BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G16857.2
Length=2669
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479152 jgi|Araly1|479152|fgenesh2_kg.3__1853__AT3G16857.2 3635 0.0
Ahg946673 jgi|Araly1|946673|scaffold_702902.1 435 1e-120
Ahg926035 jgi|Araly1|926035|scaffold_201596.1 124 3e-27
> Ahg479152 jgi|Araly1|479152|fgenesh2_kg.3__1853__AT3G16857.2
Length=2519
Score = 3635 bits (1968), Expect = 0.0
Identities = 2392/2585 (93%), Gaps = 75/2585 (3%)
Strand=Plus/Plus
Query 2 AGAGAGCTTTACTCTGTGAATAAATaaaaaaaCAGAGAAAAAGAGCTCTAAGGTGAGACA 61
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1 AGAGAGCTTTACTCTGTG----AATAAAAAAACAGAGAAAAAGAGCTCTAAGGTGAGACA 56
Query 62 AGCCTTGTCTTCTTCAACTCCCTAAGTCTCATCTCACCATCTCTCTCTTCT-TCtttttt 120
|||| |||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 57 AGCCATGTCTTCTTCAACTCCCTAAGTCTCATCTCACCATCTCTCTCTTCTCTTTTTTTT 116
Query 121 ttGGTTACCCAGAAGAGATTCACTTCTATCTCCAACAATTTCGTATTCTCTCATAATATT 180
|||||||||| ||| | || | | || ||| || |||| | || |||
Sbjct 117 TTGGTTACCC-----AGA---A-----AT-T-C-AC---TTC-TA-TCTC-C--AA-ATT 151
Query 181 CAATTTTAAATCGAATAAAACTCGCGTCAAtttcccctctttctttctgggtatatattc 240
|||||||||||||||||||| ||||||| ||||| ||||||| |||||||||||||||||
Sbjct 152 CAATTTTAAATCGAATAAAAATCGCGTCCATTTCGCCTCTTTATTTCTGGGTATATATTC 211
Query 241 ttttctgcttttc---tttttttgtttcttGGGTTCGAGCTACATAGAGAGAGGTATGAT 297
||| |||||||| |||||||| |||||||||||||| || ||||||| ||||||
Sbjct 212 -TTT-TGCTTTTCTTTTTTTTTTGGTTCTTGGGTTCGAG---CA-AGAGAGA--TATGAT 263
Query 298 GAATCCGAGTCACGGAAGAGGACTCGGATCGGCTGGTGGGTCCAGCTCCGGTAGAAATCA 357
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 264 GAATCCGAGTCACGGAAGAGGACTCGGATCGGCTGGTGGGTCTAGCTCCGGTAGAAATC- 322
Query 358 AGGAGGTGGTGGTGAGACCGTCGTCGAGATGTTTCCTTCTGGTCTTCGAGTTCTTGTCGT 417
| ||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 323 A--AGGCGGTGGTGAGATCGTAGTCGAGATGTTTCCTTCTGGTCTTCGAGTTCTTGTCGT 380
Query 418 TGACGATGACCCAACTTGTCTCATGATCTTAGAGAGGATGCTTAGGACTTGTCTTTACGA 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 381 TGACGATGACCCAACTTGTCTCATGATCTTAGAGAGGATGCTTAGGACTTGTCTTTACGA 440
Query 478 AGTAACGAAATGCAACAGAGCAGAGATGGCATTGTCTCTGCTCCGGAAGAACAAACATGG 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 441 AGTAACGAAATGCAACAGAGCAGAGATGGCATTGTCTCTGCTCCGGAAGAACAAACATGG 500
Query 538 ATTCGATATAGTAATCAGTGATGTTCATATGCCTGACATGGACGGTTTCAAGCTTCTTGA 597
||| ||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 501 ATTTGATATTGTAATCAGTGATGTTCATATGCCTGACATGGACGGCTTCAAGCTCCTTGA 560
