BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G16880.1
Length=1098
Score E
Sequences producing significant alignments: (Bits) Value
Ahg318453 jgi|Araly1|318453|fgenesh1_pm.C_scaffold_3001469 760 0.0
Ahg333398 jgi|Araly1|333398|fgenesh1_pm.C_scaffold_769000001 180 2e-44
Ahg480681 jgi|Araly1|480681|fgenesh2_kg.3__3382__AT2G17830.1 167 2e-40
Ahg485308 jgi|Araly1|485308|fgenesh2_kg.5__1300__AT3G49510.1 75.0 1e-12
Ahg913019 jgi|Araly1|913019|Al_scaffold_0001_3273 73.1 4e-12
Ahg925743 jgi|Araly1|925743|scaffold_201304.1 69.4 5e-11
Ahg908078 jgi|Araly1|908078|Al_scaffold_0002_1159 69.4 5e-11
Ahg930412 jgi|Araly1|930412|scaffold_302869.1 63.9 2e-09
Ahg929891 jgi|Araly1|929891|scaffold_302348.1 60.2 3e-08
> Ahg318453 jgi|Araly1|318453|fgenesh1_pm.C_scaffold_3001469
Length=987
Score = 760 bits (411), Expect = 0.0
Identities = 647/756 (86%), Gaps = 36/756 (5%)
Strand=Plus/Plus
Query 213 CATCAATCTCAACAAGGAAGAAGACGTTGAACCATCTATAAAGTGTAATGGTAAAATTAT 272
|||||||||| ||||||||||||||||| | | | ||||||||||||||||| ||||
Sbjct 175 CATCAATCTCCACAAGGAAGAAGACGTT--A-TAAAT-TAAAGTGTAATGGTAAACTTAT 230
Query 273 TAACCCAATCGGTATGTGTCGAGTCTATCATTGCGGTGGTTTGGTATGCATCACAAAAAG 332
||||| || || | ||| || ||||| |||||||||||||||||||||||||||||| |
Sbjct 231 TAACCTAACCGATGTGTCTCAAGTCTTTCATTGCGGTGGTTTGGTATGCATCACAAATGG 290
Query 333 CTTCAGTAACACTAGAGATGTGGTTTGGAATCCGTATTTGGGG-CAAACTCGGTGGATCA 391
|||| ||||||||| |||||| ||||||||||||| |||||| |||||||||||||||
Sbjct 291 CTTCTCTAACACTAGGGATGTGCTTTGGAATCCGTA-TTGGGGCCAAACTCGGTGGATCG 349
Query 392 AACCTAGAAGCCATCACGCATATATATATGCTATTGGATACGAGACGAAAAAATCGTGCC 451
|| ||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 350 AAGCTAGAAGTCGTCACGCATATATATATGCTATTGGATACGAGACGAAAAAATCCTGCC 409
Query 452 GCAGCTACAAAATTTTGAGTTCTGAACACAATTATATAAATATTGATGATGAACGTGTTG 511
|||||||||||||| ||| ||||| | || ||| || |||||||||| |||||||||
Sbjct 410 GCAGCTACAAAATTGTGACTTCTG--CT-AACTAT-TA--TATTGATGATAAACGTGTTG 463
Query 512 ACTACGAAATCTATGAGTTAGACTCTAATTCATGGAGGGCTCTTGATGTCAATTCCAATT 571
||||||||||||||||||||| |||||||||||||||| ||||||| |||||||| |||
Sbjct 464 GCTACGAAATCTATGAGTTAGATTCTAATTCATGGAGGGTTCTTGATCTCAATTCCGATT 523
Query 572 GGGCGACAGCCTTTTATAAAATGGATGTCTCTGTGAAAGGAAATTCTTATACGTATACT- 630
|||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 524 GGGCGACAGCATTTTATAAAATGGAAGTCTCTGT-AAAGGAAATTCTTATACGTATACTC 582
Query 631 GATTA-----TAGGGGTGACTTCTTGATTTCTTTTGATTTTACAACAGAGAGATTTGGAC 685
|| | ||||||||| |||||| ||| ||||||||||||||||||| ||||| |||
Sbjct 583 GAGCAGGAGGTAGGGGTGAATTCTTGCTTTGTTTTGATTTTACAACAGAGGGATTTAGAC 642
