BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G16840.1
Length=2717
Score E
Sequences producing significant alignments: (Bits) Value
Ahg318448 jgi|Araly1|318448|fgenesh1_pm.C_scaffold_3001464 3542 0.0
> Ahg318448 jgi|Araly1|318448|fgenesh1_pm.C_scaffold_3001464
Length=2496
Score = 3542 bits (1918), Expect = 0.0
Identities = 2260/2427 (93%), Gaps = 16/2427 (1%)
Strand=Plus/Plus
Query 103 ATGGTTACAGGCGATAAAGAATCTTCCTTGATGAAGAAGAGGAACAAGAGAAGCCATAAG 162
|||||| |||||| || |||||||||||||||| ||||| |||||||||||||||||||
Sbjct 1 ATGGTTGCAGGCGGCAAGGAATCTTCCTTGATGATGAAGAAGAACAAGAGAAGCCATAAG 60
Query 163 AGAAAGCGAGAGGAGGATTTCGAACGTATAGATTCACTTCCTTGGAGCTCTTCTATACCC 222
|||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 61 AGAAAGCGTGAGGAGGATTTCGAACGTATAGATTCACTTCCGTGGAGCTCTTCAATACCT 120
Query 223 ATTGGAGAAGACGACGAAGGCGAATCCTTCTCCACTCTATTTTCAGGCTCAGGCCAGCTC 282
|| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 121 ATCGGAGAAGACGACGAAGGCGAAACCTTCTCCACTCTATTTTCAGGCTCAGGCCAGCTC 180
Query 283 GACGGAGGTTTTCTATCACTTGAGGAGATTGATGAAGCTGATTACCATCTAACTCTCCCT 342
|||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 181 GACGGAGGTTTTCTTTCACTTGAGGAGATTGATGAAGCTGATTACCATCTAGCTCTTCCT 240
Query 343 ACCATTGAAAGTGAAATAACAGAGAGAAAACAATCTCCAGAAGATGATGATGATACCAAC 402
|| |||||| || ||||||||||||||||||| ||| |||||| |||||||||||||||
Sbjct 241 ACGGTTGAAAATGGAATAACAGAGAGAAAACAAGCTCAAGAAGACGATGATGATACCAAC 300
Query 403 GAGACAGTggatgagatgattgaaggagaagaagctgaagaagatggagaaggaagggat 462
||||| || |||||||| ||| |||| |||| || ||||||||||||||| ||| ||
Sbjct 301 GAGACTGTTGATGAGATAATTCAAGGCGAAGGAGAAGAAGAAGATGGAGAA-GAA---AT 356
Query 463 gatgaggatgacgaagatgacgaggagaCTCGTaagaaaaaagagaagaaagctaagagg 522
| || | ||||| |||||| |||| |||||||| || |||||||||| |||||| |
Sbjct 357 G--GA--A-GACGAGGATGACTCTGAGAGTCGTAAGATAAGAGAGAAGAAAACTAAGAAG 411
Query 523 aataaggagaagaaaaaagagaagaagaagaagaagcagaagaagaTTAATGAGGCCGCA 582
||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||| | |
Sbjct 412 AATAAGGAGAAGAAAAAGGAGAAGAAGAAGAAGAAACAGAAGAAGATTAAGGAGGCTGAA 471
Query 583 AAGAATCAGGACGCTTC---TGCTGTTAGCTGTGATGGAGATGACACAGTAGAGGAGCAA 639
||| |||||||| |||| ||| ||||||||||||| |||| ||| |||||||||||||
Sbjct 472 AAGGATCAGGACACTTCTGATGCAGTTAGCTGTGATGAAGATTACAAAGTAGAGGAGCAA 531
Query 640 GTTGAGGAAGAAGAGATTCCTCCAGAATTTAGTGCATGGAGTTCGATGAGACTCCATCCA 699
||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 532 GTTGAGGGAGAAGAGATTCCTCCGGAATTTAGTGCATGGAGTTTGATGAGACTCCATCCA 591
Query 700 CTACTCATGAAGTCCATATACCGCC-TCGATTTCAAGGAGCCAACAAAAATCCAGAAGGC 758
|||||||||||||| ||||||| || | || |||||| |||| ||| |||| ||||||||
Sbjct 592 CTACTCATGAAGTCAATATACCACCTTGGA-TTCAAGCAGCCGACAGAAATTCAGAAGGC 650
Query 759 TTGTTTTAACGTTGCAGCATATCAGGGAAAGGATGTTATTGGTGCTGCAGAGACAGGATC 818
||||||| | ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 651 TTGTTTTTCCATTGCAGCATATCAGGGAAAGGATGTTATTGGTGCTGCGGAGACAGGATC 710
Query 819 TGGAAAGACACTTGCTTTTGGGTTGCCCATACTGCAACGCCTCTTAGACGAGCGGGAAAA 878
