BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G17060.1
Length=1356
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479173 jgi|Araly1|479173|fgenesh2_kg.3__1874__AT3G17060.1 2085 0.0
> Ahg479173 jgi|Araly1|479173|fgenesh2_kg.3__1874__AT3G17060.1
Length=1358
Score = 2085 bits (1129), Expect = 0.0
Identities = 1286/1361 (94%), Gaps = 13/1361 (1%)
Strand=Plus/Plus
Query 1 aaaagaaaagtagaaaccccaag-aaaaaataaa-aaa-aaTA-ATGGGTCATCGAACAA 56
||||||||| ||||||||||||| |||||| ||| ||| || | |||| |||| |||||
Sbjct 1 AAAAGAAAACTAGAAACCCCAAGAAAAAAAGAAAGAAAGAA-AGATGGATCATATAACAA 59
Query 57 GAATGATCCTTGTCCTAACCCTAGTTGTAATGTCCATATGGGGTTCGGACGCATCAGCAA 116
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 60 GAATGATCCTTGTCCTAACCCTAGTTGTAATGTCCGTATGGGGTTCGGACGCATCAGCAA 119
Query 117 TGCAAAAGACGAAATTCGACGCCCCACTTTTGACTGAAAAAATCGCGACAAATAGATCGA 176
|||||||||||||||||||||| || ||| | |||||||||||||| |||||||||||||
Sbjct 120 TGCAAAAGACGAAATTCGACGCACCGCTTCTAACTGAAAAAATCGCAACAAATAGATCGA 179
Query 177 TAATTGTAGATATCGAAGGCAAAGGAGACTACACTTCGGTTCAGAAAGCCATCGATGCTG 236
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 180 TAATTGTTGATATCGAAGGCAAAGGAGACTACACTTCGGTTCAAAAAGCCATCGATGCTG 239
Query 237 TCCCTGTTGGTAACTCTAATTGGATTATTGTCCATGTCCGTAAAGGAATCTACAAGGAGA 296
|||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||
Sbjct 240 TCCCTGTTGGTAACTCCAATTGGATCATCGTCCATGTCCGTAAAGGAATCTACAAGGAGA 299
Query 297 GAGTGCACATTCCGGAGAACAAGCCGTTCATATTCATGAGGGGTAATGGAAAAGGAAAAA 356
| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 300 GGGTGCACATTCCGGAGAATAAGCCGTTCATATTCATGAGGGGTAATGGAAAAGGAAAGA 359
Query 357 CGGTGATCGAATCTTCGCAAAGTTCGGTCGACAATGTTGCTTCAGCTACTTTCAAAGTCG 416
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 360 CGGTGATCGAATCTTCGCAAAGTTCGGTTGACAATGTTGCTTCAGCCACTTTCAAAGTCG 419
Query 417 AGGCTAATCACTTTGTCGCTTTTGGTATCAGCATCCGAAATGATGCACCTGTCGGAATGG 476
| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 420 AAGCTAATCACTTTGTCGCTTTTGGTATCAGCATCAGAAATGATGCACCAATCGGAATGG 479
Query 477 CATTCACATCTGAGAACCAATCGGTGGCAGCGTTTGTGGCTGCTGACAAAGTAGCGTTTT 536
||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 480 CATTCACGTCGGAGAACCAATCGGTGGCAGCGTTTGTGGCTGCTGACAAAGTAGCATTTT 539
Query 537 ACCATTGTGCGTTCTACAGCTTACACAACACTTTGTTTGATAACAAAGGTAGACATTACT 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 ACCATTGTGCGTTCTACAGCTTACACAACACTTTGTTTGATAACAAAGGTAGACATTACT 599
Query 597 ACCATGAGTGTTACATCCAAGGCTCCATAGACTTCATCTTCGGTCGCGCAACTTCCATTT 656
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 600 ACCATGAGTGTTACATCCAAGGCTCCATCGACTTCATCTTCGGTCGCGCAACTTCCATTT 659
