2224
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2144 CTCAGAACATTAAGAGCATTTGAAGCGCGGTCTTTTGAAGCATCTAAAGCATCCATTGAT 2203
Query 2225 ATGAAGGTATCCACCTCCGCAATGGCTTCAAGCATCAGCCCCGCTATTGGTAAAATTGAA 2284
|||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 2204 ATGAAGGTATCCCCCTCCGCAATGGCTACAAGCATCAGCCCAGCTATTGGTAAAATTGAA 2263
Query 2285 CACATGGACGCAGGCTCTCCTGCAAGGCCAACCCCAATTCCTAATGGAATTGAGGCAATG 2344
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2264 CACATGGACACAGACTCTCCTGCAAGGCCAACCCCAATTCCTAATGGAATTGAGGCAATG 2323
Query 2345 TCAAGAACTATGGAAAAGCCAAGAAACTTGGACTCTGTTGATAAGTCTAAACCTTTAGAG 2404
||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||
Sbjct 2324 TCAAGAACTATGGAAAAGCCAAGAAACGTGGACCCTGTTGATAAGTCTAAAACTTTAGAG 2383
Query 2405 CTCACAGAAATTGTTGATCCGACTCAGTGCCGACAAGTGA-CAATGCCAGATAGCAAGGA 2463
|||||||||||||||||||||||||||||||||||||| | || ||||||||||||||||
Sbjct 2384 CTCACAGAAATTGTTGATCCGACTCAGTGCCGACAAGTAAACA-TGCCAGATAGCAAGGA 2442
Query 2464 CTCTGTTAGCAAGGTTGCTCGGCTTCTTTACACAAATTCTGGCGTTGGTGTTTTGGCTCT 2523
|||||||||||||||||||||||||| || ||||||||||| || ||||||||||||||
Sbjct 2443 TTCTGTTAGCAAGGTTGCTCGGCTTCTGTATACAAATTCTGGTGTCGGTGTTTTGGCTCT 2502
Query 2524 TGGATCAAATGGTGTTCAAAGACTATGGAAGTGGATCCGCAATGAGCAAAATCCAACTGG 2583
||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2503 TGGATCAAATGGTGTCCAAAGACTATGGAAGTGGAGCCGCAATGAGCAAAATCCAACTGG 2562
Query 2584 GAAGGCAACTGCTAGTGTAACTCCACAGCATTGGCAGCCAAACAGCGGTCTCCTAATGGC 2643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2563 GAAGGCAACTGCTAGTGTAACTCCACAGCATTGGCAGCCAAACAGCGGTCTCCTAATGGC 2622
Query 2644 AAATGATGTTCCCGAGAATCCTGAAGGGAG-TGTTCCGTGTATAGCACTTTCCAAGAATG 2702
|||||||||||| ||||||||||||||| | ||||||||||||||| ||||| |||||||
Sbjct 2623 AAATGATGTTCCTGAGAATCCTGAAGGG-GCTGTTCCGTGTATAGCGCTTTCTAAGAATG 2681
Query 2703 ACTCATACGTAATGTCAGCTTGTGGTGGAAAGGTTTCGTTATTCAATATGATGACTTTCA 2762
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2682 ACTCATATGTAATGTCAGCTTGTGGTGGAAAAGTTTCGTTATTCAATATGATGACTTTCA 2741
Query 2763 AAGTAATGACAACTTTCATGCCACCGCCACCAGCTTCAACTTTCTTGGCATTTCATCCTC 2822
||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 2742 AAGTAATGACAACGTTCATGCCACCACCACCAGCTTCAACTTTCTTGGCGTTTCATCCTC 2801
Query 2823 AAGATAATAATATTATTGCAATCGGGATGGAGGACTCGAGTATACATATTTACAACGTCA 2882
