BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G16850.1
Length=1806
Score E
Sequences producing significant alignments: (Bits) Value
Ahg318449 jgi|Araly1|318449|fgenesh1_pm.C_scaffold_3001465 2036 0.0
> Ahg318449 jgi|Araly1|318449|fgenesh1_pm.C_scaffold_3001465
Length=1359
Score = 2036 bits (1102), Expect = 0.0
Identities = 1275/1359 (94%), Gaps = 9/1359 (1%)
Strand=Plus/Plus
Query 135 GTGGCATTGGTCTGGCTACTGGCATTCACTATTCTACTGATCAGTGGGGAAGGCAATAAT 194
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 7 GTGGCATTGGTCTGGCTACTGGCATTCACTATTCTACTGATCAGAGGGGAAGGCAATAAT 66
Query 195 GCCATCTGCAAGGAGAATTTT-AAGTTAGACCCTAGACCTCATAGTGTTTCGATCCTCGA 253
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 67 GCCATCTGCAAGGAG-ATTTTCAAGTTAGACCCTAGACCTCATAGTGTTTCGATCCTCGA 125
Query 254 GTTTGGAGCGGTTGGTGATGGGAAGACGCTCAACACTATTGCTTTCCAGAACGCTGTTTT 313
||||||||||||||| ||||||||||||||||||||| ||||||| |||||||| ||||
Sbjct 126 GTTTGGAGCGGTTGGAGATGGGAAGACGCTCAACACTCTTGCTTTTCAGAACGCCATTTT 185
Query 314 CTATCTCAAGTCTTTTGCGGATAAAGGCGGTGCTCAGCTTTATGTTCCACCAGGGAAATG 373
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 186 CTATCTCAAGTCCTTTGCGGATAAAGGCGGTGCTCAGCTTTATGTTCCACCAGGGAAATG 245
Query 374 GCTCACCGGAAGCTTCAATCTCACAAGCCATCTCACTCTCTTCTTGGAGAAAGGAGCAAC 433
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 246 GCTCACAGGAAGCTTCAATCTCACGAGCCATCTCACTCTCTTCTTGGAGAAAGGAGCAAC 305
Query 434 AATTCTTGCATCACCGGATCCGTCGCATTGGGACGTTGTCAGTCCTCTACCGTCCTATGG 493
|||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 306 AATTCTTGCATCACCGGATCCGTCGCATTGGGACATTGTCAGCCCTCTACCGTCCTATGG 365
Query 494 TCGCGGAATTGAACTTCCTGGAAAGCGGTACAGAAGTTTGATCAATGGAGACAATCTAAT 553
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 366 TCGCGGAATTGAACTTCCTGGAAAGCGGTACAGAAGTTTGATCAATGGAGACAATCTACT 425
Query 554 AGACGTAGTCATCACCGGTGAAAATGGGACATTTGACGGTCAAGGTGCGGCATGGTGGGA 613
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 426 AGACGTAGTCATCACCGGCGAAAATGGGACATTTGACGGTCAGGGTGCGGCATGGTGGGA 485
Query 614 GTGGCTTGAGTCCGGGTCCTTGAACTATAGCCGACCTCATATCATCGAATTCGTCTCCTC 673
|||||||||| | ||||||||||||||||| ||||||||||| |||||||||||||| ||
Sbjct 486 GTGGCTTGAGACGGGGTCCTTGAACTATAGTCGACCTCATATTATCGAATTCGTCTCATC 545
Query 674 TAAACACATCCTCATATCGAATCTAACCTTCTTAAACGCGCCCGCAATCAACATTCACCC 733
|| |||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||
Sbjct 546 CAAGCACATCCTCATATCAAATCTAACCTTCTTAAACGCACCCTCAATCAACATTCACCC 605
Query 734 TGTTTATTGCAGTCAGATTCATATCCGCAAAGTTTTGATCGAAACATCCGTTGATTCTCC 793
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 606 TGTTTATTGCAGTCAAATTCATATCCGCAAAGTTTTGATCGAAACATCCGTTGATTCTCC 665
