BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G17000.1
Length=1263
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479168 jgi|Araly1|479168|fgenesh2_kg.3__1869__AT3G17000.1 1696 0.0
Ahg946645 jgi|Araly1|946645|scaffold_702874.1 647 0.0
Ahg897920 jgi|Araly1|897920|Al_scaffold_0005_1886 139 4e-32
> Ahg479168 jgi|Araly1|479168|fgenesh2_kg.3__1869__AT3G17000.1
Length=1211
Score = 1696 bits (918), Expect = 0.0
Identities = 1125/1224 (92%), Gaps = 18/1224 (1%)
Strand=Plus/Plus
Query 23 TTTGTGTATTTATTATTTTCTGTT-AAGACGAATCGGACAGAGAGAACTCCGGCGGCGGA 81
|||||||||||||||||||||||| |||||||||||| | ||| | ||| |||||||| |
Sbjct 1 TTTGTGTATTTATTATTTTCTGTTAAAGACGAATCGGGCCGAGCGGACTGCGGCGGCGAA 60
Query 82 TTGCACTTCCGGCAAGATCTCGTGGGGATAAATAAGATGGCGGATGAGAGGTATAATCGG 141
||||| |||||||||||||| | |||| ||||||||||||||||||||||||| |||
Sbjct 61 TTGCATTTCCGGCAAGATCTGGCGGGG----ATAAGATGGCGGATGAGAGGTATAACCGG 116
Query 142 AAGAATCCGGCGGTGAAGAGGATTTTGCAGGAGGTTAAGGAGATGCAAGCTAATCCGTCT 201
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 117 AAGAATCCGGCGGTGAAGAGGATTTTGCAGGAGGTTAAGGAGATGCAAGCAAATCCGTCT 176
Query 202 GATGATTTTATGTCTCTTCCTCTTGAGGAGAATATCTTTGAGTGGCAATTCGCCATCCGA 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 GATGATTTTATGTCTCTTCCTCTTGAGGAGAATATCTTTGAGTGGCAATTCGCCATCCGA 236
Query 262 GGTCCTGGTGATACTGAATTCGAGGGCGGGATTTATCATGGGAGAATTCAGTTGCCTGCA 321
||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 237 GGTCCAGGTGACACTGAATTCGAGGGCGGGATTTATCATGGGAGAATTCAGCTGCCTGCA 296
Query 322 GATTATCCATTCAAACCTCCTTCATTCATGTTATTGACCCCTAACGGGCGCTTTGAAACT 381
||||| || ||||||||||||||||||||||||||||| ||||| || |||||||||||
Sbjct 297 GATTACCCTTTCAAACCTCCTTCATTCATGTTATTGACGCCTAATGGTCGCTTTGAAACC 356
Query 382 AACACCAAGATTTGCTTGAGCATTTCAAACTACCACCCTGAGCATTGGCAACCTTCATGG 441
|| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 357 AATACCAAGATTTGCTTGAGCATTTCAAATTACCACCCCGAGCATTGGCAACCTTCATGG 416
Query 442 AGTGTTCGGACTGCTTTGGTGGCTCTCATTGCATTTATGCCCACAAGTCCCAATGGAGCA 501
|||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||
Sbjct 417 AGTGTTCGGACTGCTTTGGTGGCTCTGATTGCATTCATGCCCACAAGTCCCAATGGGGCA 476
Query 502 CTGGGCTCAGTAGATTATCCAAAGGATGAGAGACGTACACTAGCCATTAAATCACGTGAG 561
|||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||
Sbjct 477 CTGGGCTCAGTAGATTATCCAAAGGAGGAGAGACGTACACTAGCAATTAAATCTCGTGAG 536
Query 562 ACACCACCTAAGTATGGCTCTCCTGAACGGCAAAAAATTATTGATGAGATTCATCAGTAC 621
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 537 ACACCACCCAAGTATGGCTCTCCTGAACGGCAAAAAATTATTGATGAGATTCATCACTAC 596
Query 622 ATCCTTAGCAAAGCAACCGTGGTTCCAAAACCTCTTCCTCTGGAATGTAGCCAAGCACCT 681
