BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G16860.1
Length=2361
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929526 jgi|Araly1|929526|scaffold_301983.1 2833 0.0
> Ahg929526 jgi|Araly1|929526|scaffold_301983.1
Length=2003
Score = 2833 bits (1534), Expect = 0.0
Identities = 1850/2005 (92%), Gaps = 12/2005 (1%)
Strand=Plus/Plus
Query 114 AAGAGATTTAGAGTAATCATGGGTTTAACTCGAAATTTCATTTTATGGATTCTTTTGTCA 173
||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |
Sbjct 4 AAGAGATTTAGAGTAATCATGGGTTTAACTCCAAATTTCATTTCATGGATTCTTTTGTTA 63
Query 174 TCTCTCTTCACGGCGATTCAACTAACGTCGTCTCAACGCAACACTCCACCACCACGCTCT 233
||| |||||||||||||||||||||| |||| ||| | |||| |||| ||||||||||||
Sbjct 64 TCTATCTTCACGGCGATTCAACTAACATCGTGTCAGCCCAACGCTCCTCCACCACGCTCT 123
Query 234 AAAGACGCCGATCTCTGCAACGGCGTGTTCGTTTCCTACACTTACTTAACCGGTACCAAG 293
|||| | |||||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct 124 CCAGACTCTGATCTCTGCAACGGCGTGTTTGTTTCCTACACTTACTCAACCGGTACCAAG 183
Query 294 ATTAAACCAAACGACACGAAGAACCAGCCGTACCGGTTCGAATCAGAGATCACGGTCCTA 353
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 184 ATTAAACCGAACGACACGAAGAACCAGCCGTACCGGTTCGAATCAGAGATCACGGTGCTC 243
Query 354 AACAACGGCCGCGACGAGCTTAAATCGTGGCAAGTCTTTGTTAAATTCGCCCACCGCGAG 413
||||||||||||||||||||||||||||||| ||||| ||| |||||||||||| |||
Sbjct 244 AACAACGGCCGCGACGAGCTTAAATCGTGGCGTGTCTTCGTTGGATTCGCCCACCGTGAG 303
Query 414 ATTCTTGTTTCAGCGACCAACGCTGTTCTCTCTGACGGTTCTAGCCTCCCGGCTAGCGTT 473
|||||||||||||| ||||||||||||||||| || |||||||||||||||| ||||||
Sbjct 304 ATTCTTGTTTCAGCCACCAACGCTGTTCTCTCCGATGGTTCTAGCCTCCCGGTTAGCGTC 363
Query 474 GAGAACGGGACAATCTTCGCCGGGTTTCCATCGGCGGATTTGAAGACGGCGATCATGACG 533
||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||
Sbjct 364 GAGAACGGGACAATCTTCGCCGGGTTTCCATCGGCTGATTTGAAGTCGGCGATTATGACG 423
Query 534 GCCGGCGACGTAACTCAGATGGAAGCACGTGTTGAGCTCGTGGGTACTCAGTTTGGAGTT 593
|| || ||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 424 GCGGGTGACGTCACTCAGATGCAAGCACGTGTTAAGCTCGTGGGTACTCAGTTTGGAGTT 483
Query 594 GCTCCGCCGAGTGTTCCGCTTCCGAAGAACATCACTCTTGTTAATGATGGATGGTCTTGT 653
|| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 484 GCGCCGCCGAATGTTCCGCTTCCGAAGAACATCACTCTTGTTAATGATGGATGGTCTTGT 543
Query 654 CCTAAACCCACTCAACAAGGTAGTAATGTTCTGCAAGTATGTTGCACACCGAATCCGAAC 713
|||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 544 CCTAAACCCACTCAGCAAGGTAGGAATGTTCTGCAAGTATGTTGCACGCCGAATCCGAAC 603
Query 714 ATTACAACAAGCAAAATTGGTCAAAAGTTCCTTCCTAGGCAAGAAGGAGATCTAACCATA 773
