BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G16920.1
Length=1227
Score E
Sequences producing significant alignments: (Bits) Value
Ahg318457 jgi|Araly1|318457|fgenesh1_pm.C_scaffold_3001473 1524 0.0
> Ahg318457 jgi|Araly1|318457|fgenesh1_pm.C_scaffold_3001473
Length=1002
Score = 1524 bits (825), Expect = 0.0
Identities = 943/1002 (94%), Gaps = 0/1002 (0%)
Strand=Plus/Plus
Query 49 ATGGTTTCGAAACCGCTATTCTCCCTATTGCTTCTCACGGTTGCATTGGTTGTGTTTCAA 108
|||||||| ||||||||||||||||| ||||||||||||| ||||| || |||||||||
Sbjct 1 ATGGTTTCAAAACCGCTATTCTCCCTGCTGCTTCTCACGGTGGCATTAGTCGTGTTTCAA 60
Query 109 ACCGGAACCCTTGTCAACGCTGAAGATTCCGAGCCTTCGAGTTCAACGAGAAAGCCTCTG 168
||| || |||| |||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 61 ACCCGATCCCTAGTCAACGCTGAAGATTCCGAGCCTTCGAGTTCCGCTAGAAAGCCTCTG 120
Query 169 GTGAAGATTGTGAAAGGTAAAAAATTATGCGACAAAGGATGGGAATGCAAAGGATGGTCC 228
|||||||| || || || ||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 121 GTGAAGATCGTCAAGGGGAAAAAGTTATGCGACAAAGGATGGGAATGTAAAGGATGGTCC 180
Query 229 GAGTATTGTTGCAACCATACAATCTCCGAtttttttGAGACATATCAATTCGAGAATCTA 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GAGTATTGTTGCAACCATACAATCTCCGATTTTTTTGAGACATATCAATTCGAGAATCTA 240
Query 289 TTCTCTAAGCGTAACAGTCCAGTGGCTCACGCCGTCGGCTTTTGGGATTACCGATCATTC 348
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 241 TTCTCTAAGCGTAACAGTCCCGTGGCTCACGCCGTCGGCTTTTGGGATTACCGATCATTC 300
Query 349 ATTACTGCGGCTGCCGAGTACCAGCCTCTTGGTTTCGGTACTGCTGGTGAGAAACTTCAA 408
|| ||||| ||||||||||| || |||||||| |||||||||||||||||||||||||||
Sbjct 301 ATCACTGCTGCTGCCGAGTATCAACCTCTTGGGTTCGGTACTGCTGGTGAGAAACTTCAA 360
Query 409 GGGATGAAGGAAGTCGCTGCGTTTCTTGGCCACGTTGGGAGCAAAACCTCATGCGGGTAC 468
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 361 GGCATGAAGGAAGTCGCTGCGTTTCTTGGCCACGTTGGAAGCAAAACCTCATGCGGGTAC 420
Query 469 GGGGTTGCAACAGGCGGACCATTAGCTTGGGGATTGTGTTACAACAAGGAGATGAGTCCT 528
|||||||| || || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GGGGTTGCGACGGGTGGACCATTAGCTTGGGGATTGTGTTACAACAAGGAGATGAGTCCT 480
Query 529 GATCAGCTTTATTGCGATGATTACTACAAATTGACATATCCTTGTACTCCTGGTGTCTCG 588
||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 481 GATCAACTCTATTGCGATGATTACTACAAATTGACGTATCCTTGTACTCCTGGTGTCTCG 540
Query 589 TACCACGGTCGAGGAGCTTTACCGGTTTACTGGAATTACAATTATGGTCAAACCGGGGAG 648
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TACCACGGTAGAGGAGCTTTACCGGTTTACTGGAATTACAATTATGGTCAAACCGGGGAG 600
Query 649 GCTTTGAAAGTGGATCTACTGAGTCATCCAGAGTATCTCGAGAACAATGCTACGTTAGCG 708
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 601 GCTTTGAAAGTGGATCTACTGAGTCATCCAGAGTATCTTGAGAACAATGCTACGTTGGCG 660
Query 709 TTTCAAGCGGCGATTTGGCGGTGGATGACGCCACCGAAGAAGCATTTACCGTCGGCGCAC 768
||||| || ||||||||||| |||||||||||||| ||||||||||| || |||||||||
Sbjct 661 TTTCAGGCAGCGATTTGGCGATGGATGACGCCACCAAAGAAGCATTTGCCATCGGCGCAC 720
Query 769 GATGTTTTCGTCGGAAAATGGAAGCCAACAAAGAATGACACTGCTGCAAAACGAACTCCG 828
||||||||||| ||||||||||||||||| ||||||||||| || || ||||| |||||
Sbjct 721 GATGTTTTCGTTGGAAAATGGAAGCCAACGAAGAATGACACAGCGGCGAAACGTACTCCA 780
Query 829 GGGTTTGGAGCCACCATAAACGTTCTTTACGGCGATCAAATCTGCAACAGCGGATTCGAT 888
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 GGATTCGGAGCCACCATAAACGTTCTTTACGGCGATCAAATCTGCAACAGCGGATTCGAT 840
Query 889 AACGATGAGATGAACAACATTGTTTCTCATTATTTGTATTATCTTGATCTGATAGGTGTT 948
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 841 AACGATGAGATGAACAACATCGTTTCTCATTATTTGTATTATCTAGATCTGATAGGTGTT 900
Query 949 GGACGAGAAGAAGCTGGTCCTCACGAGAAGCTGTCATGCGCAGATCAAGAACCTTTTTCT 1008
|||||||||||||||||||||||||||||||| || ||||| |||||||||||||| |||
Sbjct 901 GGACGAGAAGAAGCTGGTCCTCACGAGAAGCTATCGTGCGCGGATCAAGAACCTTTCTCT 960
Query 1009 TCTTCCTCCTCTGCTCCTCCGAGTTCTGGTTCCTCTTCTTGA 1050
||||| |||||||||||| | |||||||||||||||||||||
Sbjct 961 TCTTCTTCCTCTGCTCCTACAAGTTCTGGTTCCTCTTCTTGA 1002
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45823746234
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5