BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G16970.1

Length=423
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg318461 jgi|Araly1|318461|fgenesh1_pm.C_scaffold_3001477           529    7e-150


> Ahg318461 jgi|Araly1|318461|fgenesh1_pm.C_scaffold_3001477
Length=432

 Score =  529 bits (286),  Expect = 7e-150
 Identities = 374/415 (90%), Gaps = 12/415 (3%)
 Strand=Plus/Plus

Query  4    TGTGTTAGTGTAACAATATCTCGAGGCCAAAAGGATAGCATCCCTCCAACTCCAACATCC  63
            ||| ||| ||||||||||||||||| |||||| |||   || | | | | |||| |||||
Sbjct  10   TGTATTAATGTAACAATATCTCGAGCCCAAAATGAT---AT-CAT-C-AGTCCATCATCC  63

Query  64   GGTTTCGACAACCCAAGAACAACAGTGGTGATATACAATGATCTTGGGGGTCATCTGCCA  123
            |||||| ||||| |||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct  64   GGTTTCTACAACTCAAGAACAACAGTGGTGATATATAATGATCTTGGTGGTCATCTGCCA  123

Query  124  TTGAGATACCATTGTAAATCAAAA-AATGATGATCTTGGAGACCGGAATATGGCGGTAAA  182
            ||| |||| ||||||||||||||| || ||||||||||||||||||| ||||||||||||
Sbjct  124  TTGCGATATCATTGTAAATCAAAACAA-GATGATCTTGGAGACCGGACTATGGCGGTAAA  182

Query  183  TGGAACTTGGTCATTTGAATTTAGACCGAGTGTTTTTGGAGGAACTTTGtttttttGCGG  242
            |||||| |||||||||||||||||||| ||| |||||||| ||||||| |||||||||||
Sbjct  183  TGGAACGTGGTCATTTGAATTTAGACCCAGTATTTTTGGAAGAACTTTATTTTTTTGCGG  242

Query  243  TTTTATATGGGATAAGGAGTTGCATTGGTTCGATATCTACAAACAG-AGTAGAGACAGAG  301
            ||||| ||||||||| ||||||||||||||||||||||||| |||| || ||||||| ||
Sbjct  243  TTTTAGATGGGATAATGAGTTGCATTGGTTCGATATCTACACACAGAAG-AGAGACAAAG  301

Query  302  AATTCGCCGAGTTTGGATGTAGAAGATGCGAATGGAAGATACGCAAAGATGGACCTTGCA  361
            ||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  302  AATTCACCAAGTTTGGATGTAGAAGATGCGAATGGAAGATACACAAAGATGGACCTTGCA  361

Query  362  AA-TTGAACAAGAACAGTAATATGTTTGATGTTTGTCTTCCTTGGAATTCTCAAT  415
            || || ||||| |||| ||| ||||||||||||||||||||||||||||||||||
Sbjct  362  AACTT-AACAAAAACACTAAAATGTTTGATGTTTGTCTTCCTTGGAATTCTCAAT  415



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15224080011


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5