Query 686 CGACTCTGCCTCTGCCGTTCCACTCTCGTTGTGGAGATATTGTGGCTCTCTCTAGTGTTA 745
|| ||||||||||||| |||||||||| | || ||||||||||||||||||||||||||
Sbjct 643 CGGCTCTGCCTCTGCCATTCCACTCTCATCGTCAAGATATTGTGGCTCTCTCTAGTGTTA 702
Query 746 GAGAAGAGAAACTTGCAGTGTTACT-TCACCGCTGCAATATATCA-AGGATGGAGATATG 803
|||| ||| |||||||||||||| | ||| || | ||| || | | |||||||||||
Sbjct 703 GAGATGAGCAACTTGCAGTGTTA-TATCAGCGATATGATACATTACAT-ATGGAGATATG 760
Query 804 GATTACTAACAAGATTGAGCCCAACAATGTGTCGTGGGGAAAGTTGTTCTTAACAGTGGA 863
|||||||| | | || || ||| |||||| |||||||||| ||| |||||||
Sbjct 761 GATTACTACCCA-AT-GA---------TGTCTCGTGGAGAAAGTTGTTATTAGCAGTGGA 809
Query 864 CATGAAACCACTCATTATT-GATGATGGAATTTTCTTCATTGACGAGGAGAAGAAAGTAG 922
|||||||||||||| | || | | |||||| ||||||| ||||||||||||||||||| |
Sbjct 810 CATGAAACCACTCACTGTTTGCT-ATGGAAATTTCTTCGTTGACGAGGAGAAGAAAGTCG 868
Query 923 TTGTGGTTTTTGATAAGGACAAAGAGATGAGAAACC 958
||||||||||||||||||||||||||| ||| |||
Sbjct 869 CTGTGGTTTTTGATAAGGACAAAGAGATAAGACACC 904
Score = 200 bits (108), Expect = 2e-50
Identities = 155/177 (88%), Gaps = 6/177 (3%)
Strand=Plus/Plus
Query 1 ATGACAAAGATGTCCAAACTTCCGAA-TGATTTGTTGGAGGAGATACTCTCTAGAAG-TC 58
||||| | ||||||||| ||||| || |||||||| ||||||||||||||||| || ||
Sbjct 1 ATGACGATGATGTCCAATCTTCC-AAGGGATTTGTTAGAGGAGATACTCTCTAG-AGCTC 58
Query 59 C-ACTGTATTCTATGAGAGCAATACGATTGACTTGCAAAAAGTGGAACACTTTAGCCAAA 117
| || | |||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 59 CAAC-GGATTCTATGAGAGCAGTACGATTGACTTGCAAAAAGTGGAACACTTTAGCCGAG 117
Query 118 GAAGAAAGCTTTACAAAGAAGCAACTCGTTCAAACAAAAGCTGCCAAGGAATTTATG 174
||||||||||||| |||||| |||||| ||| | |||||||||| || |||||||||
Sbjct 118 GAAGAAAGCTTTAGAAAGAAACAACTCCTTCTAGCAAAAGCTGCTAAAGAATTTATG 174
> Ahg333398 jgi|Araly1|333398|fgenesh1_pm.C_scaffold_769000001
Length=924
Score = 180 bits (97), Expect = 2e-44
Identities = 356/472 (75%), Gaps = 54/472 (11%)
Strand=Plus/Plus
Query 646 TTCTTGATTTCTTTTGATTTTACAACAGAGAGATTTGGACCG--ACTCTGCCTCTGCCGT 703
|||||||||| ||||||||||||||||||||||||||||||| ||| | |||||||| |
Sbjct 442 TTCTTGATTTGTTTTGATTTTACAACAGAGAGATTTGGACCGCGACT-T-CCTCTGCCTT 499
Query 704 TCCAC-TCTCGTTGTGGA--GATATTGTG-GCTCTCTCTAGTGTTAGAGAAGAGAAACTT 759
| || | | || | | |||| |||| | |||||| ||||||||||||||| | |||
Sbjct 500 TTGACATTT--TTATA-ATCGATAATGTGAG-TCTCTCGAGTGTTAGAGAAGAGCAGCTT 555
Query 760 GCAGTGTTACTTCACCGCTGCAAT-ATATCAAGGATGGAGATATGGATTACTAACAAGAT 818
| ||||||| ||||| || | | | || ||||||||||||||| ||| ||| |||||
Sbjct 556 GTGGTGTTACATCACCAATGGA-TGAAATTGAGGATGGAGATATGGGTTAGTAATAAGAT 614
