BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G17120.1
Length=1661
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479182 jgi|Araly1|479182|fgenesh2_kg.3__1883__AT3G17120.1 2122 0.0
> Ahg479182 jgi|Araly1|479182|fgenesh2_kg.3__1883__AT3G17120.1
Length=1574
Score = 2122 bits (1149), Expect = 0.0
Identities = 1482/1630 (91%), Gaps = 73/1630 (4%)
Strand=Plus/Plus
Query 49 aaacgtataagaaaataaaaGAATGGGATCAAAGTGGAATAAAAGAATATTAGGGCGTCG 108
|||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 1 AAACGTATAAGAAAATAAAATAATGGGATCAAAGTGGAATAAAAGAATATTTGGGCGTCG 60
Query 109 GTGACGTGAAGCTTCGCTGCTGGGAGAAAAAAGCTCACATGCGTATTATCTCAGTCTCAG 168
|||||||||||| |||||||| |||| ||||| |||||||||||||||||||||||||||
Sbjct 61 GTGACGTGAAGCGTCGCTGCT-GGAG-AAAAATCTCACATGCGTATTATCTCAGTCTCAG 118
Query 169 CTATATTTAGAACAACAACACATGTCTGAACACATTACAGTTCCTATATCTGTTTCGAAT 228
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 119 CTATATTTAGAACAGCAACACATGTCCGAACACATTACAGTTCCTATATCTGTTTCGAAT 178
Query 229 TCAAATCTCCTGTCC-ttttttcatata-taataa-ttcatc--ataaatatttattgat 283
|||||||| |||||| ||||||| | || ||| || ||| || || |||| ||| | |
Sbjct 179 TCAAATCTGCTGTCCTTTTTTTCCTTTATTAAAAATTTC-TCTTATTAATA-TTAAT-AC 235
Query 284 ttgattctatctcttatatatattttcGATCTCTCCT-GAAAAGAGAAAAAAGTTGGAAA 342
| ||| | | || | |||||| |||||||||||||| ||||| ||||||||||| ||||
Sbjct 236 ATAATT-T-TATC-T-TATATA-TTTCGATCTCTCCTGGAAAA-AGAAAAAAGTTAGAAA 289
Query 343 CTTCGACGAATGTGtttataaa-tctttttatt-ttc-tatctgtcttgatttagtttta 399
||||||||||||||| |||||| | ||||| || ||| | | |||||||| |||||||||
Sbjct 290 CTTCGACGAATGTGTGTATAAATTTTTTTTTTTCTTCTTCTTTGTCTTGAATTAGTTTTA 349
Query 400 tcttttttGGAATCGGTCTGAAGTTGGACAAAAGAATCCGCCATTTTCTCCTCGGTCTCT 459
| || ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 350 T-TTCTTTGGAATCGGTCTGAAATTGGACAAAATAATCCGCCATTTTCTCCTCGGTCTCT 408
Query 460 CTGCTCTTCTCTTCAGTATCGGATCTGGGTCTCCTTCGCTTTCGTTTCAAGATTATTTTG 519
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 409 CTGCTCTTCTCTTCAGTATCGGATCTGGGTCTCCTTCGCTTTCGTTTCAAGGTTATTTTG 468
Query 520 GGAGACGAGGAGGCGTTAGCTGTAATTCATTGTATACTTGCTTTGGCTATTAAAGCCGTC 579
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 469 GGAGACGAGGAGGCGTTAGCTGTAATTCATTGTTTACTTGCTTTGGCTATTAAAGCCGT- 527
Query 580 ACACaaaaaaaGTAAAAGCAACACA-CACACATAAATAGACACACTTTTTTACGTATATG 638
||||||||||| |||| || | | || || | | |||| |||| |||||||||||
Sbjct 528 -CACAAAAAAAG--AAAGTAA-A-AGCA-AC-T---CACACAC-CTTTATTACGTATATG 576
Query 639 TGTGTCTTCTTTCGTCTCTGTTGGGAATAGATCTTGTCCTAAGAGATCACTTCGAGTCTG 698
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 577 TGTGTCTTCTTTCGTCTCTATTGGGAATAGATCTTGTCCTAAGAGATCACTTCGAGTCTG 636
Query 699 ATCTAAAGTGAGAAACTTTGGTTCTTGTTTTGGTT-TTTGGAATCTTGTCTAATCTGGGG 757
|||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |
Sbjct 637 ATCTAAAGTGAGAAACTTTGGTTCTT-TTTTGGTTCTTTGGAATCTTGTCTAATCTGGTG 695
Query 758 AGAT--AATGGGAATGAGTCTCGATTTCGATGTTGATCTTGAGAAAGGAATCATAGATTG 815
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 696 AGATAGAATGGGAATGAGTCTCGATTTCGATGTTGATCTTGAGAAAGGAATCATAGATTG 755
