BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G16960.1

Length=345
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg318460 jgi|Araly1|318460|fgenesh1_pm.C_scaffold_3001476           446    6e-125


> Ahg318460 jgi|Araly1|318460|fgenesh1_pm.C_scaffold_3001476
Length=351

 Score =  446 bits (241),  Expect = 6e-125
 Identities = 306/337 (91%), Gaps = 5/337 (1%)
 Strand=Plus/Plus

Query  1    ATGGGTGCTCTAGCAGAACTTGTAGCTCTCATTATCGTTATGTGTGCAAGTGTAACAATG  60
            |||||| ||||||| ||||||||||||||||| ||| | |||||| ||||||||||||||
Sbjct  1    ATGGGTTCTCTAGCGGAACTTGTAGCTCTCATAATCATAATGTGTACAAGTGTAACAATG  60

Query  61   TCCCTCGCTCAAAACCCCATGGCTTCACCACCAAGTGTTGAGAACCCAAATACAACAGTG  120
            ||||||||||||||||||||||||||||||  |||  |||||||||||||||||||||||
Sbjct  61   TCCCTCGCTCAAAACCCCATGGCTTCACCA--AAGA-TTGAGAACCCAAATACAACAGTG  117

Query  121  GTGATAC-ATAACGCTCTTTCAGGTTATTGGCCAATGGCATACCATTGTGCATCAAAAGA  179
            ||||| | |||||| ||||  ||||| |||||||||| ||||||||||||  |||| |||
Sbjct  118  GTGAT-CTATAACGATCTTGAAGGTTCTTGGCCAATGTCATACCATTGTGTGTCAAGAGA  176

Query  180  CGTTGATTTTGGACTCCGACGTATGCTAGCTGAAAGAGACCAAGAATCTGCAATGTTTGG  239
            ||||||||||||| | || ||||||| | | ||||||||||||||||||||| |||||||
Sbjct  177  CGTTGATTTTGGAATTCGGCGTATGCCATCAGAAAGAGACCAAGAATCTGCAGTGTTTGG  236

Query  240  ATGCAAAAGATGCGAATGGAAGATACGTGAAGAAGGACCTTGCAAACTGAACAAAAAGAC  299
            ||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||| ||
Sbjct  237  ATGCAAAAGATGCGAATGGAAGATACGCGAAGATGGACCTTGCAAACTTAACAAAAAAAC  296

Query  300  TGGAATGTTTGATCTTTGTCCTCCTTGGGATTCTCAA  336
            |||||||||||||||||||||||||||||||||||||
Sbjct  297  TGGAATGTTTGATCTTTGTCCTCCTTGGGATTCTCAA  333



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12247944069


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5