|||||||||||||||||| | |||||||| ||||||||||||||||||| |||| || ||
Sbjct 597 ATCCTTAGCAAAGCAACCATTGTTCCAAACCCTCTTCCTCTGGAATGTAACCAAACATCT 656
Query 682 TCCATCGTATCAGAAGCTCACTCCCAAGTTGAGCCACAGGAAGCGATAACTGTAGTAGAA 741
|||| | ||||||| ||||||||||||| ||||||||||||| | ||||| ||||| ||
Sbjct 657 TCCACCATATCAGAGGCTCACTCCCAAGCTGAGCCACAGGAATCCATAACAGTAGTGGAG 716
Query 742 GAGCGGTCCATCGCTACAACAGACACCATAGTTGATGATCAAATCATAGAAGAGACAGCT 801
|||| ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 717 GAGCAGTCCATCTCTACAACAGAAACCATAGTTGATGATCAAATCATAGAAGAGACAGCT 776
Query 802 GAAGCAGTCAATACAGCAGCTAGTGTGGTTCCCGCTGCAGCACCTTTACCAGCGGTTGAA 861
|||||||||||||||||||||| ||||||||||||||||||| | ||| |||| ||||||
Sbjct 777 GAAGCAGTCAATACAGCAGCTAATGTGGTTCCCGCTGCAGCAGCGTTAACAGCAGTTGAA 836
Query 862 GTTGTGGTCAAAGCTTCTGTAAGTGGTGAGCAAAGGATGGCCAGAAGAGCGGCTCAGAAG 921
|||| | |||||||||||||||||||||||||| ||||||||||||| |||| ||||||
Sbjct 837 GTTGCAGCCAAAGCTTCTGTAAGTGGTGAGCAAACGATGGCCAGAAGAACGGCACAGAAG 896
Query 922 CCAGTCGATGACAGACTCTTCACGTGGGCGGCGGTTGGGCTCACAATCGCTATCATGGTT 981
|| |||||||||||||| || ||||||||||||||||||||||||||||||||| | |||
Sbjct 897 CCCGTCGATGACAGACTGTTTACGTGGGCGGCGGTTGGGCTCACAATCGCTATCGTAGTT 956
Query 982 CTTCTTCTGAAGAAGTTCATAAAATCAAATGGTTACAGTACTGGGTTTATGGATGATCAG 1041
|||||||||||||||||||||| ||||| |||||| || |||||||||||||| |||
Sbjct 957 CTTCTTCTGAAGAAGTTCATAAGATCAACTGGTTATGGTGCTGGGTTTATGGAT---CAG 1013
Query 1042 TCTTGAACTCTGATGAAAGTCAATGCTGC-G-T-TTAAGAAA-TGGGGTTGTGTTGTTTA 1097
|||||||||||||||| |||||||||||| | | || |||| | ||||||| |||||||
Sbjct 1014 TCTTGAACTCTGATGATAGTCAATGCTGCTGCTATTGGGAAAATAGGGTTGTTTTGTTTA 1073
Query 1098 ATATTTTATAAATATAATTAAAGTGCATAATGGCGTAAATAATTTCTGTGTGACATTGTC 1157
|||||| |||||||| ||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 1074 ATATTT-ATAAATATGATTAAAGTGCATAATGGGGTAAATAATTG-TGTGTGACATTGTC 1131
Query 1158 TTGCAACTTAGTTGATAGATTGGATTATAGCTTGTGACCAAGTTAACAATATGTATTTTG 1217
||||||||||||||||||||| | |||||||||||| |||||||||||||||||||||
Sbjct 1132 TTGCAACTTAGTTGATAGATTC--T-ATAGCTTGTGACGAAGTTAACAATATGTATTTTG 1188
Query 1218 GAATTGAACACTGACGACCGTTTT 1241
||||| ||||||||||||| ||||
Sbjct 1189 GAATTAAACACTGACGACC-TTTT 1211
> Ahg946645 jgi|Araly1|946645|scaffold_702874.1
Length=958
Score = 647 bits (350), Expect = 0.0
Identities = 532/617 (86%), Gaps = 24/617 (4%)
Strand=Plus/Plus
Query 118 ATGGCGGATGAGAGGTATAATC-GGAAGAATCCGGCGGTGAAGAGGATTTTGCAGGAGGT 176
|||||||||||||| | ||| | ||||||| |||||||||||||| ||||||||||||||
Sbjct 21 ATGGCGGATGAGAGATTTAA-CAGGAAGAACCCGGCGGTGAAGAGAATTTTGCAGGAGGT 79
Query 177 TAAGGAGATGCAAGCTAATCCGTCTGATGATTTTATGTCTCTTCCTCTTGAGGAGAATAT 236