|| |||||| ||||||||||| ||| |||||||||||||||||| |||||||||||||||
Sbjct 604 ATAACAACAGGCAAAATTGGTGAAATGTTCCTTCCTAGGCAAGAGGGAGATCTAACCATA 663
Query 774 ATGTACGATGTGACCAGAGCATATCAGTCGAGTTACTCAGCGCAGGTCACTATCGAGAAT 833
|||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||
Sbjct 664 ATGTACGATGTGACCAAAGCATATCAGTCGAATTACTTGGCGCAGGTCACTATCGAGAAT 723
Query 834 CATAACCTGCTTGGTCGGCTTGACAATTGGGATCTAAGTTTTATGTGGATGAAAGATGAG 893
|||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 724 CATAACTTGCTTGGTCGGCTTGACAATTGGAATCTAAGTTTTTTGTGGATGAAAGATGAG 783
Query 894 TTTCTCTTCTCAACCAAAGGAGCTTATCCAAGTGTTGTCGATTCGTCGGATTGCATCACT 953
||| ||||| ||||||||||||||||||| |||||||||||||| || |||||||||| |
Sbjct 784 TTTATCTTCACAACCAAAGGAGCTTATCCGAGTGTTGTCGATTCATCAGATTGCATCAAT 843
Query 954 GGTCCTCAAGCAAAATACTATAAAGATCTTGACTTCTCTAATGTCATGAGCTGTGCAAGA 1013
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 844 GGTCCTCAAGCAAAATACTATAAAGATCTTGACTTCTCTCATGTCTTGAGCTGTGCAAGA 903
Query 1014 AGGCCACACATCATAGACCTACCC-CTGACTAAGTATAACGATACCAATGTCGGGCGTAT 1072
|||||||||||||||||||| ||| || |||||||||||||||||| || ||||||||||
Sbjct 904 AGGCCACACATCATAGACCT-CCCTCTTACTAAGTATAACGATACCGATTTCGGGCGTAT 962
Query 1073 CCCATACTGCTGCAGAAATGGAACTATTCTGCCACGGTCCATGGATCCAGAGAAGTCTAA 1132
|||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||| ||
Sbjct 963 CCCATATTGCTGCAGAAACGGAACGATTCTGCCACGGTCCATGGATCCAGAGAAGTCAAA 1022
Query 1133 ATCGGTTTTTCAAATAGAAGTTTACAAAATGCCTCCTGATCTCAACATCTCCT-CTATAA 1191
||| || ||||||||| ||||||||||||||||||| ||||||||||| || | | ||||
Sbjct 1023 ATCAGTCTTTCAAATACAAGTTTACAAAATGCCTCCAGATCTCAACATGTC-TGCCATAA 1081
Query 1192 CACCTCCCCAGAGCTGGCAGATTAAAGGTAACCTTAACCCGGATTACAAATGTGGCCCTC 1251
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 1082 CACCTCCCCAGAGCTGGCAGATTAAAGGGAACCTTAACCCGGATTACAAATGTGGTCCTC 1141
Query 1252 CTCTTCGTGTCAGCTCAAGCCAGTTCCCTGATACAAGCGGTTTGCCTTCAAACAAGAGTG 1311
|| |||| |||||||| ||||||||||||||| |||||||||| || |||||| |||||
Sbjct 1142 CTGTTCGAGTCAGCTCGAGCCAGTTCCCTGATCCAAGCGGTTTACCCTCAAACCGGAGTG 1201
Query 1312 CATTTGCTAGCTGGCAAGTCGTCTGCAACATCACTCAACCAACTCCTCCTAAATGCTGCG 1371
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
Sbjct 1202 CATTTGCTAGCTGGCAAGTCGTCTGCAACATCACTCAACCAGTTACTCCTAAATGCTGTG 1261
Query 1372 TCTCATTCTCTTCTTATTTCAATGACTCAGTAATCCCGTGTAAGACCTGCGCTTGTGGAG 1431
|||||||||||||||| |||||||| ||| ||||||| ||||||||||||||||||||||
Sbjct 1262 TCTCATTCTCTTCTTACTTCAATGATTCAATAATCCCCTGTAAGACCTGCGCTTGTGGAG 1321
Query 1432 GTTGCTCTAGCGACAGAGTGGCGCGTACTTGCAGCACAACTTCTCCAGCTCTTCCTCTTC 1491
