BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G17150.1
Length=641
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479186 jgi|Araly1|479186|fgenesh2_kg.3__1887__AT3G17150.1 394 4e-109
Ahg479187 jgi|Araly1|479187|fgenesh2_kg.3__1888__AT3G17152.1 261 4e-69
> Ahg479186 jgi|Araly1|479186|fgenesh2_kg.3__1887__AT3G17150.1
Length=515
Score = 394 bits (213), Expect = 4e-109
Identities = 282/315 (90%), Gaps = 5/315 (2%)
Strand=Plus/Plus
Query 90 GTCTCAACCAATTCGGTATGCTAC-GGAAC--CTAAGCCCATACAAGAACTCTGCAAATT 146
||||||||||||||||| | |||| ||| | ||||| |||||||| ||||||||||
Sbjct 3 GTCTCAACCAATTCGGTCTACTACGGGATCTAATAAGCTCATACAAGTACTCTGCAAAAG 62
Query 147 TAACATTAATCCAAGCCTCTGCGTCTCTACTCTCAATCTTGATCCTAGAAGCAAGAACTC 206
||| ||| |||| |||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 63 TAATATTTATCCCAGCCTCTGCGACTCTACTCTCAATCTTGATCCTAGAAGCAAGAATTC 122
Query 207 AAATTTACGAGAGCTTGCGTGGATCTCTATCGATGCGACTTCAAACAAAGTCAACAAAAT 266
|||| |||||| ||||||| |||||||||||| ||||||||||| ||||||||| | |
Sbjct 123 AAATCTACGAGGGCTTGCGCCGATCTCTATCGACGCGACTTCAAAAAAAGTCAACGAGTT 182
Query 267 GTTAAACTATCTCATCTCCGTCTCTAAGAACATCAAAGACCGTGAAGACTTAAAGAAGTA 326
|||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 183 GTTAAATTATCTCATTTTCGTCTCTAAGAACATCAAAGACCGTGAAGACTTAAAGAAGTA 242
Query 327 CAAAACTTGCATTGATGACTATGGCACG-GCGGCTCGTAGGTTTTTACCGGCGGCGTTGG 385
||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||
Sbjct 243 TAAAACTTGCATTGATGAGTATGGCACGAG-GGCTCGTAGGTTTTTACCGGCGGCGTTGG 301
Query 386 ATGATCTTAAAGCTG 400
||||||||||||||
Sbjct 302 CTGATCTTAAAGCTG 316
Score = 263 bits (142), Expect = 1e-69
Identities = 182/200 (91%), Gaps = 8/200 (4%)
Strand=Plus/Plus
Query 435 TGTTGTGTCGATACCCGATCATTGTGAGGCGCAATTCGGTGGGAGTTCACCGTTGACGGG 494
||||||||||||||| |||||||||||||||||||||| ||| | ||| |||||||| ||
Sbjct 321 TGTTGTGTCGATACCTGATCATTGTGAGGCGCAATTCGCTGGAATTTCGCCGTTGACCGG 380
Query 495 ACGTAACAAAGCCACT-CATGATATCGCTAATATGACTGCTGACATCAT-AAGATATCTT 552
||||||||||||| | |||||||||||| ||||||||||||||||||| || |||||||
Sbjct 381 ACGTAACAAAGCC-GTCCATGATATCGCTTATATGACTGCTGACATCATCAA-ATATCTT 438
Query 553 TTTGGCAATAATTAATAAGTTTTTAGTCTTGTTCAAAGTACAATCGAGTAACGCATAATG 612
|||| ||||||||||||| |||||||||||||||||||||||||||||||||| | | |
Sbjct 439 TTTGTCAATAATTAATAAATTTTTAGTCTTGTTCAAAGTACAATCGAGTAACG-A-A-T- 494
Query 613 AAGAATAAGATATTTATTTC 632
||||||||||||||||||||
Sbjct 495 AAGAATAAGATATTTATTTC 514
> Ahg479187 jgi|Araly1|479187|fgenesh2_kg.3__1888__AT3G17152.1
Length=589
Score = 261 bits (141), Expect = 4e-69
Identities = 402/523 (77%), Gaps = 37/523 (7%)
Strand=Plus/Plus
Query 37 ATGAAATTATTCTCTATTTTTGTCGTATTTATGCAAATCCAAGTAGCATTGTCGTCTCAA 96
||||| |||||| || |||||||| | ||||| ||||||||| |||| | | |||||||
Sbjct 17 ATGAACTTATTCGCTGTTTTTGTCATGTTTATCCAAATCCAAATAGC-CT-T-GTCTCAA 73
Query 97 CCAATTCGGTATGCTACGGAACCTAAGCC-CATACAAGAACTCTGCAAATTTAA-CATTA 154
|||||| || | || ||| | |||| || | ||| ||||||||||| || | ||
Sbjct 74 GCAATTCAGTCTCCTCCGGGATCTAA-CCTTGTTCAACAACTCTGCAAAAGAAACCGTT- 131
Query 155 ATCCAAG-CCTCTGCGTCTCTACTCTCAATCTTGATCCTAGAAGCAAGAAC-TCAAATTT 212
|| |||| ||| ||| ||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 132 AT-CAAGCCCTATGCATCTCTACTCTCAATCTTGATCCTAGAAGCAA-AACCTCAAATTT 189
Query 213 ACGAGAGCTTGCGTGGATCTCTATCGATGCGACTTCAAACAAAGTCAACAAAATGTTAA- 271
|| || |||||||| ||||||| ||||||| || |||| ||| ||||| | |||||
Sbjct 190 ACAAGGGCTTGCGTCGATCTCTCTCGATGCTACGACAAAGAAATTCAACGTGACGTTAAC 249
Query 272 ACTATCTCATCTCCGTCTCTAA-GAACATCAAA-GACCGTGAAGACTTAAAGA-AGTACA 328
| ||||| ||||| ||| |||| ||| ||| | | ||||||||| || ||| | |||
Sbjct 250 A-TATCTTATCTCTGTC-CTAAAGAATGTCACACG-CCGTGAAGAATTTGAGACA-TACG 305
Query 329 AAACTTGCATTGATGACTATGGCACGGCGGCTCG-TAGGTTTTTACCGGCGGCGTTGGAT 387
||||||||| || || || || |||||| | | |||||||||||| |||| | ||| |
Sbjct 306 GAACTTGCATCGAGGAGTACGGTGCGGCGGTT-GATAGGTTTTTACCAGCGGTGGTGGCT 364
Query 388 GATCTTAAAG-CTGG-GTTCTTTTCTCTAG-CGAAGTCTGATATGGAAAGT-GTTGTGTC 443
||||| |||| | | | | |||| || | | |||||| ||| |||| |||||| |
Sbjct 365 GATCT-AAAGGC-GAAGAAATATTCTG-AGGCTATGTCTGAAATG-AAAGACGTTGTGGC 420
Query 444 GATACCC-GATCATTGTGAGG-CGCAATTCGGTGGG-AGTTCACCGTTGACGGGACGTAA 500
|| | || | | ||||||||| | || |||| ||| | | | |||||||| | ||||||
Sbjct 421 GA-AGCCAGGTTATTGTGAGGAC-CAGTTCGCCGGGCAAT-CTCCGTTGACCGCACGTAA 477
Query 501 CAAAGCCACTC-ATGATATCGCTAATATGACTGCTGACATCAT 542
||||||| || |||||||||| |||||||||||| ||||||
Sbjct 478 CAAAGCCG-TCCATGATATCGCCGATATGACTGCTGGCATCAT 519
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23483716872
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5