||||||||||||||||||||| | ||||||||| ||||||||||| || |||||||||||
Sbjct 80 TAAGGAGATGCAAGCTAATCCTTGTGATGATTTCATGTCTCTTCCCCTCGAGGAGAATAT 139
Query 237 CTTTGAGTGGCAATTCGCCATCCGAGGTCCTG-GTGATACTGAATTCGAGGGCGGGATTT 295
||||||||||||||||| ||||||||||| | |||| |||||||| || || ||||| |
Sbjct 140 ATTTGAGTGGCAATTCGCGATCCGAGGTCC-GAGTGACACTGAATTTGAAGGTGGGATAT 198
Query 296 ATCATGGGAGAATTCAGTTGCCTGCAGATTATCCATTCAAACCTCCTTCATTCATGTTAT 355
|||||||||| |||||||||||||| || ||||| |||||||||||||| ||||||||||
Sbjct 199 ATCATGGGAGGATTCAGTTGCCTGCTGACTATCCTTTCAAACCTCCTTCGTTCATGTTAT 258
Query 356 TGACCCCTAACGGGCGCTTTGAAACTAACACCAAGATTTGCTTGAGCATTTCAAACTACC 415
||||||||| || || |||||||| |||||||||||||||||||||||||| | ||||
Sbjct 259 TGACCCCTAGTGGTCGTTTTGAAACCAACACCAAGATTTGCTTGAGCATTTCTGATTACC 318
Query 416 A-CCCTGAGCATTGGCAACCTTCATGGAGTGTTCGGACTGCTTTGGTGGCTCTCATTGCA 474
| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 319 ATCCC-GAGCATTGGCAACCTTCATGGAGTGTTCGGACTGCTTTGGTGGCTCTCATTGC- 376
Query 475 TTT-ATGCCCACAAGTCCCAATGGAGCACTGGGCTCAGTAGATTATCCAAAGGATGAGAG 533
||| ||||| ||| |||||||||||||| ||||| |||||||| |||||||| |||||
Sbjct 377 TTTCATGCCTTCAAACCCCAATGGAGCACTAGGCTCGGTAGATTACCCAAAGGAGGAGAG 436
Query 534 ACGTACACTAGCCATTAAATCACGTGAGACACCACCTAAGTATGGCTCTCCTGAACGGCA 593
|||| ||||||||| ||||||||| |||||||||| || ||||| |||||||| || ||
Sbjct 437 ACGTGCACTAGCCACTAAATCACGCCAGACACCACCCAAATATGGTTCTCCTGAGCGTCA 496
Query 594 AAAAATTATTGATGAGATTCATCAGTACATCCTTAGCAA-AGCAACCGTG-GTTCCAAAA 651
|||| ||||||||||||||||||||||||| || ||||| | || || | | ||| |||
Sbjct 497 AAAACTTATTGATGAGATTCATCAGTACATGCTCAGCAAGA-CA-CCTTCTGCTCCCAAA 554
Query 652 CCTCT-TCCTCTGGAATGTAGCCAAGCACC-TTC-CATCGTAT-CAGA-AGCTCACTCCC 706
|| | ||||| |||||||| | || |||| || | | | || |||| || ||| ||||
Sbjct 555 CC-CAATCCTCAGGAATGTAACAAAACACCCTTGGC-T-G-ATTCAGACAG-TCAGTCCC 609
Query 707 AAGTTGA-GCCACAGGA 722
||| || |||||||||
Sbjct 610 AAGC-GAAGCCACAGGA 625
> Ahg897920 jgi|Araly1|897920|Al_scaffold_0005_1886
Length=330
Score = 139 bits (75), Expect = 4e-32
Identities = 101/113 (89%), Gaps = 3/113 (3%)
Strand=Plus/Plus
Query 946 TGGGCGGCGGTTGGGCTCACAATCGCTATCATGGTTCTTCTTCTGAAGAAGTTCATAAAA 1005
|||||||||||||||||||||||||||||| | |||||||| |||||||||||||||| |
Sbjct 2 TGGGCGGCGGTTGGGCTCACAATCGCTATCGTAGTTCTTCTCCTGAAGAAGTTCATAAGA 61
Query 1006 TCAAATGGTTACAGTACTGGGTTTATGGATGATCAGTCTTGAACTCTGATGAA 1058
|||| |||||| || |||||||| ||||| ||||||||||||||||||||
Sbjct 62 TCAAGTGGTTATGGTGCTGGGTTTGTGGAT---CAGTCTTGAACTCTGATGAA 111
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47196171246
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5