BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G16990.1
Length=836
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479167 jgi|Araly1|479167|fgenesh2_kg.3__1868__AT3G16990.1 1181 0.0
> Ahg479167 jgi|Araly1|479167|fgenesh2_kg.3__1868__AT3G16990.1
Length=789
Score = 1181 bits (639), Expect = 0.0
Identities = 742/792 (94%), Gaps = 6/792 (1%)
Strand=Plus/Plus
Query 46 AAAGGAAGAAGAAGCAATTTCAATGGAGAAGAGAGGGGTGATCGACACATGGATTGATAA 105
||||||||||| |||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 1 AAAGGAAGAAGCAGCAATTTCAATGGAGAAGAGAGGAATGATCGACACGTGGATTGATAA 60
Query 106 GCACCGTTCGATCTATACGGCGGCTACACGTCATGCTTTTGTCGTCTCGATCCGTGACGG 165
|||||||||||||||| ||||||| ||||| ||||||||||||||||||||||| |||||
Sbjct 61 GCACCGTTCGATCTATTCGGCGGCGACACGCCATGCTTTTGTCGTCTCGATCCGCGACGG 120
Query 166 ATCCGTTGATCTCTCGTCCTTCAGAACTTGGCTGGGGCAAGATTATCTGTTCGTGAGGAG 225
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 121 ATCCGTCGATCTCTCGTCCTTCAGAACTTGGCTGGGGCAAGATTATCTGTTCGTGAGG-G 179
Query 226 G-TTTGTGCCGTTTGTAGCGAGTGTGTTGATCAGAGCTTGCAAAGATTCCGGCGAGAGTT 284
| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 180 GATTTGTGCCGTTTGTAGCGAGTGTGCTGATCAGAGCTTGCAAAGATTCCGGCGAGAGTT 239
Query 285 CCGATATGGAAGTGGTGCTTGGTGGTATAGCATCGTTGAATGATGAAATAGAATGGTTTA 344
|||||||||||||||||||||||||| | || ||||||||||| ||||| ||||||||||
Sbjct 240 CCGATATGGAAGTGGTGCTTGGTGGTTTGGCGTCGTTGAATGACGAAATTGAATGGTTTA 299
Query 345 AAAGAGAAGGATCGAAATGGGATGTTGATTTCTCGACCGTTGTGCCTCAAAGA-GCTAAT 403
||||||||||| ||||||||||||| |||||||| || ||||||||||||| | ||||||
Sbjct 300 AAAGAGAAGGAACGAAATGGGATGTGGATTTCTCCACTGTTGTGCCTCAAA-ATGCTAAT 358
Query 404 CAAGAATATGGCAGGTTTTTGGAAGATCTGATGAGCAGTGAGGTGAAGTATCCGGTGATT 463
||||||||| ||||||||||||| | ||||||||||||||||||||||||| | ||||||
Sbjct 359 CAAGAATATCGCAGGTTTTTGGATGCTCTGATGAGCAGTGAGGTGAAGTATGCAGTGATT 418
Query 464 ATGACAGCTTTCTGGGCAATTGAAGCAGTGTATCAAGAGAGCTTTGCTCATTGTTTAGAA 523
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 419 ATGACAGCTTTCTGGGCAATTGAAGCAGTGTACCAAGAGAGTTTTGCTCATTGTTTAGAA 478
Query 524 GACGGGAACAAAACTCCGGTGGAGCTTACCGGTGCTTGTCATCGTTGGGGGAATGACGGG 583
|||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||
Sbjct 479 GACGGGAACAAAACTCCGGTGGAGCTTACCGGAGCTTGTCATCGGTGGGGCAATGACGGG 538
Query 584 TTTAAACAGTATTGTTCGTCTGTCAAGAACATTGCCGAACGTTGTCTGGAGAATGCCTCC 643
|||||||||||||| || |||||||||||||| ||||||||||| ||||||||||| |||
Sbjct 539 TTTAAACAGTATTGCTCATCTGTCAAGAACATCGCCGAACGTTGCCTGGAGAATGCATCC 598
Query 644 GGTGAGGTGCTCGGTGAAGCTGAAGATGTACTTGTACGAGTTCTTGAACTA-GAGGTTGC 702
|| |||||||||| ||||||||||||||||||||||||||||||||||| | ||||| ||
Sbjct 599 GGAGAGGTGCTCGTTGAAGCTGAAGATGTACTTGTACGAGTTCTTGAAC-ACGAGGTCGC 657
Query 703 CTTCTGGGAGATGAGCCGTGGAGGACAGTAGCTAATGTTTGGGTTTGAATTTCTCATTTC 762
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 658 CTTCTGGGAGATGAGCCGTGGAGGACAGTAACTAATGTTTGGGTTTGAGTTTCTCATTTC 717
Query 763 CTCTAAATGCCAAAGAGAAACAAGTTCCAATCTTTATGTTTGGTGAAACACAAGTTGAGA 822
|||||||| |||| |||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 718 CTCTAAATTCCAATGAGAAACAAGTTTCAATCTTTATGTTTGGTGAAAAACAAGTTGAGA 777
Query 823 TTATGGTTTCAT 834
||||| ||||||
Sbjct 778 TTATGATTTCAT 789
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30917685687
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5