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 711 TGGAAAGACTCTTGCTTTTGGGTTGCCCATACTGCAACGCCTCTTAGACGAACGGGAAAA 770
Query 879 GGTTGGTAAATTGTATGCATTAAAGGGAGAAGAAGCACAGAAATATGCTGCAGATGGCTA 938
||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 771 GGTTGGTAAATTGTATGCATTGAAGGGAGAAAAAGCACAGAAATATGCTGCAGATGGCTA 830
Query 939 TTTACGAGCTCTAATCATCACTCCAACTAGGGAACTTGCTCTTCAGGTGACGGAGCATCT 998
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 831 TTTACGAGCTCTAATCATCACTCCAACTAGGGAACTTGCTCTTCAGGTGACGGATCATCT 890
Query 999 TGAGAATGCTGCCAAGAATCTTAGCGTCAAGGTCGTTCCTATTGTTGGTGGGATGTTTTC 1058
| ||||||||||||||||||| | |||||||||||||||||||||||||||||||| ||
Sbjct 891 TAAGAATGCTGCCAAGAATCTCAACGTCAAGGTCGTTCCTATTGTTGGTGGGATGTCATC 950
Query 1059 AGAGAAGCAGGAAAGACGTTTAAAAGAGAAACCTGAAATAGTTGTTGCAACTCCAGGAAG 1118
|| |||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||
Sbjct 951 AGCGAAGCAGGAAAGACTTTTAAAAGGGAAACCTGAAATAGTTGTTGGAACTCCAGGAAG 1010
Query 1119 GTTATGGGAACTTATGTCCGCTGGAGAAAAGCATCTTGTAGAGCTGCATTCCTTGTCGTT 1178
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1011 GTTGTGGGAACTTATGTCCGCTGGAGAAAAGCATCTTGTAGAGCTGCATTCCTTATCGTT 1070
Query 1179 CTTTGTGTTGGACGAGGCTGATCGCATGGTTGAAAGAGGTCATTTCAGGGAGCTGCAGTC 1238
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1071 CTTTGTGTTGGACGAGGCTGATCGCATGGTTGAAAGTGGTCATTTCAGGGAGCTGCAGTC 1130
Query 1239 TATACTCGACTTGCTTCCAGTGACAGATAAACCAAATGAAGGGAAAACGCAAACTGTGAA 1298
|||| | |||||||||||||||||||||| ||||||||||||||||| |||||||||| |
Sbjct 1131 TATAATTGACTTGCTTCCAGTGACAGATAGACCAAATGAAGGGAAAATGCAAACTGTGCA 1190
Query 1299 GAGTAATGACACAGTTTTAAACGTCCCGAAGAAGAAAAGACAAACTTTTGTTTTCTCAGC 1358
||||| ||||||||||| || | ||||||||||||||||||||||||||||||||||||
Sbjct 1191 GAGTAGTGACACAGTTTCCAATGCCCCGAAGAAGAAAAGACAAACTTTTGTTTTCTCAGC 1250
Query 1359 CACCATAGCGCTGTCTTCGGATTTCCGTAAAAAGCTAAAGCGTGGCTCCTCAAAGTCAAA 1418
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1251 TACCATAGCGCTGTCTTCGGATTTCCGTAAAAAGCTAAAGCGTGGCTCCTCGAAGTCAAA 1310
Query 1419 GCAATCATCATCTGGTGAAGTGAATTCTATTGAGGTTTTATCTGAACGAGCTGGAATGAG 1478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1311 GCAATCATCATCTGGTGAAGTGAATTCTATTGAGGTTTTATCTGAACGAGCTGGAATGAG 1370
Query 1479 AGATAATGTTGCCATCATTGATCTGACAACTACATCTATTTTGGCACCAAAGATTGAAGA 1538
||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1371 AGATAGTGTTGCCATCATTGATCTGACAACTGCATCTATTTTGGCACCAAAGATTGAAGA 1430
Query 1539 ATCTTTTATTAAGTGCGAAGAGAAGGAAAAAGACGCATACTTGTATTATATTTTGAGCGT 1598
|||||||||||||||||||||| |||||||||| || |||||||||||||||||||||||
Sbjct 1431 ATCTTTTATTAAGTGCGAAGAGGAGGAAAAAGATGCTTACTTGTATTATATTTTGAGCGT 1490
Query 1599 CCATGGACAAGGGCGGACAATTGTTTTCTGCACATCAGTGACTGATTTGCGGCATATCTC 1658
|||||||||||||||||||||||||||||| ||||||||| | | ||||||||||||||
Sbjct 1491 CCATGGACAAGGGCGGACAATTGTTTTCTGTACATCAGTGGCAGCTTTGCGGCATATCTG 1550
Query 1659 TGGGCTTTTAAAGATTCTTGGACTTGATGTTTGCACACTCTTCTCAGAAATGAAGCAGCG 1718
|| ||||||||||||||||||||| |||||||||| ||||| |||||| |||||||||||
Sbjct 1551 TGCGCTTTTAAAGATTCTTGGACTCGATGTTTGCAAACTCTACTCAGATATGAAGCAGCG 1610
