BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G17155.1 Length=410 Score E Sequences producing significant alignments: (Bits) Value Ahg904671 jgi|Araly1|904671|Al_scaffold_0003_1799 316 6e-86 > Ahg904671 jgi|Araly1|904671|Al_scaffold_0003_1799 Length=243 Score = 316 bits (171), Expect = 6e-86 Identities = 221/245 (90%), Gaps = 4/245 (2%) Strand=Plus/Plus Query 49 ATGGGTAGTACAAAAACTTTGGTGACTTGTTTCCTTACGATAATACTTGCAGTTTCGTTG 108 |||||| |||| |||||||||||||||||||||||| |||||| ||||| |||||| Sbjct 1 ATGGGTTGTACGAAAACTTTGGTGACTTGTTTCCTTGTAATAATAGTTGCAACTTCGTTC 60 Query 109 TCTAACCACAACGTTTTGGCTAT-AGATGCAGGGATCAAAGG-TTTCGATACTGACCACT 166 ||||||||||| ||||||||| | ||||||||||||| |||| |||| | | |||| ||| Sbjct 61 TCTAACCACAAAGTTTTGGCT-TCAGATGCAGGGATCGAAGGTTTTC-AAATTGACAACT 118 Query 167 GCGATACTAGGTGTTACGGACGAGATGAATGTATGAACTACTGTATTAAAGCTGGATTCC 226 || |||||||||||||||| || ||||||||||||||||||||||||| ||||||||| | Sbjct 119 GCAATACTAGGTGTTACGGGCGGGATGAATGTATGAACTACTGTATTAGAGCTGGATTTC 178 Query 227 CAAAAGGTGGACAGTGTGGTTCTCTTTGTATTCCATGTGGTTTCAAATGTTGTTGCCAAA 286 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 179 CAAAAGGTGGACAGTGTGGGTCTCTTTGTATTCCATGTGGTTTCAAATGTTGTTGCCAAA 238 Query 287 AGTAA 291 ||||| Sbjct 239 AGTAA 243 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 14728057354 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5