BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G16895.1

Length=434
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg930135 jgi|Araly1|930135|scaffold_302592.1                        272    1e-72


> Ahg930135 jgi|Araly1|930135|scaffold_302592.1
Length=283

 Score =  272 bits (147),  Expect = 1e-72
 Identities = 247/293 (84%), Gaps = 16/293 (5%)
 Strand=Plus/Plus

Query  10   GTTCATAGAAAAATTTATTATGGGTAGTACGAAAACTTTGGTGACATGTTTCCTTGTAAT  69
            ||||| ||||||| ||| ||||| || ||| ||||| |||||| | ||||||||||||||
Sbjct  2    GTTCACAGAAAAAATTACTATGGCTAATACTAAAACCTTGGTGGCTTGTTTCCTTGTAAT  61

Query  70   AATACTTGCAGTTTCGTTGCCTAACAACAACGTTTTGGCTTCAGATGCAAGGATCGAAGG  129
            ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||  
Sbjct  62   AATACTTGCAGTTTCGTTGTCTAACAACAACGTTTTGGCTTCAGATGCAGGGATCGAAAA  121

Query  130  CTTCTCTTTTGACAACTGCAATATTAGGTGTTCCGAAGATTACTGGAATGATGAATGTAA  189
            |||||| |||||||||||| | |||||||||| ||  ||   | ||   |||||||||| 
Sbjct  122  CTTCTCATTTGACAACTGCCACATTAGGTGTTACG--GA---C-GG---GATGAATGTA-  171

Query  190  T-AAGGACTGTCTTAGAGCTGGCTTTCAA-AAAGGTGGACAGTGTGGTTCTCCTTGTATT  247
            | ||  ||||| ||| |  ||| ||| || |||||||||||||||||||||  |||||||
Sbjct  172  TGAACTACTGTTTTAAAATTGGATTT-AAGAAAGGTGGACAGTGTGGTTCTATTTGTATT  230

Query  248  CCATGTCC-AGTGAAATGTTGTTGTCAAAAGTAATACAAACTTATAAATCCAT  299
             ||||||| | ||||||||||||| |||| |||||||||||||||| | ||||
Sbjct  231  ACATGTCCTA-TGAAATGTTGTTGCCAAATGTAATACAAACTTATATA-CCAT  281



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15643791490


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5