Query 794 CCACGTTCTTGGAGTTGCCCCAGATTCTTCGGACAATGTTTGTATCGAGGACTCAACAAT 853
| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 666 TTATGTTCTTGGAGTTGCCCCAGATTCTTCCGACAATGTTTGTATTGAGGACTCAACAAT 725
Query 854 CAACGTTGGCCACGACGCGGTTTCTCTCAAGAGTGGTTGGGACCAATACGGTATACACTA 913
|| |||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 726 TAATGTTGGCCATGACGCGGTCTCTCTCAAGAGTGGTTGGGACCAATACGGCATACACTA 785
Query 914 CGGCCGTCCAACCACCGCTGTTCATATTCGGAATCTCAGATTAAAGTCTCCCACCGGTGC 973
||||||||||||||||| ||||||||| ||||||||||| |||||||||||||| |||||
Sbjct 786 CGGCCGTCCAACCACCGGTGTTCATATACGGAATCTCAGCTTAAAGTCTCCCACAGGTGC 845
Query 974 TGGAATCTCCTTCGGGAGCGAGATGTCAGGCGGAGTCTCGGATGTGACCGTTGAGCGTCT 1033
|||||||||||||| |||||||||||||||||| ||||||| |||||||| ||| ||||
Sbjct 846 CGGAATCTCCTTCGGTAGCGAGATGTCAGGCGGAATCTCGGACGTGACCGTAGAGAGTCT 905
Query 1034 TAACATACACAGCTCACTCATAGGTGTAGCCTTCAGAACCACCAGAGGCAGAGGAGGATA 1093
||||||||| ||||||| | |||| |||||||||||||||||||||||||||||||| ||
Sbjct 906 TAACATACAGAGCTCACACGTAGGCGTAGCCTTCAGAACCACCAGAGGCAGAGGAGGGTA 965
Query 1094 CATCCGTAATATCACAATCTCCGACGTCGATCTCACAAGCGTTGACACAGCCATAGTAGC 1153
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |
Sbjct 966 CATCCGTAATATCACAATCTCCGACGTCGATCTCACCAGCGTTGACACAGCCATCGTCGT 1025
Query 1154 CAACGGACACACCGGGTCACACCCGGATGATAAATTCGACCGGGACGCACTCCCAGTCGT 1213
||||||||||||||| || || || |||||||||||||||||||||||||||||||||||
Sbjct 1026 CAACGGACACACCGGATCGCATCCAGATGATAAATTCGACCGGGACGCACTCCCAGTCGT 1085
Query 1214 GACACACATTGTTATGCGGAATTTCACCGGAGTTGATATAGGAGTAGCCGGGAATCTCAC 1273
||||||||| || | ||||||||||||||||| ||||||||| | ||||||||||||||
Sbjct 1086 GACACACATCGTCCTACGGAATTTCACCGGAGTGGATATAGGATTGGCCGGGAATCTCAC 1145
Query 1274 CGGGATCGGAGAATCTCCCTTCACGTCGATATGCCTCGCGGATATTCATTTACAAACGCG 1333
||| |||||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 1146 CGGAATCGGAGAATCTCCCTTCACATCGATATGCCTCACGGATATTCATTTACAAACGC- 1204
Query 1334 AT-CAGAAGAATCTTGGATATGCTCCAACGTCTCTGGTTTCTCAGACGACGTATCACCGG 1392
|| |||| |||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1205 ATTCAGAT---TCTTGGATATGCTCCAACGTCTCTGGTTTCTCAGACGACGTATCGCCCG 1261
Query 1393 AGCCTTGTCAAGAACTCATGAGTTCTCCTTCGTCTTGCTTCGCCGGTGGTAGCATATACG 1452
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 1262 AGCCTTGTCAAGAACTCATGAGTTCTCCGTCGTCGTGCTTCGCCGGTGGTAGCATATACG 1321
Query 1453 AG-GGTGATGCGACGGCTCAGTCGTATTACAGTTGGTAA 1490
| ||||||||| ||||||||||||| ||||||||||||
Sbjct 1322 -GCGGTGATGCGGCGGCTCAGTCGTACTACAGTTGGTAA 1359
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67800636100
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5