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2802 AAGATAATAACATTATTGCAATCGGGATGGAGGACTCGAGTATACATATTTACAACGTCA 2861
Query 2883 GGGTAGATGAGGTGAAAACAAAGTTGAAAGGTCACCAGAAGCACATAACTGGTCTAGCAT 2942
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2862 GGGTAGATGAGGTGAAAACAAAGTTGAAAGGTCACCAGAAGCACATAACTGGTCTAGCAT 2921
Query 2943 TCTCTACCGCGCTCAATATTCTTGTCTCTTCTGGTGCCGATGCTCAGCTCTTCTTCTGGA 3002
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2922 TCTCTACCGCACTCAATATTCTTGTCTCTTCTGGTGCCGATGCTCAGCTCTTCTTCTGGA 2981
Query 3003 CCGCTGACTCGTGGGAGAAAAAGAAATCTTCAGCGATACAGCTACCACCTGGCAAAGCAC 3062
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 2982 CCGCTGACTCGTGGGAGAAGAAGAAATCTTCAGCGATACAGCTACCACCTGGAAAAGCAC 3041
Query 3063 CAGTAGGCGACACACGAGTCCAATTCCACAACGACCAAATCCAGTTATTGGTTTCACATG 3122
||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 3042 CAGTAGGTGACACGCGAGTCCAATTCCATAACGACCAAATCCAGTTATTGGTTTCACATG 3101
Query 3123 AGACACAGCTCGCCATTTACGATGCTTCGAAGATGGAATGCATTCATAAGTGGGTGCCCC 3182
|||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 3102 AGACACAGCTAGCCATTTACGATGCTGCGAAGATGGAATGCATTCATAAGTGGGTGCCAC 3161
Query 3183 AAGAAGCTCTCTCTTCGCCCATAACCTCTGCATCTTACTCATGCAACAGCCAACTGGTTT 3242
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3162 AAGACGCTCTCTCGTCGCCCATAACCTCTGCATCTTACTCATGCAACAGCCAACTGGTTT 3221
Query 3243 ACGCGTCATTCGCTGATGGAAACATTGCAGTCTTTGATGCTGAATCCTTGAGACTCAGAT 3302
|| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 3222 ACTCGTCATTCGCTGATGGAAACATTGGAGTCTTTGATGCTGAATCCTTGAGACTCAGAT 3281
Query 3303 GCCGCATTGCCCCATCAGCCTACATGCCTCAACCTACACCAAACAGTGCACCGATT-TTC 3361
| ||||||||||||||||| |||||||||||||| ||||| |||||||||||||| |||
Sbjct 3282 GTCGCATTGCCCCATCAGCTTACATGCCTCAACCAACACCGAACAGTGCACCGATCATTC 3341
Query 3362 CCACAGGTGATCACAGCTCATCCACAAGAACCGAATCAATTAGCGGTTGGACTGTCTGAT 3421
| ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 3342 C-ACAGGTGATCACAACTCATCCACAAGAACCGAATCAATTAGCGGTTGGACTCTCTGAT 3400
Query 3422 GGTTCGGTTAAAGTGA-TTGAGCCATCAGAACTTTCTAGAAGATGGGGTGTTGGCGTCGC 3480
|||||||||||||| | |||||||||| |||||||||||||||||||||||||||||| |
Sbjct 3401 GGTTCGGTTAAAGT-ACTTGAGCCATCGGAACTTTCTAGAAGATGGGGTGTTGGCGTCAC 3459
Query 3481 AGCTGGTTCAGATAAAGCAGGGACTGAAAATGGACGGCCGTCTAGTTCATCAGCGGCTAA 3540
