BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G16940.1
Length=3017
Score E
Sequences producing significant alignments: (Bits) Value
Ahg318458 jgi|Araly1|318458|fgenesh1_pm.C_scaffold_3001474 3258 0.0
Ahg355148 jgi|Araly1|355148|fgenesh1_pg.C_scaffold_7002321 1144 0.0
> Ahg318458 jgi|Araly1|318458|fgenesh1_pm.C_scaffold_3001474
Length=2574
Score = 3258 bits (1764), Expect = 0.0
Identities = 1931/2012 (96%), Gaps = 10/2012 (0%)
Strand=Plus/Plus
Query 713 GATACAGTTGTTAGAAATCATGATATTAGCCTTCATGATATCAATACGCTTGATTGGGAT 772
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 571 GATACCGTTGTTAGAAATCATGATATTAGCCTTCATGATATCAATACGCTTGATTGGGAT 630
Query 773 GAGCTGCTAGTACCAACCGATCTTAATAACCAATCTGCACCAACCGTAGATAATCTTTCA 832
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 631 GAGCTGCTAGTACCAACCGATCTTAATAACCAATCTGCACCAACCGTAGATGATCTGTCA 690
Query 833 TATTTCACAGAACCGCTCCAAAATGCTGCAAATGGCACTGCAGAGCATGGGAATGCGACA 892
|| ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 691 TACTTCACAGAATCGCTCCAAAATGCTGCAAATGGCACTGCAGAGCATGTGAATGCGACA 750
Query 893 GTGGCTGATGGATCTCTTGATGCTTTGCTTAACGATGGTCCACAAAGTCGAGAGAGTTTT 952
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 751 GTGGCTGATGGATCTCTTGATGCTTTGCTTAACAATGGTCCACAAAGTCGAGAGAGTTTT 810
Query 953 GGAAGGTGGATGAATTCATTTATCAGCGAATCTAATGGCTCACTGGAGGATCCTTCCTTT 1012
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 811 GGAAGGTGGATGAATTCATTTATCAGCGAATCTAATGGCTCGCTGGAGGATCCTTCCTTT 870
Query 1013 GAACCCATGGTTATGCCTAGGCAGGATCCATTAGCTCCTCAAGCTGTATTTCATTCTCAC 1072
||||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 871 GAACCCATGGTTACGCCTAAGCAGGACCCATTAGCTCCTCAAGCTGTATTTCATTCTCAC 930
Query 1073 TCTAACATACCTGAGCAAGTGTTTAACATAACCGATGTTTCACCTGCTTGGGCCTATTCT 1132
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 931 TCTAACATACCTGAGCAAGTGTTTAACATAACTGATGTTTCACCTTCTTGGGCCTATTCT 990
Query 1133 TCCGAGAAAACTAAGATTCTGGTAACTGGGTTCTTGCATGACAGTTATCAACATCTCGAA 1192
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 991 TCAGAGAAAACTAAGATTCTTGTAACTGGGTTCTTGCATGACAGTTATCAACATC---AT 1047
Query 1193 AGATCAAACCTTTATTGCGTTTGCGGTGACTTTTGTGTCCCTGCGGAATATCTCCAGGCT 1252
| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1048 -G--CAAACCTTTATTGCGTTTGCGGTGACTTTTGTGTCCCTGCAGAATATCTCCAGGCG 1104
Query 1253 GGAGTCTACCGTTGCATCATACCTCCACACTCGCCTGGTATGGTAAACCTCTATCTTAGT 1312
||||| |||||||| ||||||||||| ||||| ||||| ||||||||||||||||||||
Sbjct 1105 GGAGTGTACCGTTGTATCATACCTCCGCACTCACCTGGGATGGTAAACCTCTATCTTAGC 1164
Query 1313 GCAGATGGACACAAACCAATCAGCCAATGTTTCAGATTCGAACACCGTGCAGTCCCAGTT 1372
