BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G16920.1 Length=1227 Score E Sequences producing significant alignments: (Bits) Value Ahg318457 jgi|Araly1|318457|fgenesh1_pm.C_scaffold_3001473 1524 0.0 > Ahg318457 jgi|Araly1|318457|fgenesh1_pm.C_scaffold_3001473 Length=1002 Score = 1524 bits (825), Expect = 0.0 Identities = 943/1002 (94%), Gaps = 0/1002 (0%) Strand=Plus/Plus Query 49 ATGGTTTCGAAACCGCTATTCTCCCTATTGCTTCTCACGGTTGCATTGGTTGTGTTTCAA 108 |||||||| ||||||||||||||||| ||||||||||||| ||||| || ||||||||| Sbjct 1 ATGGTTTCAAAACCGCTATTCTCCCTGCTGCTTCTCACGGTGGCATTAGTCGTGTTTCAA 60 Query 109 ACCGGAACCCTTGTCAACGCTGAAGATTCCGAGCCTTCGAGTTCAACGAGAAAGCCTCTG 168 ||| || |||| |||||||||||||||||||||||||||||||| | |||||||||||| Sbjct 61 ACCCGATCCCTAGTCAACGCTGAAGATTCCGAGCCTTCGAGTTCCGCTAGAAAGCCTCTG 120 Query 169 GTGAAGATTGTGAAAGGTAAAAAATTATGCGACAAAGGATGGGAATGCAAAGGATGGTCC 228 |||||||| || || || ||||| ||||||||||||||||||||||| |||||||||||| Sbjct 121 GTGAAGATCGTCAAGGGGAAAAAGTTATGCGACAAAGGATGGGAATGTAAAGGATGGTCC 180 Query 229 GAGTATTGTTGCAACCATACAATCTCCGAtttttttGAGACATATCAATTCGAGAATCTA 288 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 GAGTATTGTTGCAACCATACAATCTCCGATTTTTTTGAGACATATCAATTCGAGAATCTA 240 Query 289 TTCTCTAAGCGTAACAGTCCAGTGGCTCACGCCGTCGGCTTTTGGGATTACCGATCATTC 348 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 241 TTCTCTAAGCGTAACAGTCCCGTGGCTCACGCCGTCGGCTTTTGGGATTACCGATCATTC 300 Query 349 ATTACTGCGGCTGCCGAGTACCAGCCTCTTGGTTTCGGTACTGCTGGTGAGAAACTTCAA 408 || ||||| ||||||||||| || |||||||| ||||||||||||||||||||||||||| Sbjct 301 ATCACTGCTGCTGCCGAGTATCAACCTCTTGGGTTCGGTACTGCTGGTGAGAAACTTCAA 360 Query 409 GGGATGAAGGAAGTCGCTGCGTTTCTTGGCCACGTTGGGAGCAAAACCTCATGCGGGTAC 468 || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 361 GGCATGAAGGAAGTCGCTGCGTTTCTTGGCCACGTTGGAAGCAAAACCTCATGCGGGTAC 420 Query 469 GGGGTTGCAACAGGCGGACCATTAGCTTGGGGATTGTGTTACAACAAGGAGATGAGTCCT 528 |||||||| || || ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 GGGGTTGCGACGGGTGGACCATTAGCTTGGGGATTGTGTTACAACAAGGAGATGAGTCCT 480 Query 529 GATCAGCTTTATTGCGATGATTACTACAAATTGACATATCCTTGTACTCCTGGTGTCTCG 588 ||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 481 GATCAACTCTATTGCGATGATTACTACAAATTGACGTATCCTTGTACTCCTGGTGTCTCG 540 Query 589 TACCACGGTCGAGGAGCTTTACCGGTTTACTGGAATTACAATTATGGTCAAACCGGGGAG 648 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 TACCACGGTAGAGGAGCTTTACCGGTTTACTGGAATTACAATTATGGTCAAACCGGGGAG 600 Query 649 GCTTTGAAAGTGGATCTACTGAGTCATCCAGAGTATCTCGAGAACAATGCTACGTTAGCG 708 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| Sbjct 601 GCTTTGAAAGTGGATCTACTGAGTCATCCAGAGTATCTTGAGAACAATGCTACGTTGGCG 660 Query 709 TTTCAAGCGGCGATTTGGCGGTGGATGACGCCACCGAAGAAGCATTTACCGTCGGCGCAC 768 ||||| || ||||||||||| |||||||||||||| ||||||||||| || ||||||||| Sbjct 661 TTTCAGGCAGCGATTTGGCGATGGATGACGCCACCAAAGAAGCATTTGCCATCGGCGCAC 720 Query 769 GATGTTTTCGTCGGAAAATGGAAGCCAACAAAGAATGACACTGCTGCAAAACGAACTCCG 828 ||||||||||| ||||||||||||||||| ||||||||||| || || ||||| ||||| Sbjct 721 GATGTTTTCGTTGGAAAATGGAAGCCAACGAAGAATGACACAGCGGCGAAACGTACTCCA 780 Query 829 GGGTTTGGAGCCACCATAAACGTTCTTTACGGCGATCAAATCTGCAACAGCGGATTCGAT 888 || || |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 781 GGATTCGGAGCCACCATAAACGTTCTTTACGGCGATCAAATCTGCAACAGCGGATTCGAT 840 Query 889 AACGATGAGATGAACAACATTGTTTCTCATTATTTGTATTATCTTGATCTGATAGGTGTT 948 |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| Sbjct 841 AACGATGAGATGAACAACATCGTTTCTCATTATTTGTATTATCTAGATCTGATAGGTGTT 900 Query 949 GGACGAGAAGAAGCTGGTCCTCACGAGAAGCTGTCATGCGCAGATCAAGAACCTTTTTCT 1008 |||||||||||||||||||||||||||||||| || ||||| |||||||||||||| ||| Sbjct 901 GGACGAGAAGAAGCTGGTCCTCACGAGAAGCTATCGTGCGCGGATCAAGAACCTTTCTCT 960 Query 1009 TCTTCCTCCTCTGCTCCTCCGAGTTCTGGTTCCTCTTCTTGA 1050 ||||| |||||||||||| | ||||||||||||||||||||| Sbjct 961 TCTTCTTCCTCTGCTCCTACAAGTTCTGGTTCCTCTTCTTGA 1002 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45823746234 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5