BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G17010.1
Length=1074
Score E
Sequences producing significant alignments: (Bits) Value
Ahg318465 jgi|Araly1|318465|fgenesh1_pm.C_scaffold_3001481 1214 0.0
Ahg897920 jgi|Araly1|897920|Al_scaffold_0005_1886 257 1e-67
> Ahg318465 jgi|Araly1|318465|fgenesh1_pm.C_scaffold_3001481
Length=909
Score = 1214 bits (657), Expect = 0.0
Identities = 837/921 (91%), Gaps = 24/921 (3%)
Strand=Plus/Plus
Query 1 ATGGGTAAGAGTAGTAACATAGTTTTTGATCGGATTAAAGAAGAACGGCAGATGTTGAGC 60
||||||| ||| || ||||| | ||||||| |||| |||||||||| |||||||||||
Sbjct 1 ATGGGTAGGAGAAGGAACATTGGTTTTGATAAAATTATAGAAGAACGGAAGATGTTGAGC 60
Query 61 TTTTTCAAGATTTTTCAGAGGGCAGATCTATCCTCTGACTGCATGAGAGCGCTTCCTTAC 120
|||||||||||||||||||| |||||||||| ||||| |||||||||||| || |||||
Sbjct 61 TTTTTCAAGATTTTTCAGAGTTCAGATCTATCTTCTGAATGCATGAGAGCGTTTTCTTAC 120
Query 121 AGCTTCATAAGCAAAGTCTCTGA-GAAAGACTTCTCTTACAAGATGGTTATAAGAGCGCA 179
||||||||||| | | |||| | |||||||||||||||||||||||| |||||||||||
Sbjct 121 AGCTTCATAAGTAGACTCTC-AAGGAAAGACTTCTCTTACAAGATGGTGATAAGAGCGCA 179
Query 180 ATGGGGAAAGACATGGGATGTAGAAGTCTCCAAGAACCCGACATACTACTACATTGAGAC 239
|||||||||||||||| || ||||| ||||||||||||||| |||||||||||||||||
Sbjct 180 ATGGGGAAAGACATGGCATCTAGAAATCTCCAAGAACCCGAGATACTACTACATTGAGAG 239
Query 240 GCGTGGATGGGATCTGTTTGTGAGTGACAATGCTTTAGGACAAAACGAGTTCATTACCTT 299
|||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 240 GCGTGGATGGGATCAGTTTGTGAGTGACAATGCTTTAGGAGAAAACGAGTTCATTACCTT 299
Query 300 CACTCACAGAGGAAATATGGTCTTTCATGTCAACATCTACGAGCAGAATGGCT-TAGAGA 358
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 300 CACTCACAGAGGAAATATGGTCTTTCATGTCAACATCTACGAGCAGAATGG-TGTAGAGA 358
Query 359 TGCGTAA-ACCTCGAAAATTCCAGACGATGGGTCCTTCTAGTGGGATCAAGAAAGAAGAA 417
||| | | |||||||||||||||||| |||| | |||||||||||||||||||||||| |
Sbjct 359 TGC-TCACACCTCGAAAATTCCAGACAATGGATTCTTCTAGTGGGATCAAGAAAGAAGGA 417
Query 418 GGAGAGAACAGCCTCATAGATGTGAAGAAGGAAGAGGAAAGTGATGAATCTC-CGGGACG 476
| |||| | || ||| ||||||||||||||||||||||| ||||||||| | |||||||
Sbjct 418 G-AGAGTA--GCTTCAAAGATGTGAAGAAGGAAGAGGAAACTGATGAATC-CGCGGGACG 473
Query 477 AGCTGAGTTCCTAGTTAGAAAGAAGAAGACTGAGGATTCCAAATCATcaaagaagaagat 536
|||||||||| |||||||||||| |||||||||||| ||||||||||| |||||||||||
Sbjct 474 AGCTGAGTTCGTAGTTAGAAAGAGGAAGACTGAGGAATCCAAATCATCCAAGAAGAAGAT 533
