BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G16870.1
Length=817
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479155 jgi|Araly1|479155|fgenesh2_kg.3__1856__AT3G16870.1 527 5e-149
> Ahg479155 jgi|Araly1|479155|fgenesh2_kg.3__1856__AT3G16870.1
Length=716
Score = 527 bits (285), Expect = 5e-149
Identities = 384/428 (90%), Gaps = 22/428 (5%)
Strand=Plus/Plus
Query 18 tctctctcCCTCTTCCTTATCATC-A-AAACTTGCTCTGCTCCGATCTCTTaaaaaaaaa 75
|||||||| ||||||||||||||| | |||||||||||||||||| || |
Sbjct 1 TCTCTCTCTCTCTTCCTTATCATCAACAAACTTGCTCTGCTCCGA--TC----------A 48
Query 76 aaGATGTCTGAGGGATCAGAAGATACGAAAACAAAACTCGACTCTGCCGGAGAGTTATCA 135
||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 49 AAGATGTCTGAGGGATCAGAAGAAACGAAAACAAAGGTCGACTCTGCCGGAGAGTTATCA 108
Query 136 GATGTTGATAACGAGAACTGCAGTAGCAGCGGAAGTGGCGGTGGTAGTAGTTCTGGTGAT 195
|||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 109 GATGTTGATAACGAGAACTGCAGTAGCAGCGGAAGTGGCGGTGGTAGT--T-CTGGTGAT 165
Query 196 ACCAAAAGGACTTGCGTTGATTGCGGAACTATCCGAACTCCTCTTTGGCGTGGTGGTCCT 255
||||| || |||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 166 ACCAAGAGAACTTGCGTCGATTGCGGAACTATCCGAACTCCTCTTTGGCGTGGTGGCCCT 225
Query 256 GCCGGACCAAAGTCATTGTGCAATGCTTGTGGGATCAAGAGTAGGAAGAAGAGACAAGCA 315
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 226 GCCGGACCAAAGTCATTGTGCAATGCTTGTGGGATCAAGAGTAGGAAGAAGAGACAAGCT 285
Query 316 GCACTTGGTATGAGATCAGAGGAGAAGAAGAAGAACAGAAAAAGCAATTGCAATAATGAT 375
|| ||||| ||||||||||| ||||||||||| ||||||||||||| || |||||||
Sbjct 286 GCTCTTGGAATGAGATCAGATGAGAAGAAGAAAAACAGAAAAAGCA---GCGGTAATGAT 342
Query 376 CTAAACCTCGACCATCGAAACGCCAAGAA-ATACAAAATCAACATAGTTGATGATGGCAA 434
||||||||||| ||||||||||| ||||| | |||| ||||||| || |||||||| |||
Sbjct 343 CTAAACCTCGATCATCGAAACGCTAAGAACA-ACAAGATCAACAAAGATGATGATGCCAA 401
Query 435 GATCGACA 442
|| |||||
Sbjct 402 GAACGACA 409
Score = 268 bits (145), Expect = 3e-71
Identities = 172/184 (93%), Gaps = 5/184 (3%)
Strand=Plus/Plus
Query 557 CGGTTGAGAAGAAGAGGTTATGGAGAAAACTCGGTGAGGAAGAAAGAGCTGCTGTGCTTC 616
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 485 CGGTTGAGAAGAAGAGGTTATGGAGGAAACTCGGTGAGGAAGAAAGAGCTGCTGTGCTTC 544
Query 617 TCATGGCTCTCTCTTGTAGCTCTGTTTACGCCTAAGTGTTTCTCTGTATTAGGTCATAAT 676
| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 545 TTATGGCGCTCTCTTGTAGCTCTGTTTACGCCTAAGTGTTTCTCTGTATTAGGGAATAAT 604
Query 677 CAAGTGAGAGCGATTTTGATTAACTTAATTAGATAGAGATAATATGTA--AT--GAATGT 732
|||||||||||||||||||||||||||||||||||||| | |||||| || ||||||
Sbjct 605 TAAGTGAGAGCGATTTTGATTAACTTAATTAGATAGAGAGA-TATGTATGATATGAATGT 663
Query 733 GTAA 736
||||
Sbjct 664 GTAA 667
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30193350264
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5