BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G17100.1 Length=1167 Score E Sequences producing significant alignments: (Bits) Value Ahg479179 jgi|Araly1|479179|fgenesh2_kg.3__1880__AT3G17100.2 1190 0.0 > Ahg479179 jgi|Araly1|479179|fgenesh2_kg.3__1880__AT3G17100.2 Length=1081 Score = 1190 bits (644), Expect = 0.0 Identities = 869/970 (90%), Gaps = 46/970 (5%) Strand=Plus/Plus Query 205 TCTACA-CAGATCCTCGATTCCGATCCAACAGTTCGAATTCAGTTTCCGATTCTGATCTG 263 ||| || |||||||||||||||||||||||||||||| ||||||||| ||||||||||| Sbjct 151 TCTCCATCAGATCCTCGATTCCGATCCAACAGTTCGATTTCAGTTTCTGATTCTGATCTC 210 Query 264 ATCGAACCAATACTCACTGAGATTTGATCGGCGATTATGGAGTCTATATCTCCGGTATCG 323 |||||||||| |||| |||||||||||||||| || | || | | | Sbjct 211 ATCGAACCAAAACTCGCTGAGATTTGATCGGC-------GA---T-TA--T---G----G 250 Query 324 AATCAGCTTCTTCAGCCGACGACGACGAGCTCTAATTCCGATCGCTCTCGTCGTAAGCGT 383 ||||||||||||| | ||||||||||||||| ||||||||| |||||||||||||| Sbjct 251 -ATCAGCTTCTTCA-TC--CGACGACGAGCTCTAGTTCCGATCGTTCTCGTCGTAAGCGG 306 Query 384 AAGAAGAAATCATCGCC-ATCATCGGTTGAGAAATCTCCATCTCCGTCAATATCGTTGGA 442 ||||||||||||||||| | | || |||| |||||| || || || | ||||||||| Sbjct 307 AAGAAGAAATCATCGCCGA-CGTCTCTTGATTCATCTCCGTCACCATCCACATCGTTGGA 365 Query 443 GAAATGGAGATCGGAGAAGCAGCAACAGATCTACTCAACGAAGCTAGTTCATGCTTTAAG 502 |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 366 GAAATGGAGATCGGAGAAGCAGCAACAGATCTACTCAACGAAGCTAGTTCGTGCTTTAAA 425 Query 503 AGAGCTACGAATCAGCCAACAACCATCTTCATCATCATCTTCTTCGATTCCACGTGGAGG 562 |||||| |||||||| |||||||||||||| ||||| || |||||| ||||||| || || Sbjct 426 AGAGCTTCGAATCAGTCAACAACCATCTTCGTCATCGTCGTCTTCGGTTCCACGCGGCGG 485 Query 563 TAGAGCCGTACGTGAAGTCGCCGATAGAGCTTTAGCAGTTGCGGCGAGAGGTAAAACGTT 622 |||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 486 TAGAGCTGTGCGTGAAGTCGCCGATAGAGCTTTAGCAGTTGCGGCGAGGGGTAAAACGTT 545 Query 623 ATGGAGTCGAGCGATACTTTCAAAAGCTGTAAAACTCAAATTCAGGAAACACAAACGCCA 682 |||||||||||||||||| || ||||| |||||||||||||||||||| || ||||| || Sbjct 546 ATGGAGTCGAGCGATACTATCGAAAGCCGTAAAACTCAAATTCAGGAAGCAGAAACGGCA 605 Query 683 GAGAATCTCTAATCC---GACGACGACGACGTTAACCACCGGGAGTATCAGGTCAAAGAA 739 ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 606 GAGAATCTCCAATCCGGTGACGACGACGACGTTAACCACCGGGAGTATCAGGTCAAAGAA 665 Query 740 ACAGAGAGCGACGGTTTTGAGGCTTAAGGCTAAAGGTTTGCCAGCTGTACAGAGGAAAGT 799 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 666 ACAGAGAGCGACGGTTTTGAGGCTTAAGGCTAAAGGTTTGCCAGCTGTACAGAGGAAAGT 725 Query 800 GAAAGTACTGAGCCGGTTAGTTCCCGGTTGCCGTAAACAATCATTACCGGTGGTTTTAGA 859 |||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 726 GAAACTTCTGAGCCGGTTAGTTCCCGGTTGCCGTAAACAAACATTACCGGTGGTTTTAGA 785 Query 860 AGAAACCACTGATTATATAGCTGCGATGGAGATGCAGATTCGTACTATGACTGCGATTCT 919 |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 786 AGAAACTACTGATTATATAGCTGCCATGGAGATGCAGATTCGTACTATGACTGCGATTCT 845 Query 920 CTCCGCCGTTAGTTCTTCTCCTCCGCCGCCAACGCCAGGTCACGAAGGGGGACAAACACA 979 ||||||||| |||||||||||||||||||| |||||||||| || |||||||||||||| Sbjct 846 CTCCGCCGTCAGTTCTTCTCCTCCGCCGCCGCCGCCAGGTCATGATGGGGGACAAACACA 905 Query 980 CATGCTTGGTTAGTTGGCCAAACTGTCCTTTTA-tttttttCCAATTTTaaaaaccaaaa 1038 |||||||||||||||| |||||||||||||||| |||||||| | ||| ||||| |||| Sbjct 906 CATGCTTGGTTAGTTGCCCAAACTGTCCTTTTAATTTTTTTC-A-TTT-AAAAA--AAAA 960 Query 1039 aaaaaaCTGtttttttttATCATATTATTATTCTTCTCACTGTATTGTTTGTTGTTTGAA 1098 |||| |||||||| ||| | |||||||||||||||||||||||||||||||||| Sbjct 961 AAAA--CTGTTTTTC-----CAT-T-ATTATTCTTCTCACTGTATTGTTTGTTGTTTGAA 1011 Query 1099 TATTTTACTATTCAACTTTATTTACCATTTCGTCATGTATATCCTT-TTTTCTTGAATCT 1157 ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| Sbjct 1012 TATTTTACTATTCAACTTTATTTACCATTTCATCATGTATATCCTTATTTTCTTGAATCT 1071 Query 1158 CTCTATTACC 1167 |||| ||||| Sbjct 1072 CTCTGTTACC 1081 Score = 128 bits (69), Expect = 9e-29 Identities = 107/123 (87%), Gaps = 12/123 (10%) Strand=Plus/Plus Query 14 aaaataaaa-ataaaaggaagaagaag-aagaagaaagGATTCGTCTTCCTTCTTCCACA 71 ||||||||| ||||| || || ||| ||| |||||||||||||||||| ||||||||| Sbjct 45 AAAATAAAATTTAAAA-AAAAAAAAAGAAAG-AGAAAGGATTCGTCTTCC-TCTTCCACA 101 Query 72 CCCTTTCTGACACCTCATCTCCCCTCCCACCTTCTCC---GTCCCGTTCCGTTTCTCCAT 128 ||||||||||||||||||||| ||||||||||||| ||||||||||||| |||||| Sbjct 102 CCCTTTCTGACACCTCATCTC---TCCCACCTTCTCCTCCGTCCCGTTCCGTT-CTCCAT 157 Query 129 CAG 131 ||| Sbjct 158 CAG 160 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 43536371214 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5