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3460 GGCCGGTTCAGATAAAGCAGGGACTGAAAATGGACGGCCGTCTAGTTCATCAGCGGCTAA 3519
Query 3541 CAACTCAAGTTCGGATCAGATTCAAAGGTAAAAATAGTTTATGTCAGTTAAGTTAGTTGA 3600
|||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 3520 CAACTCAAGTTCAGATCAGATTCAAAGGTAAAAATAGCTGATGTCAGTTAAGTTAGTTGA 3579
Query 3601 CATATCTCTTGTTATTTTGGATTGTAAAGTTGTGATAGCTTGTGCTGTTTTTGTAAATGA 3660
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3580 CATATCTTTT-TTATTTTGGATTGTAAAGTTGTGATAGCTTGTGCTGTTTTTGTAAATGA 3638
Query 3661 GATTCTCAAATTAAATCAGTAGGCGCAATAACAGTT-T-ATTTTATATTTTT-----CGG 3713
|||||| |||||||||||||||||| |||||||||| | ||||| ||||||| |||
Sbjct 3639 GATTCTTAAATTAAATCAGTAGGCGTAATAACAGTTGTTATTTTTTATTTTTTATTTCGG 3698
Query 3714 CGTTTTAACAGTTTTA-AGATGGCTATA---CTCTTGAATGTAGTAGCTCTTAAA-TCTA 3768
|||| ||||||||||| | | ||||||| |||||||||||||| ||| |||| | ||
Sbjct 3699 CGTTATAACAGTTTTAGAAA-GGCTATAATACTCTTGAATGTAGTGGCTTTTAATGTGTA 3757
Query 3769 TGGATTTGTCAAAAAT 3784
||||||||||||||||
Sbjct 3758 TGGATTTGTCAAAAAT 3773
> Ahg890655 jgi|Araly1|890655|Al_scaffold_0007_2641
Length=3378
Score = 3657 bits (1980), Expect = 0.0
Identities = 2959/3428 (86%), Gaps = 82/3428 (2%)
Strand=Plus/Plus
Query 176 ATGTCGTCTTTGAGCAGAGAGTTAGTTTTCTTAATTCTCCAGTTCTTAGATGAGGAGAAG 235
||||| ||| | ||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1 ATGTCATCTCTAAGCAGAGAGTTAGTTTTCTTAATTCTCCAGTTCTTAGATGAAGAAAAG 60
Query 236 TTCAAGGAATCTGTTCACAAGCTAGAGCAAGAATCTGGCTTCTTCTTT-AACATT-AAGT 293
||||| ||||||||||||||||| ||||||||||| || | ||| ||| || || ||||
Sbjct 61 TTCAAAGAATCTGTTCACAAGCTTGAGCAAGAATCGGGATACTT-TTTCAA-TTTGAAGT 118
Query 294 ACTTTGAAGAGAAAGCTCTTGC-TGGAGAGTGGGATGAAGTGGAGAAGTATCTTTCTGGT 352
||||||||||||| ||| |||| ||| |||||||| ||||||||||||||||||||||||
Sbjct 119 ACTTTGAAGAGAAGGCT-TTGCTTGGGGAGTGGGACGAAGTGGAGAAGTATCTTTCTGGT 177
Query 353 TTCACTAAAGTCGATGATAATCGTTACTCTATGAAAATCTTCTTTGAGATTAGGAAGCAA 412
|||||||| || ||||||||||||||||| |||||||||||||| ||||| |||||||||
Sbjct 178 TTCACTAAGGTTGATGATAATCGTTACTCGATGAAAATCTTCTTCGAGATCAGGAAGCAA 237
Query 413 AAGTATCTCGAAGCTCTAGATCGAAATGACAGAGCAAAAGCTGTTGAGATATTAGCCAAA 472
|||||||||||||| |||||||||||||| || |||||||||||||||||||||| ||||
Sbjct 238 AAGTATCTCGAAGCACTAGATCGAAATGATAGGGCAAAAGCTGTTGAGATATTAG-CAAA 296
