BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G16900.1
Length=558
Score E
Sequences producing significant alignments: (Bits) Value
Ahg341828 jgi|Araly1|341828|fgenesh1_pg.C_scaffold_3001591 843 0.0
> Ahg341828 jgi|Araly1|341828|fgenesh1_pg.C_scaffold_3001591
Length=564
Score = 843 bits (456), Expect = 0.0
Identities = 529/564 (94%), Gaps = 6/564 (1%)
Strand=Plus/Plus
Query 1 ATGGCAAAACAAGATCCCACT---AGCAGCAACACGATGCTACCACTCGTAGGATCTGAG 57
||||||||||||||| ||| |||||||||||||| |||||||||||||||||||||
Sbjct 1 ATGGCAAAACAAGATGGGACTAGCAGCAGCAACACGATACTACCACTCGTAGGATCTGAG 60
Query 58 TTTGTTCGTCCACAGCCGTTAGATCTAACGATAACCGGAGATACAGTGAAGGACGCAACC 117
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTTGTTCGTCCTCAACCGTTAGATCTAACGATAACCGGAGATACAGTGAAGGACGCAACC 120
Query 118 GGGAACAAAGTGTTCAAAGTCAAAACGCCTCTCTTTGGTCTCCACAACAAAAGAATCTTG 177
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 121 GGGAACAAAGTGTTCAAAGTCAAAACGCCTCTCTTTGGTCTCCACAACAAAAGAATTTTG 180
Query 178 GTTGATCCTAATGACTCTCCCATTGTCACCATGAAAATGAAGGTGACAAGTAAGCACGAT 237
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 181 GTTGATCCTAATGACTCTCCCATTGTCACCATGAAAATGAAGGTGACTAGTAAGCATGAT 240
Query 238 CGATGGCAAGTGTATAGAGGAAGTGATTTAGATGATAAGATCTTCACGGTTAAAAGATCT 297
||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 241 CGATGGCAAGTGTATAGAGGAAGTGATTTAGATAATAAGATCTTCACAGTTAAAAGATCC 300
Query 298 TCGACTGTTCAATTGAAGACAAGAGTTGAAGTATTCTTGAAACATAACCAGACCAGAGAA 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 301 TCGACTGTTCAATTGAAGACAAGAGTTGAAGTATTCTTGAAACATAACCAGACCAAAGAA 360
Query 358 TCGTCTTGTGATTTCACAATTAAAGGTCGGTTTATGAAACGTGCATGTACTATCTATGTC 417
|||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||
Sbjct 361 TCGTCTTGTGATTTCACAATCAAAGGTCGCTTTATGAAACGTGCTTGTACTATCTATGTT 420
Query 418 GCAGACTCTACCAAAATCATCGCTCAGGTATATGAAGGACATGAGAGATTAGTGGCTACA 477
| ||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 421 GGAGATTCTACCAAAATCATCGCTCAGGTATATGAAGGAGATGAGAGACCAGTGGCTACA 480
Query 478 ATTTATCCTAATGTCGACTATGCTTTTATTGTTACACTTATCTTTATATTTGACCTCATT 537
|||||||||||||||| |||||||| ||||| ||||| ||||||||||||||||||||
Sbjct 481 GTTTATCCTAATGTCGATTATGCTTTCATTGTCACACTAATCTTTATATTTGACCTCATC 540
Query 538 AATA-TGG-GG-ACTGGGATCTGA 558
|||| ||| || |||| |||||||
Sbjct 541 AATAATGGTGGGACTGCGATCTGA 564
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20375084526
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5