||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||||
Sbjct 1165 GCAGATGGACACAAACCAATCAGCCAATGTTTCAGGTTTGAACACCGTTCAGTCCCAGTT 1224
Query 1373 CTTGATAAGACCGTCCCTGAAGACAATCAAGATTCCAAATGGGAAGAGTTTGAGTTCCAA 1432
||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||
Sbjct 1225 CTTGATAAGACCGTCCCTGAAGAAAATCAAGAATCCAAATGGGAAGAATTTGAGTTCCAA 1284
Query 1433 GTTC-GACTTTCTCATCTTCTGTTTACGTCTTCCAACAAACTCAACGTTCTCTCCAGCAA 1491
|| | |||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1285 GT-CAGACTTTCTCATCTTCTGTTTACTTCTTCCAACAAACTCAACGTTCTCTCTAGCAA 1343
Query 1492 AATCTCACCT-CATAACCTGCGAGATGCTAAAAAACTCGCTAGCAAAACAAATCATCTCT 1550
|||| ||||| | ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1344 AATCCCACCTTC-TAACCTGCGAGATGCTAAAAAACTCGCTAGCAAAACAAACCATCTCT 1402
Query 1551 TAAACAGTTGGGCTTATCTAGTCAAGTCCATCCAGGGGAATAAGGTATCGTTTGATCAAG 1610
||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 1403 TAAACAGCTGGGCTTATCTAATCAAGTCCATCCAGGGGAATAAGGTGTCGTTTGATCAAG 1462
Query 1611 CGAAAGATCATCTCTTCGAGCTTTCTCTGAAGAACAGGCTTAAGGAATGGCTTATGGAGA 1670
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1463 CGAAAGATCATCTCTTCGAGCTTACTCTGAAGAACAGGCTTAAGGAATGGCTTATGGAGA 1522
Query 1671 AAGTGCTTGAAGGTCGCAACACATTGGATTATGATTCTAAAGGCCTCGGCGTGATCCACC 1730
|||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 1523 AAGTGCTTGAAGGTCGCAACACATTGGATTATGATTCTAAAGGCATCGGTGTGATCCACC 1582
Query 1731 TCTGTGCCAGTCTTGGATACACTTGGTCAGTCCAGCTGTTCTCATTGTCAGGCTTATCGT 1790
||||||||| |||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 1583 TCTGTGCCATTCTTGGATACACTTGGTCGGTCCAGCTGTTCTCCTTGTCAGGCTTATCGT 1642
Query 1791 TGAATTTCCGTGATAAACAAGGGTGGACTGCTCTTCATTGGGCAGCATACTACGGAAGGG 1850
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1643 TGAATTTCCGTGATAAACAAGGCTGGACTGCTCTTCATTGGGCAGCATACTACGGAAGGG 1702
Query 1851 AGAAAATGGTGGCTGCTCTTCTCTCTGCTGGGGCAAGACCGAACCTGGTGACAGACTCGA 1910
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 1703 AGAAAATGGTGGCTGCTCTTCTCTCTGCTGGGGCGAGACCGAACCTAGTGACAGACTCGA 1762
Query 1911 CGAAGGATAATCTTGGTGGATGCATGGCAGCTGATTTGGCACAGCAAAACGGATATGACG 1970
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1763 CGAAGGATAATCTTGGTGGATGCATGGCGGCTGATTTGGCACAGCAAAACGGATATGACG 1822
Query 1971 GTTTAGCTGCTTATCTTGCTGAGAAATGTTTGGTTGCTCAGTTTAGAGACATGAAAATTG 2030
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1823 GTTTAGCTGCTTATCTTGCTGAGAAATGTTTGATTGCTCAGTTTAGAGACATGAAAATTG 1882
Query 2031 CTGGAAACATCACTGGCGATCTGGAGGCTTGCAAGGCAGAGATGTTGAACCAAGGCACTC 2090