Query 473 -GACTTGAAAGTTTTCGCTACATTTAACGAGGAGCTTTACAAGGAGATTACTCAGCTGCT 531
|||||||||||||| || ||||| |||||||||||||||||||| || |||||||| ||
Sbjct 297 GGACTTGAAAGTTTTTGCAACATTCAACGAGGAGCTTTACAAGGAAATCACTCAGCTTCT 356
Query 532 TACTCTGGAGAATTTTAGGGAAAATGAGCAACTGTCGAAATATGGTGATACTAAATCTGC 591
||||||||||||||||||||||||||| || | ||||||||||||||||| ||||| ||
Sbjct 357 TACTCTGGAGAATTTTAGGGAAAATGACCAGTTATCGAAATATGGTGATACCAAATCAGC 416
Query 592 AAGGTCTATAATG-TATACTGAGTTGAAG-AAATTGATTGAGGCGAATCCTCTGTTTCGA 649
||| ||| ||| | | |||||| || |||||||||||||| |||||||||||| ||
Sbjct 417 TAGGGGTATTATGCT-TGGGGAGTTG-AGAAAATTGATTGAGGCAAATCCTCTGTTTAGA 474
Query 650 GAGAAGCTAGCCTTCCCCAGTTTCAAAGCTTCTCGCCTGCGAACTTTGATCAATCAAAGC 709
|||||||| || || |||| |||||| ||||| ||||||||||| |||||||||||||||
Sbjct 475 GAGAAGCTTGCTTTACCCACTTTCAAGGCTTCACGCCTGCGAACCTTGATCAATCAAAGC 534
Query 710 TTAAACTGGCAGCATCAGCTATGTAAAAATCCAAGGCCTAATCCTGACATCAAGACATTG 769
|| || ||||| ||||||||||||||||| |||||||||||||| |||||||| ||||||
Sbjct 535 TTGAATTGGCAACATCAGCTATGTAAAAACCCAAGGCCTAATCCAGACATCAAAACATTG 594
Query 770 TTC-TTGGATCACTCTTGCTCACCATC-AAACGGTGCTCGTGCACTCACTCCTGTCAATC 827
||| | |||||| |||| |||||| | ||| || |||||||||| ||||||||| ||
Sbjct 595 TTCACT-GATCACACTTGTTCACCA-CAAAATGGAGCTCGTGCACCCACTCCTGT---TC 649
Query 828 TTCCAGTTGCTGCTGTTGC-AAGACCTTCAAAC-TTTGTTCCTCTTGGAGTGCATGGTGG 885
||||||||| ||||||||| ||| ||||| ||| | || ||||||||| || ||||||||
Sbjct 650 TTCCAGTTGGTGCTGTTGCAAAG-CCTTC-AACATATGCTCCTCTTGGGGTACATGGTGG 707
Query 886 ACCCTTTCAATCTAATCCTGCTCCGGCTCCTAATGCCAATGCTTTAGCTGGATGGATGGC 945
||| ||||| ||| | |||||||||||||||| || |||||||||||||||||||||||
Sbjct 708 ACCTTTTCAGCCTACTTCTGCTCCGGCTCCTAACGCAAATGCTTTAGCTGGATGGATGGC 767
Query 946 AAACCCAAATCCTTCTTCATCAGTTCCAT-CTGGTGTTGTCG-CTGCTTCCCCATTTCCT 1003
|||||||||||| |||||||||||||| | ||||||||| | || ||||||||||||||
Sbjct 768 AAACCCAAATCCATCTTCATCAGTTCC-TGGTGGTGTTGTGGCCT-CTTCCCCATTTCCT 825
Query 1004 ATGCAGCCAAGTCAAGTTAATGA-GCTGAAACACCCTCGGGCACCGTCTAACTCTCTAGG 1062
|||||||||| ||||||| | ||| |||||||||||| |||| || ||||| || ||
Sbjct 826 ATGCAGCCAAATCAAGTT-GCCATGCTAAAACACCCTCGGCCACCCTCAAACTCCCTTGG 884
Query 1063 ATTAATGGATTATCAAAGTGCTGATCACGAGCAACTCATGAAACGCTTACGGTCTGCACA 1122
| | ||||||||||||||||||||||| |||||||| |||||||| |||||||||| ||