Query 598 GCATGTTGGTCTAGAGATGGACTTACCTGTTATCATGATGTCTGCGGATGATTCAAAGAG 657
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 561 ACATGTTGGTCTAGAGATGGACTTACCTGTTATCATGATGTCTGCGGATGATTCGAAGAG 620
Query 658 TGTGGTTCTAAAGGGAGTAACGCACGGTGCGGTTGATTACCTTATCAAGCCTGTACGTAT 717
||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 621 TGTTGTTCTAAAGGGAGTGACGCACGGTGCGGTTGATTACCTTATCAAGCCGGTACGTAT 680
Query 718 GGAGGCACTTAAGAACATATGGCAGCATGTAGTTAGGAAGAGGAGAAGTGAATGGAGTGT 777
|||||||||||||||||||||||||||||| ||| |||||||||| ||||| ||||| ||
Sbjct 681 GGAGGCACTTAAGAACATATGGCAGCATGTGGTTCGGAAGAGGAGGAGTGAGTGGAGCGT 740
Query 778 ACCGGAACATTCTGGGAGCATTGAGGAGACTGGCGAGAGACAGCAGCAGCAACATAGAGG 837
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 741 ACCGGAACATTCTGGGAGCATTGAGGAGACCGGCGAGAGACAGCAGCAGCAACATAGAGG 800
Query 838 AGGTGGTGGTGGTGCAGCTGTTTCTGGTGGAGAGGATGCGGTGGATGATAACTCATCCTC 897
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 801 AGGTGGTGGTGGTGCAGCTGTTTCTGGTGGCGAGGATGCGGTGGATGATAACTCTTCCTC 860
Query 898 GGTTAACGAAGGTAACAATTGGAGGAGCAGTTCACGGAAGAGGAAAGACGAGGAAGGAGA 957
|||||||||||| ||||| ||||||||||| ||||||||| |||||||||||||||||||
Sbjct 861 GGTTAACGAAGGGAACAACTGGAGGAGCAGCTCACGGAAGCGGAAAGACGAGGAAGGAGA 920
Query 958 AGAGCAAGGAGATGATAAGGACGAAGATGCGTCGAATTTGAAGAAACCGCGTGTCGTCTG 1017
||||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 921 AGAGCAAGGGGATGATAAGGACGAAGATGCGTCGAATTTGAAGAAACCGCGTGTTGTTTG 980
Query 1018 GTCTGTTGAATTGCATCAGCAGTTTGTTGCTGCTGTTAATCAGCTCGGCGTTGAGAAGGC 1077
||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||
Sbjct 981 GTCTGTTGAATTGCATCAGCAGTTTGTTGCTGCTGTTAATCAGCTTGGCGC--AGA-GGC 1037
Query 1078 GGTTCCTAAAAAGATCTTAGAGCTGATGAATGTTCCTGGTCTAACCCGAGAAAACGTAGC 1137
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1038 GGTTCCTAAGAAGATCTTAGAGCTGATGAATGTTCCTGGGCTAACCCGAGAAAACGTAGC 1097
Query 1138 AAGTCACCTCCAGAAATACCGGATATATCTAAGACGGCTTGGAGGG-GTATCGCAGCACC 1196
||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||
Sbjct 1098 CAGTCACCTCCAGAAATACCGGATATATCTAAGACGGCTTGG-GGGAGTATCTCAGCACC 1156
Query 1197 AAGGCAATCTTAACAACTCGTTTATGACGGGTCAGGATGCGAGCTTCGGACCTCTTTCGA 1256
|||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 1157 AAGGCAATCTAAACAACTCGTTTATGACGGGTCAAGATGCAAGCTTCGGACCTCTTTCGA 1216
Query 1257 CATTGAATGGGTTTGATCTTCAAGCACTAGCCGTCACAGGTCAGTTACCTGCACAGAGTC 1316
| ||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||| |
Sbjct 1217 CGTTGAATGGGTTTGATCTTCAAGCGCTAGCCGTCACAGGTCAGCTACCTGCTCAGAGCC 1276
