BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G17070.1
Length=1141
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929548 jgi|Araly1|929548|scaffold_302005.1 1633 0.0
> Ahg929548 jgi|Araly1|929548|scaffold_302005.1
Length=1061
Score = 1633 bits (884), Expect = 0.0
Identities = 1005/1064 (94%), Gaps = 6/1064 (1%)
Strand=Plus/Plus
Query 67 TTCCAAACAAAAGAGAAAGTTATGAAACCAAAGAGCAAAGTTGCAGAATCTACAGCTGCA 126
|||||||||| ||| |||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 1 TTCCAAACAATAGAAAAAGCGATGAAACCAAAGAGCAAAGTTGCAGAATCTGCAGCTGCA 60
Query 127 TCATGTTTTC-TCGTCATGAGCTTGTTATGCAGCTGCATTATTGGTGACCAAATGGAGAC 185
|||||||||| || ||||||||||| ||||||||| ||||| |||||| |||| ||||||
Sbjct 61 TCATGTTTTCTTC-TCATGAGCTTGATATGCAGCTCCATTAATGGTGAGCAAACGGAGAC 119
Query 186 TAATAATGAAGGCTTGTCTTACAGTTACTACGAGAAAACTTGTCCCAAAGTCGAAGAGAT 245
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 120 TAATAATGAAGGCTTATCTTACAGTTACTACGAGAAGACTTGTCCCAAAGTCGAAGAGAT 179
Query 246 AGTGAGATCTTCACTTTCATCAATGTTTATACTTGATCCTACTTCTCCTGCAGCCTTGCT 305
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 180 CGTGAGATCTTCACTTTCATCAATGTTTATACTTGATCCTACTTCTCCGGCAGCCTTGCT 239
Query 306 AAGGCTTATGTTTCATGACTGCCAAGTTCAGGGATGTGACGCATCAATCCTACTCGAGCC 365
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 240 AAGGCTTATGTTTCATGACTGCCAAGTTCAGGGTTGTGACGCATCAATCCTACTCGAACC 299
Query 366 AATTAGAGACCAACAGTTCACCGAGCTTGATTCAGCCAAGAACTTCGGAATCAGAAAGAG 425
|| | | |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 300 AAGTGGGGACCAACAGTTCACTGAGCTTGATTCAGCCAAGAACTTCGGAATCAGAAAGAG 359
Query 426 GGACCTGGTTGGCTCTATCAAAACCTCACTAGAGCTTGAGTGTCCCAAGCAAGTCTCATG 485
||||||| |||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 360 GGACCTGATTGGCTCTATCAAAACCTCACTGGAACTTGAGTGTCCCAAGCAAGTCTCATG 419
Query 486 CTCTGACGTCATCATCCTCGCCGCCAGAGACGCCGTGGCTCTCACGGGAGGCCCACTCAT 545
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 420 CTCCGACGTCATCATCCTCGCCGCCAGAGACGCCGTGGCTCTCACGGGAGGTCCACTCAT 479
Query 546 CTCCGTGCCATTAGGACGAAAAGACTCCCTCTCCACTCCAAGCAAACACGTGGCAGACTC 605
| | ||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||
Sbjct 480 CGCTGTGCCATTAGGACGAAAAGACTCTCTCTCTACTCCAAGCAAACATGTGGCAGACTC 539
Query 606 TGAGCTTCCTCCCTCCACTGCTGACGTTGACACTACCTT-AAGCCTATTCGCTAA-CAAA 663
||||||||||||||||||||||||||| ||||||||||| || ||| || || || ||||
Sbjct 540 TGAGCTTCCTCCCTCCACTGCTGACGTGGACACTACCTTGAA-CCTCTTTGC-AAGCAAA 597
Query 664 GGCATGACCATCGAAGAGTCCGTGGCCATCATGGGTGCACATACGATAGGAGTCACACAT 723
||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 598 GGCATGACCATTGAAGAGTCCGTAGCCATCATGGGTGCGCATACGATAGGAGTCACACAT 657
Query 724 TGCAACAACGTATTATCGCGTTTCGATAACGCAAACGCGACAAGCGAGAACATGGATCCA 783
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 658 TGCAACAACGTATTATCGCGTTTCGATAACGCAAACGCGACAAGTGAGAACATGGATCCA 717
Query 784 CGTTTTCAAACGTTCTTGCGTGTTGCTTGTCCAGAGTTTTCTCCAACTTCTCAAGCTGCG 843
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 718 CGTTTTCAAACGTTTTTGCGTGTGGCTTGTCCAGAGTTTTCTCCAACTTCTCAAGCTGCG 777
Query 844 GAAGCCACATTTGTCCCCAACGATCAAACTTCGGTGATCTTCGATACAGCTTATTACGAT 903
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 778 GAAGCCACATTTGTCCCCAACGATCAAACTTCAGTGATCTTCGATACAGCTTATTACGAT 837
Query 904 GATGCCATCGCGGGACGTGGCAATCTTAGGATTGACTCGGAGATTGGAGCTGATCCACGT 963
||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 838 GATGCAATCGCGGGACGTGGAAATCTTAGAATTGACTCGGAGATTGGAGCTGATCCACGT 897
Query 964 ACACGTCCATTTGTGGAAGCGTTTGCAGCTGATCAAGACCGTTTCTTCAACGCCTTCTCT 1023
|||||||| ||||| ||||||||||| ||||| |||||||| ||||||||||| ||||||
Sbjct 898 ACACGTCCGTTTGTCGAAGCGTTTGCGGCTGACCAAGACCGCTTCTTCAACGCTTTCTCT 957
Query 1024 TCCGCGTTTGTAAAATTGTCGTCTTACAAAGTGTTAACCGGGAATGAAGGAGTAATTAGA 1083
||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 958 TCCGCGTTTGTAAAATTGTCGTCTTACAAAGTGTTAACCGGGAGTGAAGGAGTAGTTAGA 1017
Query 1084 AGCGTGTGTGACAAGGTTGATTGATGTATATTTATAATTATCAA 1127
||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1018 AGCGTATGTGACAAGGTTGACTGATGTATATTTATAATTATCAA 1061
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42545175372
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5