|||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1883 CTGGAAACATCAGTGGTGATCTGGAGGCTTGCAAGGCGGAGATGTTGAACCAAGGCACTC 1942
Query 2091 TACCGGAAGATGAGCAGAGTCTCAAGGATGCTCTTGCAGCATACAGAACAGCTGCAGAAG 2150
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1943 TCCCGGAAGATGAGCAGAGTCTCAAGGACGCTCTTGCAGCATACAGAACAGCTGCAGAAG 2002
Query 2151 CAGCGGCTCGGATTCAAGGTGCGTTTAGGGAAAAAGCGCTAAAGGCAGCACGGTCAAGCG 2210
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2003 CAGCGGCTCGGATTCAGGGTGCGTTTAGGGAAAAAGCGCTGAAGGCAGCACGGTCAAGCG 2062
Query 2211 TGATTCAGTTTGCTAACAAAGAAGAAGAGGCCAAGAGCATAATCGCGGCGATGAAGATTC 2270
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2063 TGATTCAGTTTGCTAACAAAGAAGAAGAGGCTAAGAGCATAATCGCGGCGATGAAGATTC 2122
Query 2271 AGAATGCGTTCCGGAAATATGATACACGTAGGAAGATAGAAGCCGCTTACCGGATTCAAT 2330
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2123 AGAATGCGTTCCGGAAATATGATACGCGTAGGAAGATAGAAGCCGCTTACCGGATTCAAT 2182
Query 2331 GCAGGTTCCAAACTTGGAAAATACGAAGAGAGTATCTGAACATGCGGCGCCAAGCAATTA 2390
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2183 GCAGGTTCCAAACTTGGAAAATACGAAGAGAGTATCTGAACATGCGGCGTCAAGCAATTA 2242
Query 2391 GGATCCAGGCTGCTTTCAGGGGATTACAAGCAAGGAGGCAGTACAAGAAGATATTGTGGT 2450
|||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 2243 GGATTCAGGCTGCTTTCAGGGGATTACAAGCAAGGAGGCAGTACAAGAAGATTTTATGGT 2302
Query 2451 CGGTAGGAGTATTGGAGAAGGCAGTTTTGAGGTGGAGACAAAAGAGAAAAGGGTTTAGAG 2510
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2303 CGGTAGGAGTGTTGGAGAAGGCAGTTTTGAGGTGGAGACAAAAGAGAAAAGGTTTTAGAG 2362
Query 2511 GACTCCAGGTTGCAGCAGAGGAGGATTCTCCTGGTGAGGCACAGGAAGATTTCTACAAGA 2570
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2363 GACTCCAGGTTGCAGCAGAGGAGGATTCTTCTGGTGAGGCACAGGAAGATTTCTACAAGA 2422
Query 2571 CAAGCCAGAGACAAGCAGAGGAGAGGCTCGAGAGATCTGTAGTGCGAGTACAAGCCATGT 2630
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 2423 CAAGCCAGAGACAAGCAGAGGAAAGGCTCGAGAGATCTGTAGTGCGAGTCCAAGCCATGT 2482
Query 2631 TCAGGTCTAAGAAGGCTCAACAGGATTACAGAAGGATGAAACTCACTCATGAAGAAGCTC 2690
|||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 2483 TCAGGTCTAAGAAGGCTCAAGAGGATTACAGAAGGATGAAACTGACTCATGAAGAAGCTC 2542
Query 2691 AGTTGGAGTACGGTTGCCTGGAAGATATTTGA 2722
|||||||||||| |||||| ||||| ||||||
Sbjct 2543 AGTTGGAGTACGATTGCCTTGAAGACATTTGA 2574
Score = 832 bits (450), Expect = 0.0
Identities = 504/531 (95%), Gaps = 0/531 (0%)
Strand=Plus/Plus
Query 185 ATGGACGGCGACGGTTTAGGCAGACTAATCGGCTCGGAGATTCATGGATTCCATACCTTA 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGACGGCGACGGTTTAGGCAGACTAATCGGCTCGGAGATTCATGGATTCCATACCTTA 60
