BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G17040.1
Length=2144
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479172 jgi|Araly1|479172|fgenesh2_kg.3__1873__AT3G17040.1 3232 0.0
> Ahg479172 jgi|Araly1|479172|fgenesh2_kg.3__1873__AT3G17040.1
Length=2050
Score = 3232 bits (1750), Expect = 0.0
Identities = 1954/2053 (95%), Gaps = 11/2053 (1%)
Strand=Plus/Plus
Query 32 AAAGCTCACAAACGGTTTTATCAGTTAAAGCTTTTTTAAACAATGCACTTCTTCTTCGTG 91
|||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||
Sbjct 1 AAAGCTCACAAACGGTTTTATCAGTTAACGCTTTTCTGAACAATGCACTTCTTCTTCGTG 60
Query 92 CCGAATTCTTCGTCTTCATCTCCTTCTCCGGCCAATACTTCTTCATTCTCGCTATCGTTT 151
|||| ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 61 CCGACTTCTTCGTCTTCATCTCCTTCTCCGGCCAATACTTCTTCATTCTCTCTATTGTTT 120
Query 152 CTCACT-C--CTCAAATTCCTGAGAATCTCTGTAAGTCACCGACGAAAATCCACATCGGA 208
||| || | ||||||||||||||||||||||||| |||||| |||| ||||| ||||||
Sbjct 121 CTCGCTCCTTCTCAAATTCCTGAGAATCTCTGTAAATCACCGGCGAAGATCCATATCGGA 180
Query 209 ACTCATGGAATCTCCGGTCAATCGTTTCTCAGTCATCCTACTTTCTCATCTAAGAACACG 268
|||||||||||||||||| |||||||||||| |||||||| ||||||||||||||||||
Sbjct 181 ACTCATGGAATCTCCGGTAAATCGTTTCTCACACATCCTACGTTCTCATCTAAGAACACG 240
Query 269 TATCTGTATGCAGTCGTCGACAGGTCTTCTTCAGGTGTATTTTCGCCGCAAAAGGAATCT 328
| ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 241 TCTCTGTATGCAGTCGTCGACAGGTCTTCTTCAGGTGTATTTTCGTCGCAAAATGAATCT 300
Query 329 GCCAATGGCGAGGGAGAGGAATCTAACACGGAGGAGGGAGTATTAGTAGTTCGACGGCCG 388
||||||||||| |||| |||||||||||| | |||||| ||||||||||||||||||||
Sbjct 301 GCCAATGGCGAAGGAGGGGAATCTAACAC--A-GAGGGATTATTAGTAGTTCGACGGCCG 357
Query 389 TTGTTGGAGAATTCCGATAAGGAATCTAGTGAGGAAGAGGGAAAAAAGTATCCAGCGAGG 448
| |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 358 TCGTTGGAGAATTCTGATAAGGAATCTAGTGAGGAAGAGGCAAAAAAGTATCCAGCGAGG 417
Query 449 ATCGATGCTGGTCTGAGTAATATAGCTAAGAAGATGCCGATATTTGAGCCGGAGAGATCG 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 ATCGATGCTGGTCTGAGTAATATAGCTAAGAAGATGCCGATATTTGAGCCGGAGAGATCG 477
Query 509 GAATCGTCGTCGTC-ATCTTCAGCCGCTGCTGCTGCAAGAGCTCAAGAGAGACCGCTTGC 567
|| ||||| ||||| | | || ||||| ||||||||||| ||||||||||| ||||||||
Sbjct 478 GAGTCGTCATCGTCGA-CGTCCGCCGCCGCTGCTGCAAGGGCTCAAGAGAGGCCGCTTGC 536
Query 568 GGTGAATTTGGACTTGTCTCTGTACAAAGCAAAGGTTTTGGCGAGAAATTTCAGATACAA 627
|||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 537 CGTGAATTTGGACTTATCTCTGTACAAAGCAAAGGTTTTGGCGAGGAATTTCAGATACAA 596
Query 628 AGACGCCGAGAAGATTCTAGAGAAGTGCATAGCTTACTGGCCGGAGGATGGGAGACCGTA 687