Sbjct 885 AATGATGGATTATCAAAGTGCTGATCATGAGCAACTTATGAAACGTTTACGGTCTGGACC 944
Query 1123 AACAT-CCAACGAGGTCACATATCCTGCTCATTCTCATCC-CCCTGCGTCACTTGATGAC 1180
||| | | |||||||||||||||||||||||||| || || || ||||||||||||
Sbjct 945 AAC-TGGTGATGAGGTCACATATCCTGCTCATTCTCAGCCTACC-GCCTCACTTGATGAC 1002
Query 1181 CTCCCTAGAAATGTAGTGAGTACAATTCGCCAAGGGTCGGTGGTGATAAGCATGGATTTT 1240
|||||| ||||||||||||||||||| ||||||||||| | ||||| |||||||||||||
Sbjct 1003 CTCCCTCGAAATGTAGTGAGTACAATGCGCCAAGGGTCAGCGGTGACAAGCATGGATTTT 1062
Query 1241 CACCCTTCTCATCACACTTTGCTCGCTGTTGGTTGTTCAAGCGGCGAAGTCACCTTGTGG 1300
|||||||| |||||||| ||||| ||||||||||||| ||||||||| |||||||||||
Sbjct 1063 CACCCTTCCCATCACACGCTGCTCACTGTTGGTTGTTCCAGCGGCGAATTCACCTTGTGG 1122
Query 1301 GAAGTTGGATCCAGAGAAAAGGTTGTCACAGAACCTTTCAAGATATGGAATATGGCGGCT 1360
||||||||||| ||||| ||| || ||||||| ||||||||||||||||||||||| ||
Sbjct 1123 GAAGTTGGATCTAGAGAGAAGCTTTTCACAGAGCCTTTCAAGATATGGAATATGGCATCT 1182
Query 1361 TGTTCTGTGATCTTCCAGGGTTCTATAGTCAAAGAGCCATCGA-TATCCGTCACTCGTGT 1419
|||||||||||||||||||||||||| ||||| || ||||| | |||| |||| ||||||
Sbjct 1183 TGTTCTGTGATCTTCCAGGGTTCTATTGTCAAGGACCCATC-AGTATCTGTCAGTCGTGT 1241
Query 1420 AGCATGGAGCCCAGATGGAAACTTGC-TTGGGGTTTC-TTTTACTAAACATCTGATCCAT 1477
| ||||||| ||||||||||| || | |||||||| | |||| |||||||||||||||||
Sbjct 1242 ATCATGGAGTCCAGATGGAAA-TTTCATTGGGGTTGCGTTTT-CTAAACATCTGATCCAT 1299
Query 1478 GTATATGCTTACCAAGGCTCAGACCTACGTCAACACCTCGAGATTGATGCTCATGTAGGC 1537
||||| |||||||||| || || |||||||||||||| ||||| ||||| ||||| |||
Sbjct 1300 ATATATTCTTACCAAGGGTCTGAACTACGTCAACACCTAGAGATGGATGCACATGTTGGC 1359
Query 1538 TGTGTGAATGACTTGGCGTTCGCCCACCCAAATAAGCAAATGTGTGTTGTGACTTGTGGG 1597
|||||| |||||||||| ||||||||||||||||||||| | ||| ||||||||||||||
Sbjct 1360 TGTGTGCATGACTTGGCCTTCGCCCACCCAAATAAGCAACTTTGTATTGTGACTTGTGGG 1419
Query 1598 GATGACAAATTGATTAAGGTGTGGGATTTGAGTGGGAAGAAGCTCTT-CACCTTTGAAGG 1656
|| || |||||||| ||||| |||||||||||||||||||| || || |||||||||||
Sbjct 1420 GAAGATAAATTGATAAAGGTCTGGGATTTGAGTGGGAAGAAACT-TTATACCTTTGAAGG 1478
Query 1657 GCACGAGGCACCAGTTTATTCCATTTGCCCTCACCAGAAGGAAAATATTCAGTTTATATT 1716
||||||||| |||||||| ||||| |||||||||||||| |||||||| |||||||||||
Sbjct 1479 GCACGAGGCTCCAGTTTACTCCATCTGCCCTCACCAGAAAGAAAATATCCAGTTTATATT 1538