Query 245 CAAGATCTTGATGTACAGACAATGTTGGAGGAAGCAAAAAGCAGGTGGCTACGGCCAAAC 304
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 61 CAAGATCTTGATGTCCAGACAATGTTGGAAGAAGCAAAAAGCAGGTGGCTACGGCCAAAC 120
Query 305 GAGATCCATGCAATCCTCTATAACCCGAAATACTTCACTATCAATGTCAAGCCAGTGAAC 364
|||||||||||||||||| |||||| | ||||||||| |||||||||||||| ||||||
Sbjct 121 GAGATCCATGCAATCCTCGCTAACCCTATATACTTCACCATCAATGTCAAGCCGGTGAAC 180
Query 365 TTACCCAATAGTGGCAGAATTATATTATTCGACCGTAAGATGTTGAGGAACTTCAGAAAG 424
|||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 181 TTACCCAATACTGGCAGAATAATATTGTTCGACCGTAAGATGTTGAGGAACTTCAGAAAG 240
Query 425 GATGGTCATAACTGGAAAAAGAAAAAGGATGGAAGGACAGTCAAAGAGGCTCATGAACAC 484
|||||||||||||||||||||||||||||||||||||| || || |||||||||||||||
Sbjct 241 GATGGTCATAACTGGAAAAAGAAAAAGGATGGAAGGACTGTTAAGGAGGCTCATGAACAC 300
Query 485 CTGAAAGTTGGTAACGAGGAAAGGATTCATGTATACTATGCGCATGGTGAAGATAACACT 544
|||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 301 CTGAAAGTTGGTGACGAGGAAAGGATTCATGTATACTATGCGCACGGTGAAGATAACACT 360
Query 545 ACCTTTGTTCGAAGATGTTATTGGTTACTGGATAAGGCTCGAGAGAACATCGTCCTTGTA 604
|||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 361 ACCTTTGTTCGAAGGTGTTATTGGTTACTAGATAAGGCTCGAGAGAACATCGTCCTCGTA 420
Query 605 CATTACCGTGATACACAGGAGGCAGCTACAACATCGGGGGACTCAATCTCTAGTCCAATC 664
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 421 CATTACCGTGATACACAGGAGGCAGTTACAACATCGGGGGACTCAAACTCTAGTCCAATC 480
Query 665 TCCGTCTCGGAACAAACATTCCCTAATCGCGTGGCAGCTGAAGATATTGAT 715
|||||||| || ||| ||||||| |||| |||| |||||||||||||||||
Sbjct 481 TCCGTCTCTGATCAAGCATTCCCAAATCTCGTGACAGCTGAAGATATTGAT 531
> Ahg355148 jgi|Araly1|355148|fgenesh1_pg.C_scaffold_7002321
Length=2772
Score = 1144 bits (619), Expect = 0.0
Identities = 1452/1843 (79%), Gaps = 101/1843 (5%)
Strand=Plus/Plus
Query 910 TGATGCTTTGCTTAACGATGGTCCA-CAAAGTCGA-GAGAGTTTTGGAAGGTGGATGAAT 967
||||||||||||||| | ||| | ||||| | || ||||||||||||||| ||||
Sbjct 933 TGATGCTTTGCTTAATAACGGT-TATGGAAGTC-AGGATAGTTTTGGAAGGTGGGTGAA- 989
Query 968 TC-A-TTTATCAGCGAATCTAATGGCTCAC-TGGAGGATCCTTCCTTTGAACCCATGGT- 1023
| | || || || || ||| ||| || | | || ||||||||| ||||| | | ||
Sbjct 990 -CAACTTCATTAGTGACTCTCCTGGTTC-CGTCGATGATCCTTCCCTTGAA-GC-T-GTA 1044
Query 1024 TAT--GCCTAGGCAGGATCCAT-TAGCTCCT-CAAGCTGTATTTCATTCTCACTCTAACA 1079
||| ||| |||||||| ||| || ||||| | | ||||||||| |||||| ||| |||
Sbjct 1045 TATACACCTGGGCAGGATTCATCTA-CTCCTCCTA-CTGTATTTCCTTCTCATTCTGACA 1102
Query 1080 TACCTGAGCAAGTGTTTAACATAACCGATGTTTCACCTGCTTGGGCCTATTCTTCCGAGA 1139