Query 1317 TTGCACAGCTTCAAGCCGCTGGTTTAGGCCGGCCTGCGATGGTCTCTAAGTCAGGTTTGC 1376
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1277 TTGCACAGCTTCAAGCTGCTGGTTTAGGCCGGCCTGCGATGGTCTCTAAGTCAGGTTTGC 1336
Query 1377 CGGTTTCCTCCATTGTGGATGAGAGAAGCATCTTCAGCTTTGACAACACGAAAACAAGAT 1436
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1337 CGGTTTCCTCCATTGTGGACGAGAGAAGCATCTTCAGCTTTGACAACACGAAAACAAGAT 1396
Query 1437 TTGGAGAAGGGCTTGGGCATCACGGGCAACAACCCCAACAGCAACCACAGATGAACTTAC 1496
| ||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1397 TCGGAGAGGGGCTTGGTCATCACGGGCAACAACCCCAACAGCAACCGCAGATGAACTTAC 1456
Query 1497 TTCACGGTGTCCCCACGGGTTTACAACAGCAGCTTCCTATGGGTAATCGAATGAGTATTC 1556
||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1457 TTCACGGTGTCCCGACAGGTTTACAACAACAGCTTCCTATGGGTAATCGAATGAGTATTC 1516
Query 1557 AACAACAGATTGCTGCTGTTCGAGCTGGAAATAGTGTTCAAAACAACGGAATGCTGATGC 1616
|||||||||| || ||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 1517 AACAACAGATCGCCGCTGTTCGAGCCGGACATAGTGTTCAAAACAACGGAATGCTGATGC 1576
Query 1617 CTCTAGCGGGTCAGCAGTCTTTGCCTCGGGGACCACCGCCTATGCTAACCTCTTCGCAAT 1676
|||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 1577 CTCTAGCGGGTCAGCAATCTTTGCCTCGGGGACCACCGCCAATGCTAACCTCGTCGCAAT 1636
Query 1677 CATCCATCAGGCAGCCGATGTTATCAAACCGCATTTCCGAGAGAAGTGGTTTCTCTGGAA 1736
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 1637 CATCCATCAGGCAGCCGATGTTATCAAACCGTATTTCCGAGAGAAGCGGTTTCTCTGGAA 1696
Query 1737 GGAACAATATCCCCGAGAGCAGCAGAGTGTTACCGACAAGTTACACTAATCTCACAACAC 1796
|||||||||| |||||||||||| |||||||||||||| ||||||| || ||||||||||
Sbjct 1697 GGAACAATATTCCCGAGAGCAGCCGAGTGTTACCGACAGGTTACACCAACCTCACAACAC 1756
Query 1797 AACACTCATCAAGCTCGATG-CCTTATAACAACTTCCAACCAGAACTTCCC-GTGAACAG 1854
|||||||||||||| ||||| ||| ||||||||| |||||||||||| ||| ||||||||
Sbjct 1757 AACACTCATCAAGCGCGATGGCCT-ATAACAACTACCAACCAGAACT-CCCTGTGAACAG 1814
Query 1855 TTTCCCGCTGGCAAGTGCACCAGGGATATCAGTACCGGTTCGGAAAGCCACTTCTTACCA 1914
||||||||| |||||||||||||| ||||||| ||||| |||||||||||||||||||
Sbjct 1815 TTTCCCGCTAGCAAGTGCACCAGGCTTATCAGTTCCGGTAAGGAAAGCCACTTCTTACCA 1874
Query 1915 GGAAGAGGTTAACAGCTCCGAAGCGGGTTTCACTACGCCGAGCTACGACATGTTCACCAC 1974
||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1875 GGAAGAGGTTAACAGTTCCGAAGCGGGTTTCACCACCCCGAGCTACGACATGTTCACCAC 1934
Query 1975 CAGACAGAATGATTGGGATCTGAGGAATATTGGAATAGCCTTTGACTCACATCAGGACTC 2034
||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1935 CAGACAGAACGATTGGGATCTGCGGAATATTGGAATAGCCTTTGACTCACATCAGGACGC 1994