Query 819 TGAGCCCAA--CAATGTGTCGTGGGGAAAGTTGTTC----TTAACAGTG-GAC-ATGAAA 870
|||||| || || ||||||||| |||||||||| |||| | || ||| || |
Sbjct 615 TGAGCCTAATGCA--GTGTCGTGGAGAAAGTTGTTAGAGGTTAATA-TGAGACCATTAC- 670
Query 871 C-C-AC-TCATTATT-GA-T-GA---TGGAATTTTCTTCATTGACGAGGAGAAGAAAGTA 921
| | | || || || | | || ||| | |||||||||||||||| |||| || ||
Sbjct 671 CTCGATATCGTT-TTCGTCTTGACCATGGGAGTTTCTTCATTGACGAGAAGAATAAGGTC 729
Query 922 GTTGTGGTTTTTGATAAGGACAAAGAGATGAGAAACC-GTATCACAGCTTACATCATTGG 980
||||||||| | ||||| ||| |||||| | |||||| | | | || ||| |||||||
Sbjct 730 GTTGTGGTTCTGGATAAAGACGAAGAGACG-GAAACCCGCAACTTAGTTTATTTCATTGG 788
Query 981 AGAGAATGGATACTTCAGAA-AAGTGGATCTCGGAGATTCT-GA---AAG--T--TT-TC 1030
|||| ||||||| |||| || ||||||| || ||||| ||| || || | || ||
Sbjct 789 AGAGGATGGATATTTCA-AAGAAGTGGAACTGGGAGAATCTAGAGGCAAAAATGGTTCTC 847
Query 1031 C-TGTTAG-GTGCTCTTATGTACCAAGTTCAGTGGAAATCAAGCAACTGGCA 1080
| | || | | |||||||||| |||||||||||| || | | |||||| |||
Sbjct 848 CAT-TT-GTGAGCTCTTATGTTCCAAGTTCAGTGCAAGTTA-GCAACTCGCA 896
> Ahg480681 jgi|Araly1|480681|fgenesh2_kg.3__3382__AT2G17830.1
Length=1298
Score = 167 bits (90), Expect = 2e-40
Identities = 310/407 (76%), Gaps = 52/407 (13%)
Strand=Plus/Plus
Query 642 TGACTTCTTGATTTCTTTTGATTTTACAACAGAGAGATTTGGACCGAC-TCTGCCTCTGC 700
||| |||||||| | ||||||||||||| ||||||||||||||||| | |||||||||||
Sbjct 703 TGATTTCTTGATATGTTTTGATTTTACATCAGAGAGATTTGGACCG-CGTCTGCCTCTGC 761
Query 701 C-GTT--C-C-ACT-CT-CGTTGTGG-AGATATTGTGGCTCTCTCTAGTGTTAGAGAAGA 752
| || | | || || | ||| || ||||||||| |||||||||||||| |||||||
Sbjct 762 CTTTTAACTCTTCTCCTAC-TTG-GGAAGATATTGTTACTCTCTCTAGTGTTGGAGAAGA 819
Query 753 GAAACTTGCAGTGTTACTTCACCGCTGCAAT-ATATC-AA--GGATGGAGATATGGATTA 808
| ||||| ||||| |||| | ||||| || | || |||||||||| |||||||
Sbjct 820 TCAGCTTGCGGTGTTGTTTCA--G-AGCAATCGTA-CAAAGTGGATGGAGATTTGGATTA 875
Query 809 CTAACAAGATTGAGCCCAACA-ATGTGTCGTGGGGA-AAGTTGTTCTTAACAGTGGACAT 866
| | |||||||||| || ||| | || || | || | |||||||||||| | || || ||
Sbjct 876 CGAGCAAGATTGAG-CCTACAGAGGTTTCAT-GGAACAAGTTGTTCTTAGCGGTTGATAT 933
Query 867 GA-A--AC-CACTC--ATT-A--T--T-G---ATGATGGAATTTTCTTCATTGACGAGGA 911
|| | || ||||| || | | | | ||| ||| | ||||||||||||| || |
Sbjct 934 GAGAGCACTCACTCGTTTTGAGTTCCTGGCCCATGCTGGGAGTTTCTTCATTGACCAGAA 993
Query 912 GAAGAAAGTAGTTGTGGTTTTTGATAAGGACA-AAGAGATG-AGAAACCGTATC---ACA 966
|||||| || ||||||||||||||| | || | | | |||| |||| ||| ||
Sbjct 994 GAAGAATGTTGTTGTGGTTTTTGAT-A-GAGATATG-GATGCCCCTACCG-ATCGTGGCA 1049
Query 967 --GCTTACATCATT-GGAGAGAATGGATACTTCAGAAAAGTGGATCT 1010
|||||||| ||| ||| ||||||||||||||||||||||||||||
