BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G16890.1
Length=1980
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479156 jgi|Araly1|479156|fgenesh2_kg.3__1857__AT3G16890.1 2898 0.0
> Ahg479156 jgi|Araly1|479156|fgenesh2_kg.3__1857__AT3G16890.1
Length=1962
Score = 2898 bits (1569), Expect = 0.0
Identities = 1847/1981 (93%), Gaps = 20/1981 (1%)
Strand=Plus/Plus
Query 1 ATGAGAGGCTTTGCTTCTTCAGCATCTAGAATAGCGACGGCGGCAGCAGCTTCCAAATCA 60
|||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1 ATGAGAGGCTTTGCTTCTTCAGCATCTAGAATAGCGACGGCGGCAGCAGC-T-----TC- 53
Query 61 CTAAACGCTTCCACATCCGTAAACCCTAAGCTCTCAAAAACCCTAAACTCTTCAGGTAAA 120
| ||| | | || |||||||||| ||||||||||||||||| || |||||||||
Sbjct 54 C-AAA-G------C--CC-TAAACCCTAACCTCTCAAAAACCCTAAATTCCTCAGGTAAA 102
Query 121 CCCACCAATCCTCTGAACCAGCGTTACATTTCGCAAGTCATAGAGAGAAAAGATTGGTTT 180
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 103 CCCACCAGTCCTCTGAACCAGCGTTACATTTCGCAAGTCATAGAGAGAAAAGATTGGTTT 162
Query 181 TTGATACTGAATCAAGAATTCACCACTCATCGAATTGGTCTCAACACTCGATTCGTCATC 240
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 163 TTGATACTGAATCAAGAATTCACCACTCATCGAATTGGTTTAAACACTCGATTCGTCATC 222
Query 241 AGCGTTTTGCAGAATCAAGACAACCCATTACACTCCCTGCGATTTTACCTCTGGGTCTCC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 AGCGTTTTGCAGAATCAAGACAACCCATTACACTCCCTGCGATTTTACCTCTGGGTCTCC 282
Query 301 AACTTCGACCCGGTTTACGCTAAGGATCAGTCTCTGAAGAGTGTTCTAGGGAACGCACTT 360
||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 283 AACACCGACCCTGTTTACGCTAAGGATCAGTCTCTGAAGAGCGTTCTAGGGAACGCACTT 342
Query 361 TTTCGTAAAGGCCCCTTATTGTTGTCTATGGAATTGCTTAAAGAGATTAGAGATTCAGGG 420
|||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 343 TTTCGTAAAGGCCCTTTATTGTTGTCTATGGAATTGCTTAAGGAGATTAGAGAATCAGGG 402
Query 421 TATCGGATTAGTGATGAATTGATGTGTGTTTTGATCGGAAGCTGGGGAAGATTAGGTTTA 480
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 403 TATCGAATTACTGATGAATTGATGTGTGTTTTGATCGGAAGCTGGGGAAGATTAGGTTTA 462
Query 481 GCTAAGTACTGTAATGATGTTTTTGCTCAGATATCTTTTCTTGGAATGAAACCAAGTACA 540
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 463 GCTAAGTATTGTAATGATCTTTTTGCTCAGATATCTTTTCTTGGAATGAAACCAAGTACA 522
Query 541 AGGCTTTATAATGCTGTGATTGATGCGTTGGTGAAGTCTAATTCACTTGATTTGGCTTAC 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 523 AGGCTTTATAATGCTGTGATTGATGCGTTGGTGAAGTCTAATTCACTTGATTTGGCTTAC 582
Query 601 CTCAAGTTTCAGCAGATGCGTAGTGATGGCTGTAAACCGGATCGGTTTACCTATAATATA 660
| ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 583 TTGAAGTTTCAGCAGATGCGTAGTGATGATTGTAAACCGGATCGTTTTACCTATAATATA 642
Query 661 CTTATACATGGTGTTTGCAAGAAGGGTGTGGTTGATGAAGCTATTCGATTGGTTAAACAG 720
|| || |||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 643 CTCATCCATGGTGTTTGCAAGAAGGGTGTGGTTGATGAGGCGATTCGATTGGTTAAACAG 702
Query 721 ATGGAAC-AGGAAGGGAATAGACCCAATGTGTTCACATACACGATTTTGATCGACGGGTT 779
||||||| || ||||||| ||||| ||||||||||| || ||||||||||| ||||||||
Sbjct 703 ATGGAACGAG-AAGGGAACAGACCTAATGTGTTCACTTATACGATTTTGATTGACGGGTT 761
Query 780 TTTGATAGCAGGGAGGGTTGATGAGGCGTTGAAGCAATTGGAGATGATGCGGGTGAGAAA 839
|||||| || |||||| |||| ||||| |||||||||||||||||||||| || ||||||
Sbjct 762 TTTGATCGCGGGGAGGATTGAGGAGGCATTGAAGCAATTGGAGATGATGCAGGCGAGAAA 821
Query 840 GTTGAATCCTAATGAAGCTACAATCAGAACTTTCGTACACGGGATTTTCCGTTGCTTGCC 899
|||||||||||||||||||||||| |||||||| || || |||||||| |||||||||||
Sbjct 822 GTTGAATCCTAATGAAGCTACAATTAGAACTTTGGTTCATGGGATTTTTCGTTGCTTGCC 881
Query 900 GCCGTGTAAAGCGTTTGAGGTTTTGGTTGGGTTTATGGAGAAAGACTCAAACTTGCAAAG 959
||||||| ||||||||||||||||| ||||||||||||||||| |||| | ||||||||
Sbjct 882 GCCGTGTGAAGCGTTTGAGGTTTTGCTTGGGTTTATGGAGAAAAACTCGATTTTGCAAAG 941
Query 960 AGTTGGTTACGATGCTGTGTTGTATTGTCTTTCAAACAACTCAATGGCTAAAGAGACTGG 1019
||| | ||| ||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 942 AGTAGCTTATGATACTGTGTTGTATTGTCTTTCAAATAACTCAATGGCTAAAGAGACTGC 1001
Query 1020 TCAATTCTTGAGGAAGATAGGTGAGAGAGGTTATATTCCGGATAGCTCAACATTCAATGC 1079
|| ||||||||||| | |||||| ||||||||||||||||||||||||| ||||||||
Sbjct 1002 TCTTTTCTTGAGGAAAACGGGTGAGCGAGGTTATATTCCGGATAGCTCAACGTTCAATGC 1061
Query 1080 TGCGATGAGTTGTCTCCTAAAAGGGCATGATCTTGTTGAGACTTGTAGGATATTTGACGG 1139
|||||||| ||||||| |||||||||||||||| |||||||| ||| |||||||||||||
Sbjct 1062 TGCGATGAATTGTCTCTTAAAAGGGCATGATCTGGTTGAGACGTGTGGGATATTTGACGG 1121
Query 1140 TTTTGTCAGCCGTGGAGTTAAGCCAGGATTCAATGGTTATCTTGTGTTAGTTCAAGCTCT 1199
||||||||| |||||||||||||||||||| || ||||||||||| ||||||||||||||
Sbjct 1122 TTTTGTCAGTCGTGGAGTTAAGCCAGGATTTAACGGTTATCTTGTATTAGTTCAAGCTCT 1181
Query 1200 GTTGAATGCTCAGAGGTTCTCTGAAGGTGACCGGTATCTGAAACAAATGGGTGTTGACGG 1259
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 1182 GTTGAATGCTCAGAGGTTCTCTGAAGGTGACCGGTATCTGAAACAACTGGGTGTTGATGG 1241
Query 1260 GCTTCTATCAAGTGTATATAGTTATAATGCGGTAATTGACTGTCTCTGCAAGGCTCGACG 1319
|||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| ||
Sbjct 1242 GCTTCTATCAAGTGTATATACTTATAATGCGGTTATTGACTGTCTCTGCAAGGCTCGTCG 1301