Query 1717 CTCAACCGCTCTTGATGGAAAGATCAAGGCGTGGCTCTATGATAATGTTGGTTCTCGGGT 1776
|||||| ||||||||||| ||||||||||| ||||||||||||||||| |||||| | ||
Sbjct 1539 CTCAACTGCTCTTGATGGTAAGATCAAGGCTTGGCTCTATGATAATGTGGGTTCTAGAGT 1598
Query 1777 TGATTATGACGCACCGGGACAGTGGTGTACAACAATGCTCTACAGTGCTGATGGAAGCAG 1836
||| ||||| ||||| ||||||||||||||||| ||||| || ||||||||||| |||||
Sbjct 1599 TGACTATGATGCACCAGGACAGTGGTGTACAACTATGCTATATAGTGCTGATGGTAGCAG 1658
Query 1837 ACTATTTTCTTGTGGGACGAGTAAAGAAGGAGACTCTTTCCTCGTCGAGTGGAATGAGAG 1896
| ||||||||||||| || |||||||| ||||| |||||||| || ||||||||||||||
Sbjct 1659 ATTATTTTCTTGTGGAACAAGTAAAGAGGGAGATTCTTTCCTGGTTGAGTGGAATGAGAG 1718
Query 1897 TGAAGGTGCCCTAAAGAGGACATATTTAGGCTTTAGGAAGAAATC-AGCTGGAGT-TGTT 1954
|||||||||| |||||||||||||||| |||||||| |||||||| | | || || |||
Sbjct 1719 TGAAGGTGCCATAAAGAGGACATATTTGGGCTTTAGAAAGAAATCTA-CAGG-GTCGGTT 1776
Query 1955 CAGTTTGATACAACCCGTAACCGTTTCTTGGCTGTTGGTGAAGACAATCAAATAAAATTC 2014
|||||||||||||| || ||||| ||| |||||||||||||||| || ||| ||||||||
Sbjct 1777 CAGTTTGATACAACACGAAACCGATTCATGGCTGTTGGTGAAGATAACCAAGTAAAATTC 1836
Query 2015 TGGAACATGGACAATACAAATCTTTTGACAGTTGTTGAGGCTGAAGGTGGACTTCCGAAT 2074
||| | ||||||||||| ||| | || ||| ||| |||||||| || ||||| ||||
Sbjct 1837 TGGGATATGGACAATACTAATATCTTAACAACTGTGGAGGCTGATGGAGGACTCCCGAGC 1896
Query 2075 CTACCCCGATTGAGATTCAACAAGGATGGGAATCTTCTTGCAGTTACTACAGCAGATAAT 2134
|| ||||||||||||||||||||||| || || |||||||| |||| |||||| |||||
Sbjct 1897 CTTCCCCGATTGAGATTCAACAAGGAAGGAAACCTTCTTGCTGTTAGTACAGCTGATAAC 1956
Query 2135 GGATTCAAGATCCTTGCAAATACTGATGGTCTCAGAACCTTAAGAG-CATTTGAAGCGCG 2193
|||||||| |||||||| ||| |||||||| ||||||||||| | || | ||||| ||
Sbjct 1957 GGATTCAAAATCCTTGCTAATGGGGATGGTCTGAGAACCTTAAGGGTCA-TGGAAGCTCG 2015
Query 2194 GTCTTTTGAAGCATCTAAAGCATCCATTGATATGAAGGTATCCACCTCCGCAATGGCTT- 2252
||||| |||||||| | |||||| | ||||||||||||||| | || ||||||| ||
Sbjct 2016 TTCTTTCGAAGCATCCAGAGCATCGACAGATATGAAGGTATCCTCGTCTGCAATGG-TTA 2074
Query 2253 CAAGCATCAGCCCCGCTATTGGTAAAATTGAACACATGGACGCAGGCTCTCCTGCAAGGC 2312
||| ||| |||| ||||||||||||| ||||| ||||| ||||||||||||||||
Sbjct 2075 CAAACATTGGCCCATCTATTGGTAAAATGGAACAAATGGATATTGGCTCTCCTGCAAGGC 2134
Query 2313 CAACCCCAATTCCTAATGGAATTGAGGCAATGTCAAGAACTATGGAAAAGCCAAGAAACT 2372
||||||| |||||||| ||| |||| |||||||||||||||||||| || |||||||||