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 597 AGACGCCGAGAAGATTCTGGAGAAGTGCATAGCTTACTGGCCGGAGGATGGGAGACCGTA 656
Query 688 CGTGGCATTGGGGAAGATACTAAGCAAACAATCCAAGTTAGCTGAAGCTCGAATCCTGTA 747
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 657 CGTGGCATTGGGGAAGATACTAAGCAAACAATCCAAGTTAGCCGAAGCTCGAATCGTGTA 716
Query 748 TGAAAAAGGGTGTCAATCTACACAAGGAGAGAATTCATACATTTGGCAGTGTTGGGCTGT 807
||| || ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 717 TGAGAATGGGTGTCAATCTACACAAGGAGAGAATGCATACATTTGGCAGTGTTGGGCTGT 776
Query 808 CCTGGAAAACAGGTTGGGAAATGTAAGAAGAGCCAGGGAGTTGTTTGATGCAGCCACGGT 867
|||||||||||| ||||||||||||||||||||||| || |||||||||||||| |||||
Sbjct 777 CCTGGAAAACAGATTGGGAAATGTAAGAAGAGCCAGAGAATTGTTTGATGCAGCTACGGT 836
Query 868 GGCTGACAAGAAGCATGTAGCAGCCTGGCATGGATGGGCAAACCTGGAGATAAAACAAGG 927
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 837 GGCTGACAAGAAGCATGTAGCAGCCTGGCATGGATGGGCAAACTTGGAGATAAAACAAGG 896
Query 928 AAATATAAGTAAAGCAAGGAATCTTCTAGCCAAAGGCCTCAAGTTTTGTGGCAGAAACGA 987
||||||||||||||| |||||||| ||||||||||||||||||||||||||| | |||||
Sbjct 897 AAATATAAGTAAAGCGAGGAATCTGCTAGCCAAAGGCCTCAAGTTTTGTGGCCGTAACGA 956
Query 988 GTATATCTACCAAACACTTGCCTTGTTGGAGGCCAAAGCTGGCCGGTATGAACAGGCAAG 1047
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 957 GTATATCTACCAAACACTTGCCTTGTTGGAGGCCAAAGCTGCCCGGTATGAACAGGCAAG 1016
Query 1048 GTACCTGTTCAAGCAGGCGACTATATGCAATTC-AAGGAGTTGTGCCAGTTGGTTGGCAT 1106
|||||||||||||||||| || ||||||||||| || ||| || ||||||||||||||||
Sbjct 1017 GTACCTGTTCAAGCAGGCCACCATATGCAATTCGAA-GAGCTGCGCCAGTTGGTTGGCAT 1075
Query 1107 GGGCACAGTTGGAAATACAGCAGGAAAGATACCCAGCTGCTAGAAAGCTTTTTGAGAAAG 1166
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1076 GGGCACAGTTGGAGATACAGCAGGAAAGATACCCAGCTGCTAGAAAGCTTTTTGAGAAAG 1135
Query 1167 CTGTCCAGGCAAGCCCCAAGAATAGATTTGCGTGGCACGTATGGGGGGTGTTTGAAGCTG 1226
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1136 CTGTCCAGGCAAGCCCCAAGAATAGGTTTGCGTGGCACGTATGGGGGGTGTTTGAAGCTG 1195
Query 1227 GAGTAGGTAATGTTGAGCGTGGAAGAAAGCTCCTGAAGATAGGTCATGCGCTAAATCCTA 1286
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1196 GAGTAGGTAATGTTGAGCGTGGAAGAAAGCTCTTGAAGATAGGTCATGCGCTAAATCCTA 1255
Query 1287 GAGACCCTGTTCTCCTTCAGTCCCTTGGCTTACTGGAGTACAAACATTCATCTGCTAATC 1346
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1256 GAGACCCTGTTCTCCTTCAGTCTCTTGGCTTACTGGAGTACAAACATTCATCTGCTAATC 1315
Query 1347 TTGCCCGGGCTTTACTAAGGAGAGCATCAGAGCTCGATCCTAGACATCAACCTGTTTGGA 1406
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1316 TTGCCCGGGCTTTACTAAGGAGAGCATCAGAGGTCGATCCTAGACATCAACCTGTTTGGA 1375
