BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G17090.1
Length=1642
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479178 jgi|Araly1|479178|fgenesh2_kg.3__1879__AT3G17090.1 2377 0.0
> Ahg479178 jgi|Araly1|479178|fgenesh2_kg.3__1879__AT3G17090.1
Length=1505
Score = 2377 bits (1287), Expect = 0.0
Identities = 1438/1510 (95%), Gaps = 14/1510 (1%)
Strand=Plus/Plus
Query 1 ATCATCCCTTCCATTAAGACCTAGGGTTTTCTCTCTCTCCCATCATTCTCTTCTCCCGAT 60
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATCTTCCCTTCCATTAAGACCTAGGGTTTTCTCTCTCTCCCATCATTCTCTTCTCCCGAT 60
Query 61 CTCATTTCCATTACCCAATCCCGCTCCTTT-TCTCTGATTT-TGAATCGAACCCTTAATA 118
|||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||
Sbjct 61 CTCATTTCCATTACCCAATCCCGCTCCTTTATCTCTAATTTGTGAATCGAACCCTTAATA 120
Query 119 CCCAG-AAATCTCACGGTTCCGAGGAGTGGGTTTTTGGGGGTTAGGGTTTTCGAGAGATG 177
|||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 121 CCCAACAAATCTCACGGTTCCGAGGAGTGGGTTTT-GGGG-TTAGGGTTTTCGAGAGATG 178
Query 178 TTGAATGTCAGGTTCATTGATGAATCTGTTTTCTCTCTGCTTCAAGCCATTCGGGCACGT 237
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 179 TTGAATGTCAGGTTCATTGATGAATCTGTTTTCTCTCTGCTTCAAGCCATTCGGGCACAT 238
Query 238 CTGTGATAATTCCGAAGCTGGATCGGGTGGTGGTGGTGGCGTTTCTGGTGGAACCGGCGG 297
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 239 CTGTGATAATTCCGAAGCTGGATCGGGTGGTGGTGGTGGCGTTTCTGGTGGAAGCGGTGG 298
Query 298 TGAAGGCAAAGACGGA-TTGCTTTGGTTCCGTGATCTCGGTAAATATTGCGGCGGAGATT 356
|||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||
Sbjct 299 TGAAGGCAAAGACGGACTT-CTTTGGTTTCGTGATCTCGGTAAATATTGCGGCGGAGATT 357
Query 357 TCTCCATGGCTGTGATTCAAGCCAATCAGGTTCTTGAAGATCAGAGCCAGGTCGAATCCG 416
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 358 TCTCCATGGCTGTGATTCAAGCCAATCAGGTTCTTGAAGATCAGAGCCAGATCGAATCCG 417
Query 417 GTAATTTTGGGACTTTTGTTGGTGTTTACGATGGTCATGGTGGTCCTGAAGCTGCTCGTT 476
||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 418 GTAATTTCGGGACTTTCGTTGGTGTTTACGATGGTCATGGTGGCCCTGAAGCTGCTCGTT 477
Query 477 ATGTCTGTGATCATCTCTTTAACCATTTTCGAGAAATATCAGCGGAAACACAAGGAGTTG 536
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 478 ATGTCTGTGATCATCTCTTTAACCATTTTCGAGAAATATCAGCGGAGACGCAAGGAGTTG 537
Query 537 TGACGAGAGAGACGATAGAAAGAGCCTTTCATGCGACAGAAGAAGGATTCGCTTCCATTG 596
|||| |||||||| ||| ||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 538 TGACAAGAGAGACAATACAAAGAGCCTTTCATGCGACCGAAGAAGGATTTGCTTCCATTG 597
Query 597 TGTCAGAGCTGTGGCAAGAAATACCAAATTTGGCAACTGTTGGCACTTGTTGTTTGGTTG 656
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 598 TGTCAGAGCTGTGGCAAGAAATACCAAATTTGGCAACTGTTGGCACTTGTTGTCTAGTTG 657
Query 657 GAGTGATATATCAAAATACTCTTTTTGTGGCAAGTCTTGGAGATTCACGGGTTGTTCTTG 716
||||||||||||||||||||||||| ||||| || || ||||||||||||||||||||||
Sbjct 658 GAGTGATATATCAAAATACTCTTTTCGTGGCTAGCCTCGGAGATTCACGGGTTGTTCTTG 717
