BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G17160.1
Length=779
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479188 jgi|Araly1|479188|fgenesh2_kg.3__1889__AT3G17160.1 1066 0.0
> Ahg479188 jgi|Araly1|479188|fgenesh2_kg.3__1889__AT3G17160.1
Length=745
Score = 1066 bits (577), Expect = 0.0
Identities = 705/763 (92%), Gaps = 23/763 (3%)
Strand=Plus/Plus
Query 19 ACACGAAAATCTCTGAAAGTCTTTTTGTTTGAAGAAGATGACGCATGTTGAAGATGATAA 78
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ACACGAAAATCTCTGAAAATCTTTTTGTTTGAAGAAGATGACGCATGTTGAAGATGATAA 60
Query 79 GGAATTCAAGGAGAAACCTTTGGTTCAGGTTCTGAGCGACGACGACAGTGAAGTGAAGGA 138
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GGAATTCAAGGAGGAACCTTTGGTTCAGGTTCTGAGCGACGACGACAGTGAAGTGAAGGA 120
Query 139 AGCCAAAGACGGAGGAGGTGAAGAAGTTACCGGCGGCGACGGTGAAGGAGAGGCTAATGT 198
| |||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 121 AACCAAAGAC---GGAGGTGAAGAAATTACCGGCGGCGACGGTGAAGGAGAGGCTAACGT 177
Query 199 AGAAGAGGAAGACGACGAAGCAGAAAATGAAGACgatgatgatgatgatgatgatgatga 258
||||||||||||||| || || || |||| |||||||| ||||||||||||||||||||
Sbjct 178 AGAAGAGGAAGACGATGACGCTGATGATGATGACGATGACGATGATGATGATGATGATGA 237
Query 259 tgaCGACGACGAGGACGAGGACGATGAAGAA-G-G--GGAGGAGGATCTTGGGACAGAGT 314
||||| ||||| || | || || ||| || | | |||||||||||||||||||||||
Sbjct 238 CGACGAGGACGATGA--A-GAAGA-GAAAAACGTGCAGGAGGAGGATCTTGGGACAGAGT 293
Query 315 ACCTAGTGAGGCCGGTTGGTGAGGTTGAAGATGAGGATGATGCAAGTGATTTTGACCCTG 374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 294 ACCTAGTGAGGCCGGTTGGTGAGGTTGAAGATGAGGATGATGCAAGTGATTTTGACCCTG 353
Query 375 AGGAGAATGGCTTGgatgaagaagaaggtgatgaagagattgaagaagatgatgttgatg 434
||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 354 AGGAGAATGGCGTGGATGAAGAAGACGGTGATGAAGAGATTGAAGAAGACGATGTTGATG 413
Query 435 aGGACATCAGCTTGAGTGCTGGCAAATCTGAGCCTCTGTCCAAGAGGAAGAGGGTTGCTA 494
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 414 AGGACATCAGCTTGAGTGCTGGCAAATCTGAGCCTCTATCCAAGAGGAAGAGGGTTGCTA 473
Query 495 AGGACCACAGTGAGCAAGGAGATGTCACTGGTGATAACATTAGGCCTTCTAAACGGTAGT 554
| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 474 AAGACCACAATGAGCAAGGAGATGTCACTGGTGATGACATTAGGCCTTCTAAACGGTAGT 533
Query 555 TCTTCTAACTTCGAACTGATCTCAATCCAAGAAGA-AAGTCAGAAATTGATTCGAATTCT 613
||||||||||||||||||||||||||||||||| | ||||| ||| | |||||||| |
Sbjct 534 TCTTCTAACTTCGAACTGATCTCAATCCAAGAA-ACAAGTCGGAACTGGATTCGAAAAC- 591
Query 614 CAGTATTTTGAATCATTCGTTGGGTTGATGTAGTTTTTAATCTAATGGTAGTAGTGTTGC 673
||||||| ||||||||| ||||||||||||||||||||||||||||||||| || | ||
Sbjct 592 -AGTATTT-GAATCATTCATTGGGTTGATGTAGTTTTTAATCTAATGGTAGT-GT-T-GC 646
Query 674 TTAGAGCTTAATGGATTGTTGTTTCTTCTTTATGTTCCTTGAGACTGCTTTCAAACAAGT 733
||||||||||||||||||||||||||| | |||||||||||||| |||| |||||||||
Sbjct 647 TTAGAGCTTAATGGATTGTTGTTTCTT-T--ATGTTCCTTGAGACAGCTT-CAAACAAGT 702
Query 734 TTAAGTATTCAACGCTTTTCTTTTCAAGGGAATAGTTTAGTTT 776
|||||||| |||||||||||||||||| |||| | ||||||||
Sbjct 703 TTAAGTATCCAACGCTTTTCTTTTCAAAGGAAGAATTTAGTTT 745
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28744679418
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5