BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G17152.1
Length=623
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479187 jgi|Araly1|479187|fgenesh2_kg.3__1888__AT3G17152.1 883 0.0
> Ahg479187 jgi|Araly1|479187|fgenesh2_kg.3__1888__AT3G17152.1
Length=589
Score = 883 bits (478), Expect = 0.0
Identities = 556/593 (94%), Gaps = 7/593 (1%)
Strand=Plus/Plus
Query 22 CAAAATGAAT-ATTTACAT-ATACTTATTCGCTATTTTTGTCGTGCTTAGCCAAATCCAA 79
||| |||||| |||| ||| | ||||||||||| |||||||| || ||| ||||||||||
Sbjct 1 CAAGATGAATAATTT-CATGA-ACTTATTCGCTGTTTTTGTCATGTTTATCCAAATCCAA 58
Query 80 ATAGCCTTGTCACAAACAATTCAGTCTCCTCCGGGATCTAGCCTTGTACAACGACTCTGC 139
||||||||||| ||| |||||||||||||||||||||||| |||||| |||| |||||||
Sbjct 59 ATAGCCTTGTCTCAAGCAATTCAGTCTCCTCCGGGATCTAACCTTGTTCAACAACTCTGC 118
Query 140 AAAAGAAACCGTTACCAAGCCCTATGCATCTCTACTCTCAATGTTGATCCTAGAAGCAAA 199
|||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 119 AAAAGAAACCGTTATCAAGCCCTATGCATCTCTACTCTCAATCTTGATCCTAGAAGCAAA 178
Query 200 ACCTCAAATCTACAAGGGCTTGCGTCGATCTCTCTCGATGCTACGACAAAGAAATTCAAC 259
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 ACCTCAAATTTACAAGGGCTTGCGTCGATCTCTCTCGATGCTACGACAAAGAAATTCAAC 238
Query 260 GTGACGTTAACATAT-TATATCTCTGTCCTAAAGAATGTCAGAGGCCGCGTAGACTTTGA 318
||||||||||||||| | ||||||||||||||||||||||| | |||| | ||| |||||
Sbjct 239 GTGACGTTAACATATCT-TATCTCTGTCCTAAAGAATGTCACACGCCGTGAAGAATTTGA 297
Query 319 GAGATACGGAACTTGCATCGAGGAGTATGGTGCGGCGGTTGATAGGTTTTTACCGGCGGT 378
|| |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 298 GACATACGGAACTTGCATCGAGGAGTACGGTGCGGCGGTTGATAGGTTTTTACCAGCGGT 357
Query 379 GAAGGCTGATCTAAAGGCGAAGAAATATCCTGAGGCTATGTCTGAAATGAAAGACGTTGT 438
| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 358 GGTGGCTGATCTAAAGGCGAAGAAATATTCTGAGGCTATGTCTGAAATGAAAGACGTTGT 417
Query 439 GGCGAAGCCAGGTTATTGTGAGGACCAGTTCGCCGGGGAATCTCCGGTGACGGCACGTAA 498
||||||||||||||||||||||||||||||||||||| |||||||| |||| ||||||||
Sbjct 418 GGCGAAGCCAGGTTATTGTGAGGACCAGTTCGCCGGGCAATCTCCGTTGACCGCACGTAA 477
Query 499 CAAAGCCGTCCATGATATCGCCGATATGACTGCTGACATCATCAAAACGTTGTGAAATGT 558
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 478 CAAAGCCGTCCATGATATCGCCGATATGACTGCTGGCATCATCAAAACGTTGTGAAATAT 537
Query 559 CAACTAATTaaaaaaaaTTCAATGTTCAACGAGAAATGAATAACATATTTTTA 611
|||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 538 CAACTAATTAAAAAAA-TTCAATGTTCAACGAGAAATGAATAAGATATTTTTA 589
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22797504366
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5