BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G16980.1
Length=563
Score E
Sequences producing significant alignments: (Bits) Value
Ahg318462 jgi|Araly1|318462|fgenesh1_pm.C_scaffold_3001478 536 6e-152
Ahg493259 jgi|Araly1|493259|fgenesh2_kg.7__2692__AT4G16265.1 366 8e-101
> Ahg318462 jgi|Araly1|318462|fgenesh1_pm.C_scaffold_3001478
Length=345
Score = 536 bits (290), Expect = 6e-152
Identities = 326/344 (95%), Gaps = 0/344 (0%)
Strand=Plus/Plus
Query 91 ATGAGTACTATGAAATTTTGCCGCGAATGTAATAACATTCTGTATCCTAAGGAGGACAAA 150
||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 1 ATGAGTACTATGAAATTTTGCCGTGAATGTAACAACATTCTGTATCCTAAGGAGGACAAG 60
Query 151 GAACAGAAGATCCTCCTCTATGCTTGCCGTAATTGTGATCACCAGGAGGTAGCTGATAAC 210
|| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 61 GAGCAGAAGATCCTCCTCTACGCTTGCCGTAATTGTGATCACCAGGAAGTAGCTGATAAC 120
Query 211 AGCTGTGTGTACAGAAACGAGGTTCATCACTCTGTAAGTGAGCGAACTCAGATCTTAACA 270
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |
Sbjct 121 AGCTGTGTGTACAGAAACGAGGTTCATCACTCTGTAAGTGAGCGAACTCAAATCCTATCT 180
Query 271 GACGTGGCTTCTGACCCTACTCTTCCCCGAACCAAGGCTGTGCGTTGCTCTAAGTGTCAG 330
||||| ||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 181 GACGTCGCTTCTGACCCAACTCTTCCCCGAACCAAGGCTGTGCGTTGCGCTAAGTGTCAG 240
Query 331 CATAGGGAGGCCGTTTTCTTCCAGGCTACGGCTAGAGGTGAAGAAGGAATGACACTGTTC 390
||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 241 CATAGCGAGGCCGTCTTCTTCCAGGCTACGGCTAGAGGCGAAGAAGGAATGACACTGTTC 300
Query 391 TTTGTCTGTTGCAACCCGAATTGTGGTCATCGCTGGAGAGAATA 434
|||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 301 TTTGTCTGCTGCAACCCGAATAGTGGTCATCGCTGGAGAGAATA 344
> Ahg493259 jgi|Araly1|493259|fgenesh2_kg.7__2692__AT4G16265.1
Length=598
Score = 366 bits (198), Expect = 8e-101
Identities = 309/362 (85%), Gaps = 10/362 (3%)
Strand=Plus/Plus
Query 78 AGATTCAGCTAAGATGAGTACTATGAAATTTTGCCGCGAATGTAATAACATTCTGTATCC 137
|||||| || ||||||||||||||||||||||| || ||||||||||||||||| |||||
Sbjct 94 AGATTCTGCGAAGATGAGTACTATGAAATTTTGTCGTGAATGTAATAACATTCTATATCC 153
Query 138 TAAGGAGGACAAAGAAC-AGAAGATCCTCCTCTATGCTTGCCGTAATTGTGATCACCAGG 196
|||||| ||||| || | | | |||||||||||||| || |||||||||||||||||||
Sbjct 154 TAAGGAAGACAAGGAGCAATCA-ATCCTCCTCTATGCGTGTCGTAATTGTGATCACCAGG 212
Query 197 AGGTAGCTGATAACAGCTGTGTGTACAGAAACGAGGTTCATCACTCTGTAAGTGAGCGAA 256
| | ||| ||||||| |||||| |||||||||||||||||||||||||||||||| | ||
Sbjct 213 AAGCAGCGGATAACAACTGTGTTTACAGAAACGAGGTTCATCACTCTGTAAGTGAACAAA 272
Query 257 CTCAGATCTTAACAGACGTGGCTTCTGACCCTACTCTTCCCCGAACCAAGGCTGTGCG-T 315
|||| ||| || | ||||| ||||||||||| |||||||| || |||||||| ||||| |
Sbjct 273 CTCAAATCCTATCCGACGTTGCTTCTGACCCAACTCTTCCACGTACCAAGGCAGTGCGGT 332
Query 316 -TGCTCTAAGTGTCAGCATAGG-GAGGCCGTTTTCTTCCAGGCTACGGCTAGAGGTGAAG 373
||| | |||||||| || || || || || ||||||||||| || |||||||| ||||
Sbjct 333 GTGC-C-AAGTGTCAACAC-GGCGAAGCTGTCTTCTTCCAGGCCACTGCTAGAGGCGAAG 389
Query 374 AAGGAATGACACTGTTCTTT-GTCTGTTGCAACCCGAATTGTGGTCATCGCTGGAGAGAA 432
|||||||||| ||||| ||| || || ||||||||||| ||| |||| || |||||||||
Sbjct 390 AAGGAATGACTCTGTT-TTTCGTTTGCTGCAACCCGAACTGTAGTCACCGTTGGAGAGAA 448
Query 433 TA 434
||
Sbjct 449 TA 450
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20565862471
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5