Sbjct 2135 CAACCCCTATTCCTAACGGAGTTGATGCAATGTCAAGAACTATGGAGAATCCAAGAAACG 2194
Query 2373 TGGACTCTGTTGATAAGTCTAAACCTTTAGAGCTCACAGAAATTGTTGATCC-GACTCAG 2431
|||| |||||||| ||||| ||||||| ||||||| |||||||||||||| | |||||
Sbjct 2195 TGGAGTCTGTTGAAAAGTCCAAACCTTCGGAGCTCATGGAAATTGTTGATCCTG-CTCAG 2253
Query 2432 TGCCGACAAGTGACAATGCCAGATAGCAAGGACTCTGTTAGCAAGGTTGCTCGGCTTCTT 2491
|||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 2254 TGCCGACAAGTGACCATGCCAGATAGCAAGGATTCGGTTAGCAAGGTTGCTCGGCTTCTT 2313
Query 2492 TACACAAATTCTGGCGTTGGTGTTTTGGCTCTTGGATCAAATGGTGTTCAAAGACTATGG 2551
|| |||||||| || ||||| |||||||||||||| |||||||||| || |||||||||
Sbjct 2314 TATACAAATTCGGGTGTTGGCATTTTGGCTCTTGGAACAAATGGTGTCCAGAGACTATGG 2373
Query 2552 AAGTGGA-TCCGCAATGAGCAAAATCCAACTGGGAAGGCAACTGCTAGTGTAACTCCACA 2610
||||||| | |||| ||||||||||||||||||||||| || |||||||| ||||||||
Sbjct 2374 AAGTGGAGT-CGCAGCGAGCAAAATCCAACTGGGAAGGCTACCGCTAGTGTCACTCCACA 2432
Query 2611 GCATTGGCAGCCAAACAGCGGTCTCCTAATGGCAAATGATGTTCCCGAGAATCCTGAAGG 2670
|||||||||||| ||||| |||||| ||||| ||||||||||||| |||||||||| |||
Sbjct 2433 GCATTGGCAGCCTAACAGTGGTCTCTTAATGACAAATGATGTTCCGGAGAATCCTG-AGG 2491
Query 2671 G-AGTGTTCCGTGTATAGCACTTTCCAAGAATGACTCATACGTAATGTCAGCTTGTGGTG 2729
| | ||| ||||| ||||| ||||| ||||||||||| || |||||||| ||||||||||
Sbjct 2492 GAACTGTGCCGTGCATAGCCCTTTCTAAGAATGACTCGTATGTAATGTCTGCTTGTGGTG 2551
Query 2730 GAAAGGTTTCGTTATTCAATATGATGAC-TTTCAAAGTAATGACAACTTTCATGCCACCG 2788
|||||||||| | || ||||||||||| ||| || |||||||| ||||||||||||||
Sbjct 2552 GAAAGGTTTCACTGTTTAATATGATGACATTT-AAGGTAATGACTACTTTCATGCCACCT 2610
Query 2789 CCACCAGCTTCAACTTTCTTGGCATTTCATCCTCAAGATAATAATATTATTGCAATCGGG 2848
|| || ||||| || ||| ||||||||||||||||||||||||| || |||||||| |||
Sbjct 2611 CCTCCTGCTTCGACGTTCCTGGCATTTCATCCTCAAGATAATAACATCATTGCAATTGGG 2670
Query 2849 ATGGAGGACTCGAGTATACATATTTACAACGTCAGGGTAGATGAGGTGAAAACAAAGTTG 2908
|||||||| || | ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2671 ATGGAGGATTCAACTATTCATATTTACAACGTCAGGGTAGATGAGGTGAAAACAAAGTTG 2730
Query 2909 AAAGGTCACCAGAAGCACATAACTGGTCT-AGCATTCTCTACCGCGCTCAATATTCTTGT 2967
||||| ||||| |||||||| ||||| || |||||||||| || | ||||||||||| ||
Sbjct 2731 AAAGGCCACCAAAAGCACATCACTGG-CTTAGCATTCTCTGCCACTCTCAATATTCTGGT 2789
Query 2968 CTCTTCTGGTGCCGATGCTCAGCTCTTCTTCTGGACCGCTGACTCGTGGGAGAAAAAGAA 3027
