BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G17090.1 Length=1642 Score E Sequences producing significant alignments: (Bits) Value Ahg479178 jgi|Araly1|479178|fgenesh2_kg.3__1879__AT3G17090.1 2377 0.0 > Ahg479178 jgi|Araly1|479178|fgenesh2_kg.3__1879__AT3G17090.1 Length=1505 Score = 2377 bits (1287), Expect = 0.0 Identities = 1438/1510 (95%), Gaps = 14/1510 (1%) Strand=Plus/Plus Query 1 ATCATCCCTTCCATTAAGACCTAGGGTTTTCTCTCTCTCCCATCATTCTCTTCTCCCGAT 60 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATCTTCCCTTCCATTAAGACCTAGGGTTTTCTCTCTCTCCCATCATTCTCTTCTCCCGAT 60 Query 61 CTCATTTCCATTACCCAATCCCGCTCCTTT-TCTCTGATTT-TGAATCGAACCCTTAATA 118 |||||||||||||||||||||||||||||| ||||| |||| |||||||||||||||||| Sbjct 61 CTCATTTCCATTACCCAATCCCGCTCCTTTATCTCTAATTTGTGAATCGAACCCTTAATA 120 Query 119 CCCAG-AAATCTCACGGTTCCGAGGAGTGGGTTTTTGGGGGTTAGGGTTTTCGAGAGATG 177 |||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||| Sbjct 121 CCCAACAAATCTCACGGTTCCGAGGAGTGGGTTTT-GGGG-TTAGGGTTTTCGAGAGATG 178 Query 178 TTGAATGTCAGGTTCATTGATGAATCTGTTTTCTCTCTGCTTCAAGCCATTCGGGCACGT 237 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 179 TTGAATGTCAGGTTCATTGATGAATCTGTTTTCTCTCTGCTTCAAGCCATTCGGGCACAT 238 Query 238 CTGTGATAATTCCGAAGCTGGATCGGGTGGTGGTGGTGGCGTTTCTGGTGGAACCGGCGG 297 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || Sbjct 239 CTGTGATAATTCCGAAGCTGGATCGGGTGGTGGTGGTGGCGTTTCTGGTGGAAGCGGTGG 298 Query 298 TGAAGGCAAAGACGGA-TTGCTTTGGTTCCGTGATCTCGGTAAATATTGCGGCGGAGATT 356 |||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||| Sbjct 299 TGAAGGCAAAGACGGACTT-CTTTGGTTTCGTGATCTCGGTAAATATTGCGGCGGAGATT 357 Query 357 TCTCCATGGCTGTGATTCAAGCCAATCAGGTTCTTGAAGATCAGAGCCAGGTCGAATCCG 416 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 358 TCTCCATGGCTGTGATTCAAGCCAATCAGGTTCTTGAAGATCAGAGCCAGATCGAATCCG 417 Query 417 GTAATTTTGGGACTTTTGTTGGTGTTTACGATGGTCATGGTGGTCCTGAAGCTGCTCGTT 476 ||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||| Sbjct 418 GTAATTTCGGGACTTTCGTTGGTGTTTACGATGGTCATGGTGGCCCTGAAGCTGCTCGTT 477 Query 477 ATGTCTGTGATCATCTCTTTAACCATTTTCGAGAAATATCAGCGGAAACACAAGGAGTTG 536 |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| Sbjct 478 ATGTCTGTGATCATCTCTTTAACCATTTTCGAGAAATATCAGCGGAGACGCAAGGAGTTG 537 Query 537 TGACGAGAGAGACGATAGAAAGAGCCTTTCATGCGACAGAAGAAGGATTCGCTTCCATTG 596 |||| |||||||| ||| ||||||||||||||||||| ||||||||||| |||||||||| Sbjct 538 TGACAAGAGAGACAATACAAAGAGCCTTTCATGCGACCGAAGAAGGATTTGCTTCCATTG 597 Query 597 TGTCAGAGCTGTGGCAAGAAATACCAAATTTGGCAACTGTTGGCACTTGTTGTTTGGTTG 656 ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| Sbjct 598 TGTCAGAGCTGTGGCAAGAAATACCAAATTTGGCAACTGTTGGCACTTGTTGTCTAGTTG 657 Query 657 GAGTGATATATCAAAATACTCTTTTTGTGGCAAGTCTTGGAGATTCACGGGTTGTTCTTG 716 ||||||||||||||||||||||||| ||||| || || |||||||||||||||||||||| Sbjct 658 GAGTGATATATCAAAATACTCTTTTCGTGGCTAGCCTCGGAGATTCACGGGTTGTTCTTG 717 Query 717 