BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G17100.1
Length=1167
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479179 jgi|Araly1|479179|fgenesh2_kg.3__1880__AT3G17100.2 1190 0.0
> Ahg479179 jgi|Araly1|479179|fgenesh2_kg.3__1880__AT3G17100.2
Length=1081
Score = 1190 bits (644), Expect = 0.0
Identities = 869/970 (90%), Gaps = 46/970 (5%)
Strand=Plus/Plus
Query 205 TCTACA-CAGATCCTCGATTCCGATCCAACAGTTCGAATTCAGTTTCCGATTCTGATCTG 263
||| || |||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 151 TCTCCATCAGATCCTCGATTCCGATCCAACAGTTCGATTTCAGTTTCTGATTCTGATCTC 210
Query 264 ATCGAACCAATACTCACTGAGATTTGATCGGCGATTATGGAGTCTATATCTCCGGTATCG 323
|||||||||| |||| |||||||||||||||| || | || | | |
Sbjct 211 ATCGAACCAAAACTCGCTGAGATTTGATCGGC-------GA---T-TA--T---G----G 250
Query 324 AATCAGCTTCTTCAGCCGACGACGACGAGCTCTAATTCCGATCGCTCTCGTCGTAAGCGT 383
||||||||||||| | ||||||||||||||| ||||||||| ||||||||||||||
Sbjct 251 -ATCAGCTTCTTCA-TC--CGACGACGAGCTCTAGTTCCGATCGTTCTCGTCGTAAGCGG 306
Query 384 AAGAAGAAATCATCGCC-ATCATCGGTTGAGAAATCTCCATCTCCGTCAATATCGTTGGA 442
||||||||||||||||| | | || |||| |||||| || || || | |||||||||
Sbjct 307 AAGAAGAAATCATCGCCGA-CGTCTCTTGATTCATCTCCGTCACCATCCACATCGTTGGA 365
Query 443 GAAATGGAGATCGGAGAAGCAGCAACAGATCTACTCAACGAAGCTAGTTCATGCTTTAAG 502
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 366 GAAATGGAGATCGGAGAAGCAGCAACAGATCTACTCAACGAAGCTAGTTCGTGCTTTAAA 425
Query 503 AGAGCTACGAATCAGCCAACAACCATCTTCATCATCATCTTCTTCGATTCCACGTGGAGG 562
|||||| |||||||| |||||||||||||| ||||| || |||||| ||||||| || ||
Sbjct 426 AGAGCTTCGAATCAGTCAACAACCATCTTCGTCATCGTCGTCTTCGGTTCCACGCGGCGG 485
Query 563 TAGAGCCGTACGTGAAGTCGCCGATAGAGCTTTAGCAGTTGCGGCGAGAGGTAAAACGTT 622
|||||| || |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 486 TAGAGCTGTGCGTGAAGTCGCCGATAGAGCTTTAGCAGTTGCGGCGAGGGGTAAAACGTT 545
Query 623 ATGGAGTCGAGCGATACTTTCAAAAGCTGTAAAACTCAAATTCAGGAAACACAAACGCCA 682
|||||||||||||||||| || ||||| |||||||||||||||||||| || ||||| ||
Sbjct 546 ATGGAGTCGAGCGATACTATCGAAAGCCGTAAAACTCAAATTCAGGAAGCAGAAACGGCA 605
Query 683 GAGAATCTCTAATCC---GACGACGACGACGTTAACCACCGGGAGTATCAGGTCAAAGAA 739
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 606 GAGAATCTCCAATCCGGTGACGACGACGACGTTAACCACCGGGAGTATCAGGTCAAAGAA 665
Query 740 ACAGAGAGCGACGGTTTTGAGGCTTAAGGCTAAAGGTTTGCCAGCTGTACAGAGGAAAGT 799
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 666 ACAGAGAGCGACGGTTTTGAGGCTTAAGGCTAAAGGTTTGCCAGCTGTACAGAGGAAAGT 725
Query 800 GAAAGTACTGAGCCGGTTAGTTCCCGGTTGCCGTAAACAATCATTACCGGTGGTTTTAGA 859
|||| | ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 726 GAAACTTCTGAGCCGGTTAGTTCCCGGTTGCCGTAAACAAACATTACCGGTGGTTTTAGA 785
Query 860 AGAAACCACTGATTATATAGCTGCGATGGAGATGCAGATTCGTACTATGACTGCGATTCT 919
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 786 AGAAACTACTGATTATATAGCTGCCATGGAGATGCAGATTCGTACTATGACTGCGATTCT 845
Query 920 CTCCGCCGTTAGTTCTTCTCCTCCGCCGCCAACGCCAGGTCACGAAGGGGGACAAACACA 979
||||||||| |||||||||||||||||||| |||||||||| || ||||||||||||||
Sbjct 846 CTCCGCCGTCAGTTCTTCTCCTCCGCCGCCGCCGCCAGGTCATGATGGGGGACAAACACA 905
Query 980 CATGCTTGGTTAGTTGGCCAAACTGTCCTTTTA-tttttttCCAATTTTaaaaaccaaaa 1038
|||||||||||||||| |||||||||||||||| |||||||| | ||| ||||| ||||
Sbjct 906 CATGCTTGGTTAGTTGCCCAAACTGTCCTTTTAATTTTTTTC-A-TTT-AAAAA--AAAA 960
Query 1039 aaaaaaCTGtttttttttATCATATTATTATTCTTCTCACTGTATTGTTTGTTGTTTGAA 1098
|||| |||||||| ||| | ||||||||||||||||||||||||||||||||||
Sbjct 961 AAAA--CTGTTTTTC-----CAT-T-ATTATTCTTCTCACTGTATTGTTTGTTGTTTGAA 1011
Query 1099 TATTTTACTATTCAACTTTATTTACCATTTCGTCATGTATATCCTT-TTTTCTTGAATCT 1157
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 1012 TATTTTACTATTCAACTTTATTTACCATTTCATCATGTATATCCTTATTTTCTTGAATCT 1071
Query 1158 CTCTATTACC 1167
|||| |||||
Sbjct 1072 CTCTGTTACC 1081
Score = 128 bits (69), Expect = 9e-29
Identities = 107/123 (87%), Gaps = 12/123 (10%)
Strand=Plus/Plus
Query 14 aaaataaaa-ataaaaggaagaagaag-aagaagaaagGATTCGTCTTCCTTCTTCCACA 71
||||||||| ||||| || || ||| ||| |||||||||||||||||| |||||||||
Sbjct 45 AAAATAAAATTTAAAA-AAAAAAAAAGAAAG-AGAAAGGATTCGTCTTCC-TCTTCCACA 101
Query 72 CCCTTTCTGACACCTCATCTCCCCTCCCACCTTCTCC---GTCCCGTTCCGTTTCTCCAT 128
||||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||
Sbjct 102 CCCTTTCTGACACCTCATCTC---TCCCACCTTCTCCTCCGTCCCGTTCCGTT-CTCCAT 157
Query 129 CAG 131
|||
Sbjct 158 CAG 160
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43536371214
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5