BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G17110.1
Length=860
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479181 jgi|Araly1|479181|fgenesh2_kg.3__1882__AT3G17110.1 861 0.0
> Ahg479181 jgi|Araly1|479181|fgenesh2_kg.3__1882__AT3G17110.1
Length=704
Score = 861 bits (466), Expect = 0.0
Identities = 649/731 (89%), Gaps = 37/731 (5%)
Strand=Plus/Plus
Query 16 TTCTAAATTACAAACGGCTTCTCTAGCTAGC-TC-TTTTTTC-TAAAACTTTCACAAAGA 72
||||| | ||||||||||||||||||||||| || ||| || ||||||||| ||||| |
Sbjct 1 TTCTACACTACAAACGGCTTCTCTAGCTAGCTTCGTTTACTCTTAAAACTTTTACAAAAA 60
Query 73 ACGATCTCTTAATTTGTGGCTGACATAGCTTGGTTCTTAATAAAGAAGTTGTGGAA-ATG 131
|||||||||| ||||||||||||| | ||||||||||||||||||| || |||
Sbjct 61 ACGATCTCTTGATTTGTGGCTGAC--A------TTCTTAATAAAGAAGTTGT-AAACATG 111
Query 132 GGAAGCCTCAAGTACTTAGGAGTTGCTTTCTTTGTTTTAGTTGTTTTTGACGTCTGTTTA 191
||||||||| ||| |||||||| ||||||||| |||||||| ||||||||| ||||||||
Sbjct 112 GGAAGCCTCCAGTTCTTAGGAGCTGCTTTCTTGGTTTTAGTAGTTTTTGACTTCTGTTTA 171
Query 192 GCAGCTAGATCACCAAAAGCTCTTGGTAGAGGGTCCGGTTCAGGTTCTGGATATGGTTCA 251
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 172 GCAGCTAGATCACCAAAAGCTCTTGGTAGAGGGTCCGGTTCAGGTTCAGGATATGGTTCA 231
Query 252 GGCTCtgggggaggtaacggtggtgggggaggtggtggtggcggagggggaggcggcgga 311
|||||||||||||| |||||||| || || ||||| || || ||||| ||||| || |||
Sbjct 232 GGCTCTGGGGGAGGCAACGGTGGAGGTGGTGGTGGAGGAGGAGGAGGAGGAGGAGGAGGA 291
Query 312 ggaggtggtggtggagatggaTCAGGTTCAGGGAGTGGTTACGGGTCAGGGTATGGGTCC 371
||||| |||||| | || ||| ||||||||||||||||||||||||||||||||||| |
Sbjct 292 GGAGGGGGTGGT-G-GA-GGAGAAGGTTCAGGGAGTGGTTACGGGTCAGGGTATGGGTAC 348
Query 372 GGTAGTGGTTAtggaggaggaaacaacggtggtggcggtggaggt-g-gg-ggc---aga 425
|||||||||||||||||||||||| || ||||| ||||||||| | || ||| |||
Sbjct 349 GGTAGTGGTTATGGAGGAGGAAACGGTGGAGGTGGAGGTGGAGGTGGAGGTGGCGGTAGA 408
Query 426 ggtggtggaggaggaggcggaaatggaggtTCCGGAAACGGGTCAGGTTATGGAAGCGGC 485
||||||||||| ||||||||||| |||||||||||| |||| ||||||||||||||||||
Sbjct 409 GGTGGTGGAGGTGGAGGCGGAAACGGAGGTTCCGGATACGGATCAGGTTATGGAAGCGGC 468
Query 486 TCTGGATAtggaagtggtgctggtagaggtggtggtgggggaggcggcggtggaggagga 545
||||||||||||| || ||||||||| ||||| || ||||||||||||
Sbjct 469 TCTGGATATGGAA---------GT---GGTGGTGGT---GGAGGTGGTGGTGGAGGAGGA 513
Query 546 ggaggtggtggtggaggtAGCCGCGGAAATGGATCCGGCTATGGAAGTGGATATGGTGAA 605
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 514 GGAGGTGGTGGTGGTGGTAGCCGCGGAAATGGATCCGGCTATGGAAGTGGATATGGTGAA 573
Query 606 GGGTATGGAAGCGGATACGGTGGTGGAGATAATTACGGTGACTCACCCTAAATCATTCTT 665
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 574 GGGTATGGAAGCGGATACGGTGGTGGAGATAATAACGGTGACTCACCCTAAATCATTCTT 633
Query 666 ATTGCTTATTGTTTCATGATTCTGAACTTATGATAATAATGTGTTCGATGTTTTGTCGTT 725
||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 634 ATTGCTTATTGTTGCATGATTCTGAACTTATGATAATAAGGTGTTCGATGTTTTGTGGTT 693
Query 726 ACATATATATA 736
|||||||||||
Sbjct 694 ACATATATATA 704
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31832635695
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5