GAAAGAAAGGCAACTGTGGCGGACTCTCTGCTATTCAGCTGTCGACTGAACACAATGCTA 776 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 718 GAAAGAAAGGCAACTGTGGCGGACTCTCTGCTATTCAGCTGTCGACTGAACACAATGCCA 777 Query 777 ACAATGAAGATATTCGTTGGGAACTCAAGGACTTACATCCTGATGACCCGCAGATCGTTG 836 |||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 778 ACAACGAGGATATTCGTTGGGAACTCAAGGACTTACATCCTGATGACCCACAGATCGTTG 837 Query 837 TGTTCAGGCATGGAGTTTGGAGAGTTAAGGGCATCATTCAGGTATCGAGGTCTATAGGAG 896 |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| Sbjct 838 TGTTCAGGCATGGAGTTTGGAGAGTTAAAGGCATCATTCAGGTTTCGAGGTCTATAGGAG 897 Query 897 ACATGTACATGAAACGGCCCGAATTTAACAAGGAGCCAATCAGTCAAAAGTTCAGAATTG 956 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| Sbjct 898 ACATGTACATGAAACGGCCTGAATTTAACAAGGAGCCAATCAGTCAAAAGTTCAGACTTG 957 Query 957 CAGAGCCAATGAAAAGACCCTTGATGTCTGCAACACCAACAATACTCTCTCATCCTCTGC 1016 ||||||||||||| ||||| ||||||||||||||||| || ||||| ||||||||||||| Sbjct 958 CAGAGCCAATGAAGAGACCATTGATGTCTGCAACACCGACCATACTTTCTCATCCTCTGC 1017 Query 1017 ACCCTAATGATTCGTTTCTCATTTTTGCATCTGATGGTCTTTGGGAGCATTTGACTAACG 1076 | |||||||||||||||||||||||||| || |||||||||||||| ||||||||||||| Sbjct 1018 ATCCTAATGATTCGTTTCTCATTTTTGCGTCGGATGGTCTTTGGGAACATTTGACTAACG 1077 Query 1077 AAAAAGCAGTTGAGATTGTTCATAACCATCCCCGTGCTGGAAGCGCAAAGAGACTGATAA 1136 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1078 AAAAAGCAGTTGAGATTGTTCATAACCATCCCCGTGCTGGAAGCGCAAAGAGACTGATAA 1137 Query 1137 AGGCGGCTCTTCACGAGGCAGCGAGGAAACGTGAGATGAGATATTCAGATCTAAGGAAGA 1196 | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1138 AAGCTGCTCTTCACGAGGCAGCGAGGAAACGTGAGATGAGATATTCAGATCTAAGGAAGA 1197 Query 1197 TTGACAAGAAAGTGAGACGACATTTTCATGATGACATCACGGTTATAGTGGTGTTCTTGA 1256 ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| Sbjct 1198 TTGACAAGAAAGTGAGACGCCATTTTCACGATGACATCACGGTTATAGTGGTGTTCTTGA 1257 Query 1257 ACCATGACCTCATATCGAGAGGCCACATCAACTCAACCCAAGACACAACAGTCTCTATAC 1316 |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1258 ACCATGACCTCATATCCAGAGGCCACATCAACACAACCCAAGACACAACAGTCTCTATAC 1317 Query 1317 GGAGTGCTCTTGAACACTGAGAATCCCAAA-CATTTTACAACAATGTTTCTTCTTACTTG 1375 |||||||||||||||||||| || || ||| ||||||||||||||||||||| ||||||| Sbjct 1318 GGAGTGCTCTTGAACACTGAAAA-CCAAAAACATTTTACAACAATGTTTCTTATTACTTG 1376 Query 1376 ATTATATGACTTTTGCCTAGAATGAATaaaaaaaaggcaacatatggaaaaaac----ca 1431 |||||||||||||||||||||||||||||| ||||||||||||||||||| || Sbjct 1377 GTTATATGACTTTTGCCTAGAATGAATAAAAGCTAGGCAACATATGGAAAAAAAAAAACA 1436 Query 1432 aaaatgaaaaaaaCAACATCATTATCGTACGTAATGAGTTCTCTCTTGTATTAAGCGGCT 1491 |||||||||||| | ||||||||||||||||||||||||| |||||||| |||||||||| Sbjct 1437 AAAATGAAAAAA-CGACATCATTATCGTACGTAATGAGTTATCTCTTGTCTTAAGCGGCT 1495 Query 1492 ATGTTTGACT 1501 |||||||||| Sbjct 1496 ATGTTTGACT 1505 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 61553835920 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5