Sbjct 1050 TGGCTTACATTATTGGGA-AGAATGGATACTTCAGAAAAGTGGATCT 1095
> Ahg485308 jgi|Araly1|485308|fgenesh2_kg.5__1300__AT3G49510.1
Length=2011
Score = 75.0 bits (40), Expect = 1e-12
Identities = 94/119 (79%), Gaps = 8/119 (7%)
Strand=Plus/Plus
Query 657 TTTTGATTTTACAACAGAGAGATTTGGACCGAC-TCTGCCTCTGCCGTTCCACTCTC--- 712
|||||||||||||||||||||||||||||| || | ||||||||| ||| ||| |||
Sbjct 721 TTTTGATTTTACAACAGAGAGATTTGGACC-ACGTTTGCCTCTGCTGTTTCACCCTCCAT 779
Query 713 GT--T-GTGGAGATATTGTGGCTCTCTCTAGTGTTAGAGAAGAGAAACTTGCAGTGTTA 768
|| | || || | |||| |||| ||| | |||||||| ||||| || || ||||||
Sbjct 780 GTCCTAGTTTTGAAACTGTGACTCTATCTTGGGTTAGAGATGAGAAGCTCGCTGTGTTA 838
> Ahg913019 jgi|Araly1|913019|Al_scaffold_0001_3273
Length=1800
Score = 73.1 bits (39), Expect = 4e-12
Identities = 45/48 (94%), Gaps = 0/48 (0%)
Strand=Plus/Plus
Query 657 TTTTGATTTTACAACAGAGAGATTTGGACCGACTCTGCCTCTGCCGTT 704
||||||||||||||||||||||||||||| || ||| |||||||||||
Sbjct 1287 TTTTGATTTTACAACAGAGAGATTTGGACAGATTCTTCCTCTGCCGTT 1334
> Ahg925743 jgi|Araly1|925743|scaffold_201304.1
Length=1229
Score = 69.4 bits (37), Expect = 5e-11
Identities = 53/60 (88%), Gaps = 4/60 (7%)
Strand=Plus/Plus
Query 343 ACTAGAGA-TGTGGTTTGGAATCCGTATTTGGGGCAAACTCGGTGGATC-AAACCTAGAA 400
|||| ||| |||||||||||||||||||||||||||||| | |||||| ||||| ||||
Sbjct 379 ACTA-AGATTGTGGTTTGGAATCCGTATTTGGGGCAAACAAGATGGATCCAAACC-AGAA 436
> Ahg908078 jgi|Araly1|908078|Al_scaffold_0002_1159
Length=1608
Score = 69.4 bits (37), Expect = 5e-11
Identities = 53/60 (88%), Gaps = 4/60 (7%)
Strand=Plus/Plus
Query 343 ACTAGAGA-TGTGGTTTGGAATCCGTATTTGGGGCAAACTCGGTGGATC-AAACCTAGAA 400
|||| ||| |||||||||||||||||||||||||||||| | |||||| ||||| ||||
Sbjct 769 ACTA-AGATTGTGGTTTGGAATCCGTATTTGGGGCAAACAAGATGGATCCAAACC-AGAA 826
> Ahg930412 jgi|Araly1|930412|scaffold_302869.1
Length=665
Score = 63.9 bits (34), Expect = 2e-09
Identities = 47/53 (89%), Gaps = 2/53 (4%)
Strand=Plus/Plus
Query 887 ATGGAATTTTCTTCATTGACGAGGAGAAGAAAGTAGTTGT-GGTTTTTGATAA 938
|||||||||||||||||||||||||||||||| | || | |||||| |||||
Sbjct 422 ATGGAATTTTCTTCATTGACGAGGAGAAGAAAATCGTCATTGGTTTT-GATAA 473
> Ahg929891 jgi|Araly1|929891|scaffold_302348.1
Length=1220
Score = 60.2 bits (32), Expect = 3e-08
Identities = 41/45 (91%), Gaps = 2/45 (4%)
Strand=Plus/Plus
Query 967 GCTTACATCATTGGAGAGAATGGATACTTCAGAAA-AGTGGATCT 1010
||||||||||||||||||||||||||||| | ||| |||| ||||
Sbjct 1036 GCTTACATCATTGGAGAGAATGGATACTTGA-AAAGAGTGAATCT 1079
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40905889941
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5