||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 1322 GTTGCACTAGCGACAGAGTTGCGCGTACTTGCAGCACAACTTCTCCAGCTCTTCTTCTTC 1381
Query 1492 CATATCAGGCTCTTCTAATTCCATTTGACAACCGAACCAAACTTACCAACGCTTGGGCAG 1551
||| |||||||||||| ||||| ||||| ||||||||||||||||| | |||||||||||
Sbjct 1382 CATCTCAGGCTCTTCTTATTCCGTTTGAGAACCGAACCAAACTTACTACCGCTTGGGCAG 1441
Query 1552 TGTTAAAAAACCGGAAAGTCCCGGACCCATTACCTTGTGGAGATAACTGTGGAGTCAGCA 1611
||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 1442 AGTTAAAACACCGGAAAGTCCCGGACCCATTGCCTTGTGGAGATAACTGTGGAGTCAGTA 1501
Query 1612 TAAACTGGCACCTAGCTACAGACTATCGAGGCGGATGGACTGCTCG-AGTCACACTCTTC 1670
|||||||||| ||||| || |||||||||||||||||||||||||| | |||||||||||
Sbjct 1502 TAAACTGGCATCTAGCCACGGACTATCGAGGCGGATGGACTGCTCGGA-TCACACTCTTC 1560
Query 1671 AACTGGGGTGATACTGATTTCGTGGATTGGTTTACCGCGGTTGAACTGAGAAATGCTGCA 1730
|| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1561 AATTGGGGTGAAACTGACTTCGTGGATTGGTTTACCGCGGTTGAACTGAGAAATGCTGCA 1620
Query 1731 CCCGGTTTTCAGAAAGCGTACTCGTTTAACGGAAGTATCATCGCGGTCAACGGGAAGAAC 1790
|||||||| |||||||||||||||||||||||| || |||||| ||||||| ||||||
Sbjct 1621 TCCGGTTTTGAGAAAGCGTACTCGTTTAACGGAACTACCATCGCTATCAACGGAAAGAAC 1680
Query 1791 ACAACTGTTTTAATGGAAGGGCTCCCTGGACTGAACTATCTCCTTGCAGAGAAAGACGGA 1850
|| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1681 ACCACTGTTTTAATGGAAGGGCTCCCTGGACTGAACTATCTCCTTGCAGAGAGAGACGGA 1740
Query 1851 AAAAACCCGAGTGAAG-ACTTTCGGATACCCGGGAAACAGCAGTCGGTTATCTCCTTCAC 1909
|||| ||||||| ||| |||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 1741 AAAACCCCGAGT-AAGGACTTTCGGTTACCCGGGAAACAGCAGTCAGTTATCTCCTTCAC 1799
Query 1910 CAAGAAACTGACTCCTGGAATCAAAGTTGGTTCCAAAGATGGGTTTCCCACCAAAGTACT 1969
||||||||| ||||||||| ||||||||||||||| |||||||||||| ||||||||| |
Sbjct 1800 CAAGAAACTAACTCCTGGACTCAAAGTTGGTTCCAGAGATGGGTTTCCGACCAAAGTATT 1859
Query 1970 CTTCAACGGCCAGGAATGTTCACTCCCTTCTGTACTACCCACGAGCAACAGTCACAGGAA 2029
||||||||||| |||||||||||||||||||||||||| |||| |||| |||||| |||
Sbjct 1860 ATTCAACGGCCAAGAATGTTCACTCCCTTCTGTACTACCAACGAACAACGGTCACAAGAA 1919
Query 2030 ACATGTATCCACCTTTCTTCTCATC-CTGACACCATTTTTGGCTCTACTGTTTCTTCGGA 2088
||||||||| || ||||||||||| | ||| ||||||||||||||||||||||| ||||
Sbjct 1920 ACATGTATCGACTTTTCTTCTCATGGC-GACTCCATTTTTGGCTCTACTGTTTCTGCGGA 1978
Query 2089 TTTAAAAGTTCCAGTGAAGGA-CTT 2112
||||| |||||| |||| ||| |||
Sbjct 1979 TTTAAGAGTTCCGGTGA-GGAGCTT 2002
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88940722075
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5