Query 537 g-acgagaaacaaagtgaagaag-aagagcaagagcaagagcaa-gcaagTGCTGGATGG 593
| | |||||| ||| ||||| | ||||||||||| |||||||| | |||||||| ||||
Sbjct 534 GGA-GAGAAAGAAAAAGAAGA-GCAAGAGCAAGAGTAAGAGCAAAG-AAGTGCTGAATGG 590
Query 594 TGTTCCAGAGTTCAAAATCACCATAAGGAAATCATACCTCAAGTTCCTGGCAATACCAAA 653
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 591 TGTTCCAGAATTCAAAATCACCATAAGGAAATCATACCTCAAGTTCCTGGCAATCCCAAA 650
Query 654 ACATTTTGTGGATGATCATATCCCGAATAAGTCTAAGATTTTCACGATTCGTCACCCGAA 713
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 651 ACATTTTGTGGATGATCATATCCCGAATAAGTCTAAGTTTTTCACGGTTCGTCACCCGAA 710
Query 714 TGG--T-GGTTCATGGAAGGTGCTTTGCTTGGTGAGGGAGATTCGGACAATCTTCTCAGG 770
||| | ||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 711 TGGGATTGGTTCATGGAAGGTGCTCTGCTTGGTGAGGGAGATTAGGACAATCTTCTCAGG 770
Query 771 TGGATACTCGAAATTGGCAAGAGAGT-TCCCTTTGATGGTTGGTGACAAATGCACCTTTA 829
||||||||| |||||||||||||||| ||| ||| ||||||||||||||||||||||| |
Sbjct 771 TGGATACTCAAAATTGGCAAGAGAGTATCC-TTTAATGGTTGGTGACAAATGCACCTTCA 829
Query 830 AGCTTATCAAACCCTTCGAGTTTGTCCTTCTTACCTCCAAGAAGAACAGAGA-GAAGATG 888
|||| |||||||||||||||||||||||||||||||||||||||| |||||| || |||
Sbjct 830 AGCTCATCAAACCCTTCGAGTTTGTCCTTCTTACCTCCAAGAAGACCAGAGATGA-GATT 888
Query 889 GATCAGTGCATGATCGATTGA 909
||||| | |||||||||||||
Sbjct 889 GATCACTACATGATCGATTGA 909
> Ahg897920 jgi|Araly1|897920|Al_scaffold_0005_1886
Length=330
Score = 257 bits (139), Expect = 1e-67
Identities = 176/194 (91%), Gaps = 2/194 (1%)
Strand=Plus/Plus
Query 717 TGGTTCATGGAAGGTGCTTTGCTTGGTGAGGGAGATTCGGACAATCTTCTCAGGTGGATA 776
||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||
Sbjct 138 TGGTTCATGGAAGGTGCTTTGCTTGGTGAGGGAGAATCAGACAACCTTCTCAGGTGGATA 197
Query 777 CTCGAAATTGGCAAGAGAGT-TCCCTTTGATGGTTGGTGACAAATGCACCTTTAAGCTTA 835
|| |||||||||||||||| ||| ||| ||||||||||||||||||||||| ||||| |
Sbjct 198 TTCTAAATTGGCAAGAGAGTATCC-TTTAATGGTTGGTGACAAATGCACCTTCAAGCTCA 256
Query 836 TCAAACCCTTCGAGTTTGTCCTTCTTACCTCCAAGAAGAACAGAGAGAAGATGGATCAGT 895
|||||||||| ||||| |||||||||||||||||||||| ||||||| | || ||||| |
Sbjct 257 TCAAACCCTTAGAGTTCGTCCTTCTTACCTCCAAGAAGACCAGAGAGGACATCGATCACT 316
Query 896 GCATGATCGATTGA 909
|||||||||||||
Sbjct 317 ACATGATCGATTGA 330
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39990939933
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5