|||| |||||||| || |||||||| |||||||||||||| |||||||| || | ||||
Sbjct 1103 TACCGGAGCAAGTATTCAACATAACTGATGTTTCACCTGCCTGGGCCTACTCGACAGAGA 1162
Query 1140 AAACTAAGATTCTGGTAACTGGGTTCTTGCATGACAG-TTATCAACATCTCGAAAGATCA 1198
|||| |||||||| |||||||||||||| || ||||| || |||||| | | |||||||
Sbjct 1163 AAACAAAGATTCTTGTAACTGGGTTCTTTCACGACAGCTT-CCAACATTTTGGAAGATCA 1221
Query 1199 AACCT-TTATTGCGTTTGCGGTGACTTTTGTGTC-CCTGCGGAATATCTCCAGGCT-GGA 1255
||||| || ||| | || || || || ||||| || || |||| |||||| | | ||
Sbjct 1222 AACCTCTT-CTGCATATGTGGAGAGTTGCGTGTCACC-GCAGAATTTCTCCA-GATGGGG 1278
Query 1256 GTCTACCGTTGCATCATACCTCCACACTCGCCTGGTATGGTAAACCTCTATCTTAGTG-C 1314
|| || |||||| || | || || || || ||||| | || ||||| ||||| |||| |
Sbjct 1279 GTTTATCGTTGCTTCCTTCCCCCTCAATCTCCTGGGGTTGTGAACCTATATCTGAGTGTC 1338
Query 1315 AGATGGACACAAACCAATCAGCCAAT-GTTTCAGATTCGAACACCG-TGCAGTCCCAG-T 1371
|||||| ||||||| |||||||||| | ||||| ||||||||||| | |||| ||| |
Sbjct 1339 -GATGGAAACAAACCGATCAGCCAATCG-TTCAGCTTCGAACACCGCT-CAGT-TCAGTT 1394
Query 1372 TCTTG-ATAAGACCGTCCCTGAAGACAATCAAGAT-TCCAAATGGGAAGAGTTTGAGTTC 1429
| ||| | ||| || ||||| |||| | | || | | ||| |||||||| ||||| |||
Sbjct 1395 TATTGAAAAAG-CCATCCCTCAAGATGA-CCAGCTATACAAGTGGGAAGAATTTGAATTC 1452
Query 1430 CAAGTTC-GACTTTCTCATCTTCTGTTTACGTCTTCCAACAAACTCAACGTTCTCTCCAG 1488
|||| || ||||| ||||||||||||| || ||||| |||||| ||| | || | | ||
Sbjct 1453 CAAG-TCAGACTTGCTCATCTTCTGTTCACTTCTTCGAACAAAATCAGCATTTTAACAAG 1511
Query 1489 CAAAATCTCACCTCATAACCTGCGAGATGCTAAAAAACTCGCTAGCAAAACAAATCATCT 1548
|||||||||||| ||||||||| ||| ||||| |||||||| |||| || |||||
Sbjct 1512 TAAAATCTCACCTGATAACCTGCTAGAGGCTAAGAAACTCGCCAGCAGGACTTCCCATCT 1571
Query 1549 CTTAAACAGTTGGGCTTATCTAGTCAAGTCCATCCAGGGGAATAAGGTATCGTTTGATCA 1608
|||||| |||||||||||| || | ||||| ||||| | ||| |||| ||||||||||
Sbjct 1572 CTTAAATAGTTGGGCTTATTTAATGAAGTCAATCCAAGCAAATGAGGTGCCGTTTGATCA 1631
Query 1609 AGCGAAAGATCATCTCTTCGAGCTTTCTCTGAAGAACAGGCTTAAGGAATGGCTTATGGA 1668
||||| ||| |||||||| |||||| ||||||| || ||||| || || |||||| ||||
Sbjct 1632 AGCGAGAGACCATCTCTTTGAGCTTACTCTGAAAAATAGGCTGAAAGAGTGGCTTTTGGA 1691
Query 1669 GAAAGTGC-TTGAAGGTCGCAACACAT-TGGATTATGATTCTAAAGGCCTCGGCGTGATC 1726
||| || | | ||| |||||||| | ||| ||||| ||||||||||| || ||||||
Sbjct 1692 GAAGGT-CATCGAAAACCGCAACAC-TAAGGAATATGACTCTAAAGGCCTTGGAGTGATC 1749
Query 1727 CACCTCTGTGCCAGT-CTTGGATACACTTGGTCAGTCCAGCTGTTCTCATTGTCAGGCT- 1784
||||| || ||| || || ||||||||||||||| ||| || ||||||| | || |
Sbjct 1750 CACCTTTGCGCC-GTCCTAGGATACACTTGGTCAATCCTTCTATTCTCATGGGCA-AATA 1807
Query 1785 TATCGTTGAATTTCCGTGATAAACAAGGG-TGGACTGCTCTTCATTGGGCAGCATACTAC 1843