||| |||||||| ||||| ||||||||||| |||| |||||||| |||||||| |||||
Sbjct 2790 CTCCTCTGGTGCTGATGCCCAGCTCTTCTTTTGGAGTGCTGACTCATGGGAGAAGAAGAA 2849
Query 3028 ATCTTCAGCGATACAGCTACCACCTGGCAAAG-CACCAGTAGGCGACACACGAGTCCAAT 3086
||||||||| || || |||||| |||| |||| |||||||||||||||| || ||||| |
Sbjct 2850 ATCTTCAGCTATCCAACTACCAGCTGG-AAAGTCACCAGTAGGCGACACTCGTGTCCAGT 2908
Query 3087 TCCACAACGACCAAATCCAGTTATTGGTTTCACATGAGACACAGCTCGCCATTTACGATG 3146
||||||||||||| |||| ||| ||||||| |||||||||||| | ||||| || || |
Sbjct 2909 TCCACAACGACCAGGTCCATTTACTGGTTTCTCATGAGACACAGATAGCCATATATGACG 2968
Query 3147 CTTCGAAGATGGAATGCATTCATAAGTGGGTGCCCCAAGAAGCTCTCTCTTCGCCCATAA 3206
||| |||||||| |||||||| ||||||||||| |||||| | || || || |||||||
Sbjct 2969 GTTCAAAGATGGAGTGCATTCAGAAGTGGGTGCCACAAGAATCGCTATCATCACCCATAA 3028
Query 3207 CCT-CTGCATCTTACTCATGCAACAGCCAACTGGTTTACGCGTCATTCGCTGATGGAAAC 3265
||| | ||||||||||| |||||||| || ||||||||||| ||||| || ||||||| |
Sbjct 3029 CCTGC-GCATCTTACTCCTGCAACAGTCATCTGGTTTACGCATCATTTGCAGATGGAAGC 3087
Query 3266 ATTGCAGTCTTTGATGCTGAATCCTTGAGACTCAGATGCCGCATTGCCCCATCAGCCTAC 3325
|| | |||||| |||||||||| ||||||||||||||| ||||||| |||||||||||||
Sbjct 3088 ATCGGAGTCTTCGATGCTGAATACTTGAGACTCAGATGTCGCATTGGCCCATCAGCCTAC 3147
Query 3326 ATGCCTCAACCTACACCAAACAGTGCACCGATTTTCCCACAGGTGATCACAGCTCATCCA 3385
||||| ||||| |||||||||||||| || || | |||| ||| || || ||||||||
Sbjct 3148 ATGCCCCAACCCACACCAAACAGTGCTCCAATCATGCCACTGGTAATTACTGCTCATCCT 3207
Query 3386 CAAGAACCGAATCAATTAGCGGTTGGACTGTCTGATGGTTCGGTTAAAGTGATTGAG-CC 3444
||||||||||| ||| |||| |||||||| |||||||| ||||||||||| |||| ||
Sbjct 3208 CAAGAACCGAACCAAATAGCTGTTGGACTCTCTGATGGATCGGTTAAAGTTCTTGAAACC 3267
Query 3445 ATCAGAAC-TTTCTAGAAGATGGGGTGTTGGCGTCGCAGCTGGTTCAGATAAAGCAGGGA 3503
| |||| ||| ||||||||||||||||| | | | ||| || |||||||
Sbjct 3268 C-CGGAACCTTT-TAGAAGATGGGGTGTTG---T-G--G-------AGA-AA-GCAGGGA 3310
Query 3504 CTGAAAATGGACGGCCGTCTAGTTCATCAGCGGCTAACAACTCAAGTTCGGATCAGATTC 3563
||||||| |||||||| |||||| | || | |||||| ||||| | || ||||||||||
Sbjct 3311 CTGAAAACGGACGGCCTTCTAGTGCGTCGGTGGCTAATAACTCTGGCTCAGATCAGATTC 3370
Query 3564 AAAGGTAA 3571
||||||||
Sbjct 3371 AAAGGTAA 3378
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 144047913805
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5