BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G16930.1

Length=210
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg341831 jgi|Araly1|341831|fgenesh1_pg.C_scaffold_3001594           250    3e-66


> Ahg341831 jgi|Araly1|341831|fgenesh1_pg.C_scaffold_3001594
Length=1206

 Score =  250 bits (135),  Expect = 3e-66
 Identities = 158/169 (93%), Gaps = 2/169 (1%)
 Strand=Plus/Plus

Query  4    CCATCTGCGGGaaaaaaaGAAGAAGATGCATTATATGGATGGCAAGTCTGGCAC-ACGAA  62
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct  202  CCATCTGCGGGAAAAAAAGAAGAAGATGCATTATATGGATGGCAAGTCTGGCACCA-GAA  260

Query  63   CGGCACAAAATGTCCGGAGGGATCAATTCCAATTCGAAGGCTGATTTCCCTTGGGAACGA  122
            ||||||||||||||||||||||||||||||| |||||||||| ||||| | || ||||||
Sbjct  261  CGGCACAAAATGTCCGGAGGGATCAATTCCAGTTCGAAGGCTAATTTCTCATGAGAACGA  320

Query  123  GACTATCATCACTTCTAACGCCGGGGATAGAGTCACCGGTGGACACGAG  171
            |||| |||||| ||||||||||||||||||||| ||||||||||| |||
Sbjct  321  GACTGTCATCAGTTCTAACGCCGGGGATAGAGTTACCGGTGGACATGAG  369


 Score = 52.8 bits (28),  Expect = 9e-07
 Identities = 28/28 (100%), Gaps = 0/28 (0%)
 Strand=Plus/Plus

Query  181  ACGAGTTCAGCTTGGGTCAACTCTGGCT  208
            ||||||||||||||||||||||||||||
Sbjct  461  ACGAGTTCAGCTTGGGTCAACTCTGGCT  488



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 7141204807


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5