|||||||| ||||||||||||| | |||| |||||||||||||||||||||||||||||
Sbjct 1808 TATCGTTGGATTTCCGTGATAAGC-AGGGTTGGACTGCTCTTCATTGGGCAGCATACTAT 1866
Query 1844 GGAAGGGAGAAAATGGTGGCTGCTCTTCTCTCTGCTGGGGCAAGACCGAACCTGGTGACA 1903
|||||||||||||||||||||||||| || ||||| |||||||| || ||||||||||||
Sbjct 1867 GGAAGGGAGAAAATGGTGGCTGCTCTACTATCTGCCGGGGCAAGGCCAAACCTGGTGACA 1926
Query 1904 GACTCGACGAAGGATAATCTT-GGTGGATGCATGGCAGCTGATTTGGCACAGCA-AAACG 1961
||| |||| ||||| | || | || || |||| |||||||||| |||||||||| ||| |
Sbjct 1927 GACCCGACTAAGGA-ATTCCTCGGCGGCTGCACGGCAGCTGATCTGGCACAGCAGAAA-G 1984
Query 1962 GATATGACGGTTTAGCTGCTTATCTTGCTGAGAAATGT-TTGGTTGCTCAGTTTAGAG-A 2019
| |||||||||||||| |||| |||||||||||||||| || | || ||||| | || |
Sbjct 1985 GTTATGACGGTTTAGCAGCTTTTCTTGCTGAGAAATGTCTTC-TAGCACAGTTCA-AGGA 2042
Query 2020 CATGAAAATTGCTGGAAACATCACTGGCGATCTGGAGGCT-TGCAAGGCAGAGATGT--T 2076
|||| |||| ||||||||||||| |||| | || || | | ||||||||||| || |
Sbjct 2043 CATGGAAATGGCTGGAAACATCAGTGGCAAACTTGAAACCAT-CAAGGCAGAGAAGTCAT 2101
Query 2077 -GAA-CCAAGGCACT-CTACCGGAAGATGAGCAGAGTCTCAAGGATGCTCTTGCAGCATA 2133
||| ||| || | | | | | |||| |||||||| || ||||| |||| || |||||
Sbjct 2102 CGAATCCAGGGAA-TGCAAATG-AAGAGGAGCAGAGCCTGAAGGACACTCTGGCGGCATA 2159
Query 2134 CAGAACAGCTGCAGAAGCAGCGGCTCGGATTCAAGGTGCGTTTAGGGAAAAAGCGCT-AA 2192
|||||| |||||||| |||||||| || ||||| || ||||| ||||| | | ||| ||
Sbjct 2160 CAGAACTGCTGCAGAGGCAGCGGCGCGTATTCAGGGAGCGTTCAGGGAGCACGAGCTGAA 2219
Query 2193 AGGCAGCACGGTCAAGCGT-GATTCAG-TTTGCTAACAAAGAAGAAGAGGCCAAGAGCAT 2250
|| || | ||||||| | || || ||||||| ||| |||||||| ||||| | |||
Sbjct 2220 AGTTAG---G-TCAAGCGCCG-TT-AGGTTTGCTAGCAAGGAAGAAGAAGCCAAAAACAT 2273
Query 2251 AATCGCGGCGATGAAGATTCAGAATGCGTTCCGGAAATAT-GATACACGTAGGAAGATAG 2309
||| || ||||||||||||||| | ||||| || || | | || ||||||||||| |
Sbjct 2274 AATTGCCGCGATGAAGATTCAGCACGCGTTTCGCAATT-TCGAGGTTCGTAGGAAGATTG 2332
Query 2310 AAGCCGCTTAC-CGGATTCAATGCAGGTTCCAAACTTGGAAAAT-ACGAAGAGAGTATCT 2367
||| ||| | |||||||| | |||||||||||| |||||||| | | | |||| | |
Sbjct 2333 CAGCTGCTG-CTCGGATTCAGTACAGGTTCCAAACATGGAAAATGAGGCGG-GAGTTTTT 2390
Query 2368 GAACATGCGGCGCCAAG-CAATTAGGATCCAGGCTGC-TTTCAG-GGGATTACAAGCAAG 2424
|||||||||| ||| |||||||||||||||||| ||| || ||| || |||| |||
Sbjct 2391 GAACATGCGGAAT-AAGGCAATTAGGATCCAGGCTGTGTTT-AGAGGG-TTCCAAGTAAG 2447
Query 2425 GAGGCAGTACAAGAAGATATTGTGGTCGGTAGGAGTA-TTGGAGAAGGCAGTTT-TGAGG 2482
|| |||||| |||| ||| |||||||| ||||| ||| ||||||| | || ||||
Sbjct 2448 AAGACAGTACCAGAAAATAACATGGTCGGTGGGAGTTCTTG-AGAAGGC-GATTCTGAGA 2505