Query 717 GAAAGAAAGGCAACTGTGGCGGACTCTCTGCTATTCAGCTGTCGACTGAACACAATGCTA 776
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 718 GAAAGAAAGGCAACTGTGGCGGACTCTCTGCTATTCAGCTGTCGACTGAACACAATGCCA 777
Query 777 ACAATGAAGATATTCGTTGGGAACTCAAGGACTTACATCCTGATGACCCGCAGATCGTTG 836
|||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 778 ACAACGAGGATATTCGTTGGGAACTCAAGGACTTACATCCTGATGACCCACAGATCGTTG 837
Query 837 TGTTCAGGCATGGAGTTTGGAGAGTTAAGGGCATCATTCAGGTATCGAGGTCTATAGGAG 896
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 838 TGTTCAGGCATGGAGTTTGGAGAGTTAAAGGCATCATTCAGGTTTCGAGGTCTATAGGAG 897
Query 897 ACATGTACATGAAACGGCCCGAATTTAACAAGGAGCCAATCAGTCAAAAGTTCAGAATTG 956
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 898 ACATGTACATGAAACGGCCTGAATTTAACAAGGAGCCAATCAGTCAAAAGTTCAGACTTG 957
Query 957 CAGAGCCAATGAAAAGACCCTTGATGTCTGCAACACCAACAATACTCTCTCATCCTCTGC 1016
||||||||||||| ||||| ||||||||||||||||| || ||||| |||||||||||||
Sbjct 958 CAGAGCCAATGAAGAGACCATTGATGTCTGCAACACCGACCATACTTTCTCATCCTCTGC 1017
Query 1017 ACCCTAATGATTCGTTTCTCATTTTTGCATCTGATGGTCTTTGGGAGCATTTGACTAACG 1076
| |||||||||||||||||||||||||| || |||||||||||||| |||||||||||||
Sbjct 1018 ATCCTAATGATTCGTTTCTCATTTTTGCGTCGGATGGTCTTTGGGAACATTTGACTAACG 1077
Query 1077 AAAAAGCAGTTGAGATTGTTCATAACCATCCCCGTGCTGGAAGCGCAAAGAGACTGATAA 1136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 AAAAAGCAGTTGAGATTGTTCATAACCATCCCCGTGCTGGAAGCGCAAAGAGACTGATAA 1137
Query 1137 AGGCGGCTCTTCACGAGGCAGCGAGGAAACGTGAGATGAGATATTCAGATCTAAGGAAGA 1196
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 AAGCTGCTCTTCACGAGGCAGCGAGGAAACGTGAGATGAGATATTCAGATCTAAGGAAGA 1197
Query 1197 TTGACAAGAAAGTGAGACGACATTTTCATGATGACATCACGGTTATAGTGGTGTTCTTGA 1256
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 1198 TTGACAAGAAAGTGAGACGCCATTTTCACGATGACATCACGGTTATAGTGGTGTTCTTGA 1257
Query 1257 ACCATGACCTCATATCGAGAGGCCACATCAACTCAACCCAAGACACAACAGTCTCTATAC 1316
|||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1258 ACCATGACCTCATATCCAGAGGCCACATCAACACAACCCAAGACACAACAGTCTCTATAC 1317
Query 1317 GGAGTGCTCTTGAACACTGAGAATCCCAAA-CATTTTACAACAATGTTTCTTCTTACTTG 1375
|||||||||||||||||||| || || ||| ||||||||||||||||||||| |||||||
Sbjct 1318 GGAGTGCTCTTGAACACTGAAAA-CCAAAAACATTTTACAACAATGTTTCTTATTACTTG 1376
Query 1376 ATTATATGACTTTTGCCTAGAATGAATaaaaaaaaggcaacatatggaaaaaac----ca 1431
|||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 1377 GTTATATGACTTTTGCCTAGAATGAATAAAAGCTAGGCAACATATGGAAAAAAAAAAACA 1436
Query 1432 aaaatgaaaaaaaCAACATCATTATCGTACGTAATGAGTTCTCTCTTGTATTAAGCGGCT 1491
|||||||||||| | ||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 1437 AAAATGAAAAAA-CGACATCATTATCGTACGTAATGAGTTATCTCTTGTCTTAAGCGGCT 1495
Query 1492 ATGTTTGACT 1501
||||||||||
Sbjct 1496 ATGTTTGACT 1505
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61553835920
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5