Query 2035 AGAATCCGCTGCGTTTTCCGCTTCAGAAGCCTACTCTTCTTCGTCCATGTCAAGACACAA 2094
||||||||||| |||||||||||||||||| ||||||||||| || ||||||||| ||||
Sbjct 1995 AGAATCCGCTGTGTTTTCCGCTTCAGAAGCTTACTCTTCTTCATCAATGTCAAGAAACAA 2054
Query 2095 CACGACAGTTGCAGCCACCGAGCATGGCCGAAACCACCAGCAGCCACCATCG-GGAATGG 2153
|||||||||||||||||| ||||||||||| ||||||||||||||||| || |||||||
Sbjct 2055 CACGACAGTTGCAGCCACAGAGCATGGCCGGAACCACCAGCAGCCACC-TCCAGGAATGG 2113
Query 2154 TACAGCACCATCAGGTTTATGCAGACGGAAACGGTGGTTCAGTGAGGGTGAAATCAGAGA 2213
| | ||||||||||| ||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 2114 TCCCGCACCATCAGGGTTATGCAGATGGAAACAGTGGTTCAGTGAGGGTGAAATCAGAGA 2173
Query 2214 GAGTGGCTACGGATACAGCAACAATGGCGTTTCACGAGCAGTATAGTAATCAAGAAGATC 2273
|||||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2174 GAGTGGCTGCAGATACAGCAGCAATGGCGTTTCACGAGCAGTATAGTAATCAAGAAGATC 2233
Query 2274 TTATGAGCGCACTTCTTAAGCAGGAAGGGATTGCACCGGTTGATGGCGAATTCGACTTTG 2333
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2234 TTATGAGCGCACTTCTTAAGCAGGAAGGGATTGCACCGGTTGATGGAGAATTCGACTTTG 2293
Query 2334 ACGCATACTCCATCGATAACATTCCGGTTTGATTGGATaaaaaaaCCGATAAACCGGAGG 2393
|||||||||| |||||||| |||||||||||||||||||||||| ||||||||| |||||
Sbjct 2294 ACGCATACTCGATCGATAATATTCCGGTTTGATTGGATAAAAAA-CCGATAAACTGGAGG 2352
Query 2394 GACTACCCGGATCTGTACTGTATCATTTTTACACGACGATCTACTAAAACTTGTTT-GAT 2452
||||| | |||| |||| ||||||||||| ||||||||||||||| ||| |||||| |||
Sbjct 2353 GACTATCGGGATTTGTATTGTATCATTTT-ACACGACGATCTACTTAAATTTGTTTTGAT 2411
Query 2453 ATATATGTAGTCTGCATGAAATTTTAAATGGCAGATTATATAAGAAATAATTATTCATGT 2512
|||| | |||||||||||||||||||||||||||||||||| | | | | |
Sbjct 2412 ATATGTATAGTCTGCATGAAATTTTAAATGGCAGATTATAT--G---T--T-A-----G- 2457
Query 2513 TAGGGGTTAATATCCTTGGAGATTCTTTTGTTCCTCATTTATGTAGTGAGGCTGTTTAGG 2572
||| ||| | |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2458 --GGG-TTAGTTTCCTTGGAGATTCTTTTGTTCCTCATCTATGTAGTGAGGCTGTTTAGG 2514
Query 2573 GTTTT 2577
| |||
Sbjct 2515 GGTTT 2519
> Ahg946673 jgi|Araly1|946673|scaffold_702902.1
Length=2073
Score = 435 bits (235), Expect = 1e-120
Identities = 386/456 (85%), Gaps = 22/456 (5%)
Strand=Plus/Plus
Query 400 TCTTCGAGTTCTTGTCGTTGACGATGACCCAACTTGTCTCATGATCTTAGAGAGGATGCT 459
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 103 TCTTCGAGTTCTTGTCGTTGATGATGATCCAACTTGTCTCATGATCTTAGAGAGGATGCT 162
Query 460 TAGGACTTGTCTTTAC-GAAGTAACGAAATGCAACAGAGCAGAGATGGCATTGTCTCTGC 518
