BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G17050.1
Length=1845
Score E
Sequences producing significant alignments: (Bits) Value
Ahg341841 jgi|Araly1|341841|fgenesh1_pg.C_scaffold_3001604 494 1e-138
> Ahg341841 jgi|Araly1|341841|fgenesh1_pg.C_scaffold_3001604
Length=918
Score = 494 bits (267), Expect = 1e-138
Identities = 546/674 (81%), Gaps = 46/674 (7%)
Strand=Plus/Plus
Query 1 ATGGGGAAAGTATCGTTTGGGTTTTTGGGTTTGATGCTTGTAGTGGTGGTGATTGGGGTT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGGAAAGTATCGTTTGGGTTTTTGGGTTTGATGCTTGTAGTGGTGGTGATTGGGGTT 60
Query 61 GTGGAGTGTAGGAGATTTGAGAAGGAGACGTTAGGAggtggtggtggtggtggacttggc 120
|||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 61 GTGGAGAGTAGGAGGTTTGAGAAGGAGACGTTAGGAGGTGGTGGTGGTGG---ACTTGGC 117
Query 121 ggtggctttggtggtgggaaaggttttgggggaggaattggtgccgggggaggttttggt 180
||||||||||||||||||||||||||||| ||||||||||||| ||| |||||| |||
Sbjct 118 GGTGGCTTTGGTGGTGGGAAAGGTTTTGGCGGAGGAATTGGTGGCGGTGGAGGTGCCGGT 177
Query 181 ggtggtgcaggaggaggtgccggtggtggtttaggaggaggcgccggtggaggaggaggt 240
|| ||| || || ||| ||||| || | | | || | | | |||||| ||
Sbjct 178 GGAGGTTTTGGTGGTGGTATAGGTGGAGGCC-ATG-GT-GGTG--GTTT-AGGAGGTGGC 231
Query 241 attggtggtggtgca-ggaggaggtgccggtggtggtt-t--aggaggaggtgctggtgg 296
|||||||| || || || |||||| ||||||||| | |||||||||| ||||||
Sbjct 232 ATTGGTGGAGGC-CACGGTGGAGGTATTGGTGGTGGTGCTGGAGGAGGAGGTATTGGTGG 290
Query 297 agga-ctcggaggaggt-catggtggaggtattggtggtggtgctggaggaggtgctggt 354
|| || ||||||||| | |||||||||||||||||||||||| |||||||||||||||
Sbjct 291 TGGTGCT-GGAGGAGGTGC-TGGTGGAGGTATTGGTGGTGGTGCCGGAGGAGGTGCTGGT 348
Query 355 ggaggactaggaggaggC-CACggtgggggtattggtggtggtgccggaggaggt----- 408
|| || ||||||||||| | ||||| |||| |||||||||||| |||||||||
Sbjct 349 GGTGGTCTAGGAGGAGGTGCT-GGTGGAGGTAGTGGTGGTGGTGCAGGAGGAGGTGGAGG 407
Query 409 tct-ggtggaggacttggaggaggtattggtggtggtgccggtggtggtgccggaggagg 467
||| || ||||| | || ||||||||||||||||||||||| || ||||| || |||||
Sbjct 408 TCTAGGAGGAGGCCACGGCGGAGGTATTGGTGGTGGTGCCGGAGGAGGTGCTGGTGGAGG 467
Query 468 --t-ggaggac-t--tggaggaggtcatggtggaggtattggtggtggtgctggaggagg 521
| |||||| | ||| ||||| || || |||||||||||||||||||| ||||||||
Sbjct 468 ACTCGGAGGAGGTGCTGGTGGAGGCCACGGCGGAGGTATTGGTGGTGGTGCCGGAGGAGG 527
Query 522 tgctggtggagg-actgg-ga-ggaggcc--acg-g-t---gg-gg-g-tattggtggtg 568
| |||| ||||| | ||| | || | || | | | | || || | |||||||||||
Sbjct 528 TTCTGGCGGAGGTATTGGTGGTGGTG-CCGGAGGAGGTTCTGGTGGAGGTATTGGTGGTG 586
Query 569 gtgccggaggaggttctggtggaggacttggaggaggtattggtggtggcgcaggaggag 628
|||| ||||||||| | ||||||||| ||||||| ||| |||||| || ||| || |
Sbjct 587 GTGCTGGAGGAGGTGCCGGTGGAGGAATTGGAGGTGGTGCTGGTGGGGGATTAGGCGGCG 646
Query 629 gtgccggtggaggt 642
|||| || ||||||
Sbjct 647 GTGCTGGCGGAGGT 660
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69286155655
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5