BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G17155.1
Length=410
Score E
Sequences producing significant alignments: (Bits) Value
Ahg904671 jgi|Araly1|904671|Al_scaffold_0003_1799 316 6e-86
> Ahg904671 jgi|Araly1|904671|Al_scaffold_0003_1799
Length=243
Score = 316 bits (171), Expect = 6e-86
Identities = 221/245 (90%), Gaps = 4/245 (2%)
Strand=Plus/Plus
Query 49 ATGGGTAGTACAAAAACTTTGGTGACTTGTTTCCTTACGATAATACTTGCAGTTTCGTTG 108
|||||| |||| |||||||||||||||||||||||| |||||| ||||| ||||||
Sbjct 1 ATGGGTTGTACGAAAACTTTGGTGACTTGTTTCCTTGTAATAATAGTTGCAACTTCGTTC 60
Query 109 TCTAACCACAACGTTTTGGCTAT-AGATGCAGGGATCAAAGG-TTTCGATACTGACCACT 166
||||||||||| ||||||||| | ||||||||||||| |||| |||| | | |||| |||
Sbjct 61 TCTAACCACAAAGTTTTGGCT-TCAGATGCAGGGATCGAAGGTTTTC-AAATTGACAACT 118
Query 167 GCGATACTAGGTGTTACGGACGAGATGAATGTATGAACTACTGTATTAAAGCTGGATTCC 226
|| |||||||||||||||| || ||||||||||||||||||||||||| ||||||||| |
Sbjct 119 GCAATACTAGGTGTTACGGGCGGGATGAATGTATGAACTACTGTATTAGAGCTGGATTTC 178
Query 227 CAAAAGGTGGACAGTGTGGTTCTCTTTGTATTCCATGTGGTTTCAAATGTTGTTGCCAAA 286
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 179 CAAAAGGTGGACAGTGTGGGTCTCTTTGTATTCCATGTGGTTTCAAATGTTGTTGCCAAA 238
Query 287 AGTAA 291
|||||
Sbjct 239 AGTAA 243
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 14728057354
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5