Query 2483 TGGAGACAAAAGAGAAAAGGGTTT-AGAGGACTCCAGGTT-G-CAGCA-GAGGAGGATTC 2538
||||||| ||||||||||| ||| ||||| || |||||| | || | |||||| |
Sbjct 2506 TGGAGACTGAAGAGAAAAGG-TTTCAGAGGGCTTCAGGTTAGGCAACCTGAGGAGAAGGA 2564
Query 2539 TCCTGGTGAGGCACAGGAAGATTTCTACAAGACAAGCCAGAGACAAGCAGAGGAGA-GGC 2597
||||||| ||| |||||||||||||||||||||| |||||||||||| | |||
Sbjct 2565 AGGAAGTGAGGCGGTGGAGGATTTCTACAAGACAAGCCAGAAACAAGCAGAGGA-ACGGC 2623
Query 2598 TCGAGAGATCTGTAGTGCGAGTACAAGCCATGTTCAGGTCTAAGAAGGCTCAACAGGATT 2657
||||||| || || || ||| || ||||||||| |||| ||||||||||| || ||||
Sbjct 2624 TCGAGAGGTCAGTGGTTAAAGTCCAGGCCATGTTCCGGTCCAAGAAGGCTCAGCAAGATT 2683
Query 2658 ACAGAAGGATGAAACTCACTCATGAAGAAGCTCAGTTGGAGTA 2700
|||||||||||||||| ||||||||||||||||| |||||||
Sbjct 2684 ACAGAAGGATGAAACTGGCTCATGAAGAAGCTCAGCTGGAGTA 2726
Score = 440 bits (238), Expect = 3e-122
Identities = 364/426 (85%), Gaps = 4/426 (1%)
Strand=Plus/Plus
Query 203 GGCAGACTAATCGGCTCGGAGATTCATGGATTCCATACCTTACAAGATCTTGATGTACAG 262
||||| || |||||||| |||||||||||||||||||| ||||||||||| ||| ||||
Sbjct 19 GGCAGGCTTATCGGCTCTGAGATTCATGGATTCCATACTTTACAAGATCTAGATATACAA 78
Query 263 ACAATGTTGGAGGAAGCAAAAAGCAGGTGGCTACGGCCAAACGAGATCCATGCAATCCTC 322
||||||||||| |||||| | || |||||||| ||||| || ||||||||||| |||||
Sbjct 79 ACAATGTTGGATGAAGCATACAGTAGGTGGCTCCGGCCTAATGAGATCCATGCTCTCCTC 138
Query 323 TATAACCCGAAATACTTCACTATCAATGTCAAGCCAGTGAACTTACCCAATAGTGGCA-G 381
| ||||| |||| |||||| ||||| |||||||| ||||| |||||||| ||||| | |
Sbjct 139 TGTAACCATAAATTCTTCACCATCAACGTCAAGCCTGTGAATTTACCCAAAAGTGGTACG 198
Query 382 AATTATATTATTCGACCGTAAGATGTTGAGGAACTTCAGAAAGGATGGTCATAACTGGAA 441
||| | || || || |||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 199 -ATTGTGTTGTTTGATCGTAAGATGTTGAGAAACTTTAGAAAGGATGGTCATAACTGGAA 257
Query 442 AAAGAAAAAGGATGGAAGGACAGTCAAAGAGGCTCATGAACACCTGAAAGTTGGTAACGA 501
||||||||||||||||| |||| | || || |||||||||||||||||||| ||||| ||
Sbjct 258 AAAGAAAAAGGATGGAAAGACAATTAAGGAAGCTCATGAACACCTGAAAGTCGGTAATGA 317
Query 502 GGAAAGGATTCATGTATACTATGCGCATGGTGAAGATAACACTACCTTTGTTCGAAGATG 561
||||||||||||||| ||||||||||||||||| |||| | |||| ||||| ||||| ||
Sbjct 318 GGAAAGGATTCATGTTTACTATGCGCATGGTGAGGATACCCCTACATTTGTGCGAAGGTG 377
Query 562 TTATTGGTTACTGGATAAGGCTCGAG-AGAACATCGTCCTTGTACATTACCGTGATACAC 620
||| |||||| |||||||| ||| || || |||| || ||||| || || ||||| ||||
Sbjct 378 TTACTGGTTATTGGATAAGTCTC-AGGAGCACATAGTTCTTGTCCACTATCGTGAGACAC 436
Query 621 AGGAGG 626
| ||||
Sbjct 437 ATGAGG 442
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 113927922795
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5