Query 1719 AGCTCGGTTGAAGTCAATCGACCGTTTCCGTGCGAGCGAAAATGGAATACTCATAGCAAC 1778
||||||||||||| |||| |||||||||||||| ||||||||| | ||||||||||||||
Sbjct 1611 AGCTCGGTTGAAGGCAATTGACCGTTTCCGTGCAAGCGAAAATAGCATACTCATAGCAAC 1670
Query 1779 AGATCTTGTAGCAAGGGGTATTGATATTAAGAATGTCCGAACTATTATTCACTACAAACT 1838
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1671 AGATGTTGCAGCAAGGGGTATTGATATTAAGAATGTCCGAACTATTATTCACTACCAACT 1730
Query 1839 TCCACATTCGGCAGAAGTGTATGTACATAGATGTGGGAGGACTGCTAGAGCATTCGCAGA 1898
|||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 1731 TCCACATTCGGCAGAAGTATATGTACATAGAAGTGGGAGGACTGCTAGAGCATTCGCAGA 1790
Query 1899 TGGATGCAGTATAGCTTTGATTGAGCCAAATGAGACGTCCAAGTTTTACACGTTATGCAA 1958
||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||
Sbjct 1791 TGGATGCAGTATAGCTTTGATTGCGCCAAGTGATTCGTCCAAGTTTTACACGTTATGCAA 1850
Query 1959 GTCATTCTCTATGGAAAGCGTAAAGATATTCCCTTTGGATAACTCTTATATGCCAGCTGT 2018
||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1851 GTCATTCTCTAAGGAAACCGTAAAGATATTCCCTTTGGATAGCTCTTATATGCCAGCTGT 1910
Query 2019 GAGGAAGCGATTATATCTAGCACGTCAAATATATGAGATTGAGCGGAAAGGCTCGCGGGA 2078
|||||||||||||| |||||||||||||||| | |||||||||||||||||||||||||
Sbjct 1911 GAGGAAGCGATTATCTCTAGCACGTCAAATAGACCAGATTGAGCGGAAAGGCTCGCGGGA 1970
Query 2079 GAATGCAGACAGGACCTGGCTTAAAAAACATGCTGAATCAATGGAACTCGAATTGGACGA 2138
||| |||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||
Sbjct 1971 GAAAGCAGACAGGACCTGGCTTGAAAAGCATGCTGAATCGATGGAACTCGAATTGGACGA 2030
Query 2139 TGAAGAAAGTGAAGAGGAAAGAGTGGACAATGTCAGGCAGAGAAAAGCGACCTCAGCACG 2198
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2031 TGACGAAAGTGAAGAGGAAAGAGTGGACAATGTCAGGCAGAGAAAAGCGACCTCAGCACA 2090
Query 2199 ACTTAATAAGCTGAAGGAGGAACTTAGCACGCTCTTATCACATCCGATGCAGCCCAAGAA 2258
||||||||||||| |||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 2091 ACTTAATAAGCTGCAGGAGGAACTTAGCTCGCTCTTATCACGTCCGATGCAGCCCAAGAA 2150
Query 2259 ATTTTCAGGCCGTTACTTTGCTGGGGTTGGTGTGTCGACTCTTATGCAGAATCAGTTTGT 2318
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2151 ATTTTCAGGCCGTTACTTTGCTGGGGCTGGTGTGTCGACTCTTATGCAGAATCAGTTTAC 2210
Query 2319 AGAGTTAAAGAAGCAAAAACAAGC-ACAAATGCAAATTGGTGGAGATATAAAGAGAAGAA 2377
|||||||| ||| ||||||||| | ||||||||||| ||||||| | | |||||||||||
Sbjct 2211 AGAGTTAACGAAACAAAAACAA-CTACAAATGCAAACTGGTGGAAAGAAAAAGAGAAGAA 2269
Query 2378 AACTTGTTGTCATTAACCAGAACTGCATCGAACCTCTTCAAGCCCTTCGTGCTGGTGGTA 2437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2270 AACTTGTTGTCATTAACCAGAACTGCATCGAACCTCTTCAAGCCCTTCGTGCTGGTGGTA 2329
Query 2438 ACGAGATGCTGAAAATGAAAGGTCAGAGTGCAGAGAAGAGGCGCGATATAGCGAGCTTGA 2497
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2330 ACGAGATGATGAAAATGAAAGGTCAGAGTGCAGACAAGAGGCGCGATATAGCGAGCTTGA 2389
Query 2498 AAAAGAAAAGAAAGGAAGAGAAGATAG 2524
|||||||||||||||||||||||||
Sbjct 2390 GGAAGAAAAGAAAGGAAGAGAAGATAG 2416
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102500849295
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5