BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G17020.1
Length=778
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929544 jgi|Araly1|929544|scaffold_302001.1 821 0.0
> Ahg929544 jgi|Araly1|929544|scaffold_302001.1
Length=537
Score = 821 bits (444), Expect = 0.0
Identities = 496/522 (95%), Gaps = 0/522 (0%)
Strand=Plus/Plus
Query 85 AGAGAGAGTTATGGCGGAGAGTGGTGGACGAAGGATCGGAGTGGCGGTGGATTTCTCGGA 144
|||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 16 AGAGTGAGTTATGGCGGAGAGTGGTGGACGGAGAATCGGAGTGGCGGTGGATTTCTCGGA 75
Query 145 CTGCAGTAAGAAGGCTCTGAGCTGGGCGATCGATAACGTGGTTCGCGACGGAGATCATCT 204
|| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 76 GTGTAGCAAGAAGGCTCTGAGCTGGGCGATCGATAACGTGGTTCGCGACGGAGATCATCT 135
Query 205 GATCCTAATCACTATTGCTCACGATATGAATTACGAGGAAGGCGAGATGCAGCTCTGGGA 264
||||||||||| || |||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 136 AATCCTAATCACCATCGCTCACGATATGAATTACGAGGAAGGAGAGATGCAGCTATGGGA 195
Query 265 GACCGTTGGATCACCTTTTATTCCTATGAGTGAATTCTCTGACGCTGCTGTGATGAAAAA 324
||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| ||
Sbjct 196 GACCGTTGGATCACCTTTTATTCCTCTGAGTGAATTCTCTGATGCTGCTGTGATGAAGAA 255
Query 325 GTATGCATTGAAGCCAGATGCTGAAACCCTTGACATTGTCAATACTGCCGCTAGGAAGAA 384
||||||| ||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 256 GTATGCAGTGAAGCCAGATGCTGAAACTCTTGACATTGTCAACACTGCCGCTAGGAAGAA 315
Query 385 AACGATTACAGTAGTGATGAAGATATATTGGGGAGATCCTCGTGAGAAGATTTGTGCAGC 444
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 316 AACGGTTACAGTAGTGATGAAGATATATTGGGGAGATCCTCGTGAGAAGATTTGTGCAGC 375
Query 445 AGCTGAACAGATTCCTCTCTCAAGCCTTGTGATGGGTAACAGAGGCCTTGGTGGTCTTAA 504
|||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||
Sbjct 376 AGCTGAACAGATTCCTCTTTCAAGCCTTGTGATGGGTAACCGAGGCCTCGGTGGTCTTAA 435
Query 505 GAGGATGATTATGGGAAGTGTAAGCAACCATGTTGTCAACAACGTTGCATGCCCTGTGAC 564
||||||||||||||||||||||||||||||||| || |||||||||| ||||||||||||
Sbjct 436 GAGGATGATTATGGGAAGTGTAAGCAACCATGTGGTGAACAACGTTGTATGCCCTGTGAC 495
Query 565 CGTTGTCAAGGCTCACATCTGAGTTTGCTCGGAGAACTCTAA 606
||||||||||||||||| |||||||||||||| |||||||||
Sbjct 496 CGTTGTCAAGGCTCACACCTGAGTTTGCTCGGGGAACTCTAA 537
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28706556501
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5