|| ||||||||||||| || ||||| ||||| |||||||||||||| |||||||||||||
Sbjct 163 TATGACTTGTCTTTACAGA-GTAACTAAATGTAACAGAGCAGAGATCGCATTGTCTCTGC 221
Query 519 TCCGGAAGAACAA-ACATGGATTCGATATAGTAATCAGTGATGTTCATATGCCTGACATG 577
| || |||||||| | |||| || ||||| || |||||||||||||||||||||||||||
Sbjct 222 TTCGAAAGAACAAGA-ATGGTTTTGATATTGTCATCAGTGATGTTCATATGCCTGACATG 280
Query 578 GACGGTTTCAAGCTTCTTGAGCATGTTGGTCTAGAGATGGACTTACCTGTTATCATGATG 637
|| || ||||||||||| || || |||||| |||||||||| ||||||||||||||||||
Sbjct 281 GATGGCTTCAAGCTTCTCGAACACGTTGGTTTAGAGATGGATTTACCTGTTATCATGATG 340
Query 638 TCTGCGGATGATTCAAAGAGTGT-G-GTTCTAAAGGGAGTAACGCACGGTGCGGTTGATT 695
|||||||||||||| ||||| || | ||| ||||| ||| || |||||||| |||||||
Sbjct 341 TCTGCGGATGATTCGAAGAGCGTTGTGTTG-AAAGG-AGTGACTCACGGTGCAGTTGATT 398
Query 696 ACCTTATCAAGCCTGTACGTATGGAGGCACTT-AAGAACATATGGCAGCATGTAGTTAGG 754
|||| ||||| || |||||||| ||||| || ||||| |||||||| ||||| || ||
Sbjct 399 ACCTCATCAAACCGGTACGTATTGAGGCT-TTGAAGAATATATGGCAACATGTGGTGCGG 457
Query 755 AAGAGGAG-AAGTGAATGGAGTGTACCGGAACATTCTGG-G-A-GCATTGAGGAGACTGG 810
|||| | | || || |||| ||| ||||||||||||| | | | ||||| || |||||
Sbjct 458 AAGAAGCGGAAC-GAGTGGAATGTTTCGGAACATTCTGGAGGAAGTATTGAAGATACTGG 516
Query 811 CGA-GA--G--ACAG-CAGCAGCAACATAGAGGAGG 840
|| || | |||| |||||||| || || |||||
Sbjct 517 CGGCGATAGGGACAGGCAGCAGCAGCAGAG-GGAGG 551
> Ahg926035 jgi|Araly1|926035|scaffold_201596.1
Length=1633
Score = 124 bits (67), Expect = 3e-27
Identities = 189/247 (77%), Gaps = 12/247 (5%)
Strand=Plus/Plus
Query 407 GTTCTTGTCGTTGACGATGACCCAACTTGTCTCATGA-TCTTAGAGAGGATGCTTAGGAC 465
|||||||| || || |||||||||||||| |||| || || | |||| ||||| | ||
Sbjct 58 GTTCTTGTGGTGGATGATGACCCAACTTGGCTCAAGATTC-TCGAGAAAATGCTCAAGAA 116
Query 466 TTGTCT-TTACGAAGTAACGAAATGCAACAGAGC-AGAGATGGCAT-TG-TCTCTGCTCC 521
|| || |||||||||||||| || ||| ||||| ||| | || | ||||
Sbjct 117 GTG-CTCTTACGAAGTAACGACCTGTGGGTTAGCTAGAGA-GGC-TCTGAGGT-TGCTGA 172
Query 522 GGAAGAACAAACATGGATTCGATATAGTAATCAGTGATGTTCATATGCCTGACATGGACG 581
|| || ||| | |||| |||||| || ||||| ||||| | |||||||||||||| |
Sbjct 173 GGGAGCGTAAAGACGGATACGATATCGTGATCAGCGATGTGAACATGCCTGACATGGATG 232
Query 582 GTTTCAAGCTTCTTGAGCATGTTGGTCTAGAGATG-GACTTACCTGTTATCATGATGTCT 640
|||||||||||||||||||||||||||| || || ||| | ||||| || ||||||||
Sbjct 233 GTTTCAAGCTTCTTGAGCATGTTGGTCTTGA-ATTAGACCTCCCTGTAATAATGATGTCG 291
Query 641 GCGGATG 647
| |||||
Sbjct 292 GTGGATG 298
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100672517535
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5