Query 1407 TTGCTTGGGGTTGGATGGAATGGAAAGAAGGAAACACAACAACAGCTAGAGAACTTTACC 1466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1376 TTGCTTGGGGTTGGATGGAATGGAAAGAAGGAAACACAACAACAGCTAGAGAACTTTACC 1435
Query 1467 AAAGAGCTCTCTCCATTGATGCAAATACCGAAAGTGCTTCTCGCTGTCTACAGGCGTGGG 1526
|||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||
Sbjct 1436 AAAGAGCTCTCTCCATTGATGCAAATACCGAAAGTGCTGCTCGTTGTCTACAGGCATGGG 1495
Query 1527 GAGTTCTCGAGCAGAGAGCAGGAAACTTATCAGCAGCAAGAAGATTATTCAGATCTTCAT 1586
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1496 GAGTTCTCGAGCAGAGAGCAGGAAACTTATCAGCAGCAAGAAGATTATTTAGATCTTCAT 1555
Query 1587 TGAACATTAACTCACAAAGCTACGTTACATGGATGACATGGGCACAACTTGAGGAAGATC 1646
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1556 TGAACATTAACTCACAAAGCTACGTTACGTGGATGACATGGGCACAACTTGAGGAAGATC 1615
Query 1647 AAGGAGACACCGAACGTGCTGAAGAAATCCGTAACCTCTATTTTCAACAACGCACAGAGG 1706
|||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1616 AAGGAGACTCCGAACGTGCTGAAGAAATCCGTAACCTCTATTTCCAACAACGCACAGAGG 1675
Query 1707 TTGTTGATGATGCTTCGTGGGTCACAGGATTCTTGGATATTATTGACCCGGCTTTAGACA 1766
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1676 TCGTTGATGATGCTTCGTGGGTCACAGGATTCTTGGATATCATTGACCCGGCTTTAGACA 1735
Query 1767 CCGTTAAAAGGCTCTTGAACTTTGGTCAGAACAATGACAACAACAGATTAACTACTACTC 1826
||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 1736 CCGTTAAAAGGCTTTTGAACTTTGGTCAAAACAATGACAACAACAGGTTAACTACTACTC 1795
Query 1827 TTAGAAACATGAATAGAACCAAAGATAGCCAATCCAATCAGCAACCCGAGAGCTCTGCGG 1886
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||| | ||
Sbjct 1796 TTAGAAACATGAATGGAACCAAAGATAGCCAAACCAATCAGCAACCCGAGAGCTCAGTGG 1855
Query 1887 GACGCGAGGACATTGAAACTGGGAGCGGGTTTAACCTCGATGTATTTTTACGCTCGAAGC 1946
|||||||||||| ||||||||||||||| ||||||||||||| ||||||||| |||||
Sbjct 1856 GACGCGAGGACACTGAAACTGGGAGCGGATTTAACCTCGATGCGTTTTTACGCGAGAAGC 1915
Query 1947 TGTCGTTGGATCCTTTGAAGCTGGACGTTAATCTTGATTCTAAGAGGTTAGAGAGATTCA 2006
||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 1916 TGTCGTTGGATCCTTTGAAGCTGGACGTTAACCTTGATTCTAAGAAGTTAGAGAGATTCA 1975
Query 2007 CTAGAGGAAGAATAAATGGTGCTTGAAAAAATAAGAGGG-ATATTTATTGAGGCGGTGTA 2065
||||||| ||||||||||||||||||||||| | ||||| |||||||||||||| |||||
Sbjct 1976 CTAGAGGGAGAATAAATGGTGCTTGAAAAAACATGAGGGGATATTTATTGAGGCAGTGTA 2035
Query 2066 AAGATGAAGGGTC 2078
||||| |||||||
Sbjct 2036 AAGATAAAGGGTC 2048
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80675138910
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5