Query 657 TCAACAATTGTGAGATATTTGTGATATCAGACAAGAGGGTGAAACCGTATGGGTCAATCA 716
|||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||
Sbjct 660 TCAACAATTGTGAGATATTTGTGATATCGGACAAGAGGGTGAAACCGTACGGATCAATCA 719
Query 717 CAGCACACCATAGGGAAAGCGCAGAGGAAAAAACGGGTTACGTGTTCATAAGAGGCAAAG 776
|||||||||||||||||| |||||||||||| || |||||||||||||||||||||||||
Sbjct 720 CAGCACACCATAGGGAAAACGCAGAGGAAAATACTGGTTACGTGTTCATAAGAGGCAAAG 779
Query 777 TGTACGGAATTGATGAGGTTTACTTGGGCCGAGCCAAAGGACCTTATTCTCGAGTCATCT 836
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 780 TGTACGGAATTGATGAGGTTTACTTGGGCCGAGCCAAAGGACCTTATTCCCGAGTCATCT 839
Query 837 TTGCCAAGACTTACTTGTCCAAGACCGTTGTGCCTGATGGTTGGACAAACTGGAGTTACC 896
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 840 TTGCCAAGACTTACTTGTCCAAGACCGTTGTGCCTGATGGTTGGACCAACTGGAGTTACC 899
Query 897 ATGGCTCGACCCAGAATCTATACCATGGGGAGTATAAATGTCATGGACCAGGAGCTGAGA 956
| ||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 ACGGCTCAACCGAGAATTTATACCATGGGGAGTATAAATGTCATGGACCAGGAGCTGAGA 959
Query 957 GGCAAAAGAGATCTGACTGGGCCAAAGATCTTACCAAACAAGAAGTTGAGTCTTTCTTGT 1016
||||||| |||||||| ||||||||||| || || |||||||||||||||||||||||||
Sbjct 960 GGCAAAAAAGATCTGATTGGGCCAAAGAGCTAACTAAACAAGAAGTTGAGTCTTTCTTGT 1019
Query 1017 CCATTGATTTTATTGATGGCACTTCTTGGCTCCCTGTTTGGCTTCAGGAAAAGTTTTAGA 1076
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 1020 CCATTGATTTTATTGATGGCACTTCTTGGCTCCCTGTTTGGCTTCAGCAAAAGTCTTAGA 1079
Query 1077 GTTCCTTATGCTGTCGCGTTTGGCTTTTGACATTTCGCGTTTTGGTGTGGCTTGGaaaaa 1136
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1080 ATTCCTTATGCTGTCGCGTTTGGCTTTTGGCATTTCGCGTTTTGGTGTGGCTTGGAAAAA 1139
Query 1137 aaa--CAT-AT--GAAGAAAGAAGAGTACTTCATCCTTTCTTCGACGGTATACTATACGA 1191
||| || || ||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 1140 AAAAACAACATACGAAGAAAGAAGAGTATTTCATCTTTTCTTCGACGGTATACTATACGA 1199
Query 1192 AATAGTTTTCTCTCttttttttttGTGTACTTCTACTCTAAAATGTTCTTAGAGTGATTG 1251
||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1200 AATAGTTTTCTCT-TATTTTTTTT-TGTACTTCTACTCTAAAATGTTCTTAGAGTGATTG 1257
Query 1252 GAAACTCTTATGTTGTTTGCAAACATTATATAAGATTGTTTCCATCTTAATAATATATGT 1311
|||||||||||| ||||||||||||||||||||||| |||||| | ||||||| ||||||
Sbjct 1258 GAAACTCTTATGCTGTTTGCAAACATTATATAAGATGGTTTCCGTTTTAATAACATATGT 1317
Query 1312 AACCTAAATTT-AAATCCTATAAATTTAAAATATTTTCCCG 1351
|||||||| || ||||| |||||||| ||||||||||||||
Sbjct 1318 AACCTAAAGTTGAAATCATATAAATTAAAAATATTTTCCCG 1358
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50741602527
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5