BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G17140.1

Length=339
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg318477 jgi|Araly1|318477|fgenesh1_pm.C_scaffold_3001493           527    2e-149


> Ahg318477 jgi|Araly1|318477|fgenesh1_pm.C_scaffold_3001493
Length=339

 Score =  527 bits (285),  Expect = 2e-149
 Identities = 321/339 (95%), Gaps = 0/339 (0%)
 Strand=Plus/Plus

Query  1    ATGGCTATGGTGGTGGGAGTTGCGATGGGAAATATTGCGCTTGGGGCCGAAACGGTCGGG  60
            ||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct  1    ATGGCTATGATGGTGGGAGTTGCGATGGGAAATATTGCGCTTGGGGCTGAAACGCTCGGG  60

Query  61   CAGATCAACGAGGCCTACAAAACAAAACCAATGCTGAAAAAGCCATTAGACGAGTGTAGT  120
            |||||||| ||||| ||||| || ||||| ||||||||||||||||||||||||||||||
Sbjct  61   CAGATCAATGAGGCGTACAAGACGAAACCTATGCTGAAAAAGCCATTAGACGAGTGTAGT  120

Query  121  ATGAGATACAAAACGATCGTAGACGTTGACGTCCACACTGCCATTATATCTATCAAAGGA  180
             ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct  121  TTGAGATACAAAACGATCGTAGACGTTGACGTCCACACTGCCATTATAGCTGTCAAAGGA  180

Query  181  AACCCTAAGTTCGCTGAAGGGGCTGTTGTTGACGCCGGCGTGGAAGCTTCCATATGCGAA  240
            |||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||
Sbjct  181  AACCCTAAGTTCGCTGAAGGGGCTATTGTCGACGCCGGCGTGGAAGCTTCCATTTGCGAA  240

Query  241  GGAGGGTTTACCAAAGGCCAATCTCCGTTGACCAGTTTGACTCAGAGAATGGAAAAGATT  300
            |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct  241  GGAGGGTTTACCAAAGGCCAATCTACGTTGACCAGTTTGACTCAAAGAATGGAAAAGATT  300

Query  301  TGCGATGTGACCAGAGCCATCATCCGAATGTTGCTCTAA  339
            ||||||||||||||||||||| ||||||| |||||||||
Sbjct  301  TGCGATGTGACCAGAGCCATCGTCCGAATTTTGCTCTAA  339



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12019010535


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5