Query 816 CGACAATGTTTATACAAAATCACCGGAGAAGCCGATGTCTCCTGATAACAAACCGGTAAT 875
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 756 CGACAATGTTTATACTAAATCACCGGAGAAGCCGATGTCTCCTGATAACAAACCGGTTAT 815
Query 876 AACCGGAGAAGAAAGTGTTGGTTCGTTAGAGAATGATACAAGTCCGGTTCAATGTGGAAT 935
|||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||
Sbjct 816 TACCGGAGAAGAAAGTGTTGGTTCGTTAGAGAATGGTGCAAGTCCAGTTCAATGTGGAAT 875
Query 936 CAATAAACCGGGATGGGGGAGAAGCGATCGGAAGGAGAAACGGAAGAAATCTGCGTCGAA 995
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 876 CAATAAACCGGGATGGGGGAGAAGCGATCGGAAGGAGAAGCGAAAGAAATCTGCGTCGAA 935
Query 996 GCCTCCTCGACCGCCGCGTGGACCGTCGCTAGACGCGGCGGATCAGAAACTTATTAGAGA 1055
|||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 936 GCCTCCACGACCGCCGCGTGGACCGTCGCTAGATGCGGCGGATCAGAAACTTATCAGAGA 995
Query 1056 GATCGCTGAATTGGCGATGTTGAAACGCGCGAGAATCGAACGTATGAGAGCTTTGAAGAA 1115
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 996 GATCGCTGAATTGGCGATGTTGAAACGCGCGAGAGTCGAACGTATGAGAGCTTTGAAGAA 1055
Query 1116 ATCAAGAGCGGCTAAAGCTGCGTCTGCCGCTTCTTCTTTAGGCAATGTATTGGCCACTCT 1175
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1056 ATCAAGAGCTGCTAAAGCTGCGTCTGCGGCTTCTTCTTTAGGCAATGTATTGGCCACTCT 1115
Query 1176 TTTCACCGCTATTTTCTTCTTTGTCCTCGTTTTCCAAGGATTGTCACCGAGAGCAGCCGG 1235
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||
Sbjct 1116 TTTCACCGCTATTTTCTTCTTTGTCCTTGTTTTTCAAGGATTGTCACCGAGAGCAGCTGG 1175
Query 1236 TAGCTCCGGGAAATCTCACTTAGTAGTCGCCGGCAAAGCCAATGGTGGTTTTGTTTCGGT 1295
||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 1176 TAGCTCCGGTAAATCTCACGTAGTAGTCGCCGGCAAAGCCAATGGTGGTTTTGTTCCGGT 1235
Query 1296 TCAATATGCGGGAAATCCGTCGGCGAGCGAACCGGATGGAGGTTATACCGGACCAGTTTT 1355
||| ||||| ||||||||||| ||||||||||||||| |||||||||||||||| |||||
Sbjct 1236 TCAGTATGCAGGAAATCCGTCTGCGAGCGAACCGGATCGAGGTTATACCGGACCGGTTTT 1295
Query 1356 AGCACAGAGACCAAATTTACTAAAACCGGTGTCCGGTTTGGAGAATGAAAAGAAGAGTTC 1415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1296 AGCACAGAGACCAAATTTACTAAAACCGGTGTCCGGTTTGGAGAATGAAAAGAAGAGTTC 1355
Query 1416 ACAGTGAAAGCGTAACGAAATGGTTAAGAATTGGACAGTTCCATACTGGTTTGCTCAAAC 1475
|||||||| | || | ||||||||||||||| |||||||||||| ||||||
Sbjct 1356 ACAGTGAA-G-GT-------T----AAGAATTGGACAGTTTCATACTGGTTTGATCAAAC 1402
Query 1476 CATTTATCGGTTTAGATTGTCGGTGAGACATGTAC-CGATAAACTTTTTGG-GAAAA-TC 1532
||||||||||||||||||||||||||| |||||| | || | | | ||||| ||
Sbjct 1403 CATTTATCGGTTTAGATTGTCGGTGAGCCATGTATTC-ATTCA-TACC-GAAGAAAAATC 1459
Query 1533 GGCTGCTTTCTCTGCGGCTGTGAAACGATAATATTATCCGATGTGGGTAAGAAAGTAGTT 1592
|||||||||||||||||||| | | ||| |||||||||||||||||||||||
Sbjct 1460 GGCTGCTTTCTCTGCGGCTG-----C--T--TAT---CCGATGTGGGTAAGAAAGTAGTT 1507
Query 1593 TTGTGTCAGTTTTTTCTTGAATAAACTGAGAGAAGTTTACAAA-TAATAAAAATCAGTGT 1651
|||||| | |||||||||| |||||||||| ||||| ||||| ||| |||| |||||||
Sbjct 1508 TTGTGTT-GATTTTTCTTGAGTAAACTGAGATAAGTT-ACAAAATAAGAAAA-TCAGTGT 1564
Query 1652 TATATTATTC 1661
||| ||||||
Sbjct 1565 TATGTTATTC 1574
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62277550575
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5