Query 1320 CATAGAGAATGCAGCTATGTTCTTAACAGAGATGCAGGATAGAGGTATTTCTCCGAATCT 1379
| |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1302 GACAGAGCATGCAGCAATGTTCTTAACAGAGATGCAGGATAGAGGTATTTCTCCGAATCT 1361
Query 1380 CGTAACTTTCAATACCTTTCTGAGCGGTTATAGCGTGAGGGGTGATGTAAAGAAGGTTCA 1439
| ||||||||||||| ||||| ||||||||||||| | |||| |||||||||||||||||
Sbjct 1362 CATAACTTTCAATACTTTTCTAAGCGGTTATAGCGCGGGGGGCGATGTAAAGAAGGTTCA 1421
Query 1440 CGGCGTGCTAGAGAAGCTTCTTGTACATGGTTTCAAACCAGACGTGATCACTTTCAGTTT 1499
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1422 CGGCGTGCTAGAGAAGCTTCTTGAACATGGTTGCAAACCAGACGTGATCACTTTCAGTTT 1481
Query 1500 GATCATAAACTGTCTTTGCAGAGCAAAAGAAATTAAAGATGCATTTGACTGTTTCAAGGA 1559
||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 1482 GATCATAAACTGTCTTTGCCGAGCAAAAGAAATCAAAGATGCATTTGACTGTTTCAAGGA 1541
Query 1560 GATGTTGGAATGGGGTATTGAGCCAAACGAGATCACATACAATATCTTGATTCGCTCCTG 1619
||||||||||||||| ||| | ||||| |||||||||||||||||| ||||||||||||
Sbjct 1542 GATGTTGGAATGGGGGATTAAACCAAATGAGATCACATACAATATCCTGATTCGCTCCTC 1601
Query 1620 TTGTTCCACCGGAGATACCGATAGATCAGTGAAGCTGTTTGCGAAGATGAAGGAAAACGG 1679
|||||| ||||||||||||| |||||||||||||||||||||||| |||||||||| |||
Sbjct 1602 TTGTTCAACCGGAGATACCGGTAGATCAGTGAAGCTGTTTGCGAATATGAAGGAAAGCGG 1661
Query 1680 GTTAAGTCCAGACCTTTATGCGTACAATGCGACTATTCAGAGTTTTTGCAAGATGAGAAA 1739
||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |||
Sbjct 1662 GTTAAGTCCAGACCTTTATGCCTACAATGCGATTATTCAGAGTTTTTGCAAGATGAAAAA 1721
Query 1740 GGTTAAGAAGGCTGAGGAATTGCTTAAAACAATGCTGAGAATTGGTTTGAAACCAGATAA 1799
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 1722 GGTTAAGAAGGCTGAGGAATTGCTTAAAACAATGTTGAGGATTGGTTTGAAACCAGATAA 1781
Query 1800 CTTTACATATAGCACTCTCATCAAAGCTCTAAGTGAATCTGGAAGAGAGAGTGAAGCAAG 1859
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1782 CTTTACATACAGCACTCTCATCAAAGCTCTAAGTGAATCTGGAAGAGAGAGTGAAGCGAG 1841
Query 1860 AGAGATGTTCAGTTCAATCGAAAGACATGGATGTGTTCCAGATTCATATACTAAGCGTCT 1919
|||||||||||||||| | |||||||||||||||||||| |||||||||| |||||||||
Sbjct 1842 AGAGATGTTCAGTTCAGTGGAAAGACATGGATGTGTTCCGGATTCATATAGTAAGCGTCT 1901
Query 1920 TGTTGAAGAACTTGACCTAAGAAAAAGTGGACTCTCGAGAGAAACCGTGTCAGCCTCATA 1979
||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 1902 TGTTGAAGAACTTAACCTTAGACAAAGTGGACTCTCGAGAGAAACCGTGTCAGCCTCATA 1961
Query 1980 G 1980
|
Sbjct 1962 G 1962
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74428338730
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5