BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G17080.1

Length=579
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg929549 jgi|Araly1|929549|scaffold_302006.1                        516    8e-146


> Ahg929549 jgi|Araly1|929549|scaffold_302006.1
Length=385

 Score =  516 bits (279),  Expect = 8e-146
 Identities = 349/383 (91%), Gaps = 3/383 (1%)
 Strand=Plus/Plus

Query  91   TTATGTTTATGAGTGCAATTATGTCTCGAGCCTCGACGAGTGTAGTGATTTATAATGATC  150
            ||||||| | |||||||| |||||| ||||||||||||| ||||||||||||||||||||
Sbjct  1    TTATGTTCACGAGTGCAACTATGTCCCGAGCCTCGACGACTGTAGTGATTTATAATGATC  60

Query  151  TTGGAGGTGGTTTGCCACTACGGCACCACTGCAAATCAAGAGAGGATGATCTTGGATACC  210
            ||||||||||||||||||||||| |||||||||||||| | || |||||||||||| |||
Sbjct  61   TTGGAGGTGGTTTGCCACTACGGTACCACTGCAAATCAGGGGACGATGATCTTGGAGACC  120

Query  211  AGAGTTTAGCACCAGGTAGATCGTGGTCGTTTGGATTTACACCGGATATTTTTGGCCGGA  270
             |||||||||||||||| |||||||||||||||||||||| |||||||| || ||| |||
Sbjct  121  GGAGTTTAGCACCAGGTGGATCGTGGTCGTTTGGATTTACTCCGGATATCTTCGGCAGGA  180

Query  271  CTTTGTTTTACTGTCGTTTTAGTTGGGGAGCTGAGAGTCATATATTTGATATCTACAAAC  330
            ||||||||| |||| | ||||||||||||  ||||||||||| |||||||||||||||||
Sbjct  181  CTTTGTTTTTCTGTAGCTTTAGTTGGGGAAATGAGAGTCATAAATTTGATATCTACAAAC  240

Query  331  AGAGTAGAGACAAAGAATTTCAAGAGTTTGGTTGCAAAAAATGCGAATGGAAAATACGGA  390
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  241  AGAGTAGAGACAAAGAATTTCAAGAGTTTGGCTGCAAAAAATGCGAATGGAAAATACGGA  300

Query  391  AAAATGGACCTTGCAAGTTTTATAAGAAGACCGGCATGTTTGATCATTGCTATTC-TTGG  449
            |||||||||||||||||||  ||  |||||||||| ||||||||  ||||| ||| ||||
Sbjct  301  AAAATGGACCTTGCAAGTTGAATGGGAAGACCGGCGTGTTTGATGGTTGCT-TTCCTTGG  359

Query  450  GATTAATATCCTTATTTTATAAA  472
            |||||| |||||| |||||||||
Sbjct  360  GATTAA-ATCCTTCTTTTATAAA  381



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21176351895


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5