BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G17170.1
Length=1125
Score E
Sequences producing significant alignments: (Bits) Value
Ahg318480 jgi|Araly1|318480|fgenesh1_pm.C_scaffold_3001496 1415 0.0
> Ahg318480 jgi|Araly1|318480|fgenesh1_pm.C_scaffold_3001496
Length=942
Score = 1415 bits (766), Expect = 0.0
Identities = 891/950 (94%), Gaps = 13/950 (1%)
Strand=Plus/Plus
Query 54 ATGGAGTCACTCCTGCACGCGTCTTCGTCTCTGGTGTCTCTGAGACCCAGAATCGACGGT 113
||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||
Sbjct 1 ATGGAGTCACTCCTGCACGCGTCTTCGTCTCTGGTGTCTCTCAGACCCAGAATTGATGGT 60
Query 114 AGAGATTCGTTCATCAACCCGTCACGCGTGTGCCTTAATCCTAGTCTCGGCCGCAGAGGA 173
|||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||
Sbjct 61 CGAGATTCGTTCATCAACCCGTCGCGCGTGTGTCTTAATCCTAGTATCGGCCGCAGAGGA 120
Query 174 TCTAAACCTCTTCCGTTGGTCGCGGCGGCGAAGAAGAAGAAAAGCAAGAAAGATGACAAT 233
|||||||||||||| || || |||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCTAAACCTCTTCCATTAGTTGCGGCGGCGAAGAAGAAGAAAAGCAAGAAAGATGACAAT 180
Query 234 CATAACTTTTCAGCTAGACCTGACGAAGCCACTGGTCCTTTTCCTGAATCCATTCTTCTC 293
|||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 181 CATAGCTTTTCAGCTAGACCTGACGAAGCCACTGGTCCTTTTCCTGAATCCGTTCTTCTC 240
Query 294 AAAGAGAAGAAGATTGATGAAGAAGGTGATCTT-CTTCCCGAGTTTGCTGATGCTGAAGA 352
|||||||| ||| ||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 241 AAAGAGAAAAAGGTTGATGAAGAAGGTGAT-TTGCTTCCCGAGTTTGCTGATGCTGAAGA 299
Query 353 AAAGGAGCTATATCAGTTTCTGGATCTTCAGCTTCAGAGTGACTTGAATGAAGAAAGGAT 412
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 AAAGGAGCTATATGAGTTTCTGGATCTTCAGCTTCAGAGTGACTTGAATGAAGAAAGGAT 359
Query 413 GAGGCACTATGAGGTGGTTTACTTGATTCATGAAAAACATGCTGAGGAGGTTGAAAGCAT 472
||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 360 GAGACACTATGAGGTGGTTTACTTGATTCATGAAAAACATGCTGAAGAGGTTGAAAACAT 419
Query 473 TAACCAGAAAGTACAAGATTACCTGAAGGAGAAGAAGGGGAAAGTTTGGAGGTTTAGTGA 532
||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 420 CAACCAGAAAGTACAAGATTTCCTGAAGGAGAAGAAGGGGAAAGTTTGGAGGTTCAGTGA 479
Query 533 TTGGGGAATGCGTAGACTGGCTTACAAAATACAGAAGGCAGAGAATGCGCACTATATACT 592
||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||
Sbjct 480 TTGGGGAATGCGTAGACTGGCATACAAAATACAGAAGGCAGAGAATGCACATTATATACT 539
Query 593 GATGAACTTTGAGATAGAGGCAAAATACTTGAACGAATTCAAGGGATTGTTAGATAGTGA 652
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 540 GATGAACTTTGAGATAGAGGCAAAATACTTGAACGAATTCAAGGGATTGCTGGATAGTGA 599
Query 653 TGAGAGGGTGATTAGGCATCTTGTGATGAAACGTGATGAGGCCATAACCGAAGACTGTCC 712
||||||||||||||||||||| ||||||||||||||||||||||| || |||||||| ||
Sbjct 600 TGAGAGGGTGATTAGGCATCTCGTGATGAAACGTGATGAGGCCATTACTGAAGACTGCCC 659
Query 713 TCCACCTCCTGAGTTTCACTCTGTCCGCGCAGGtgatgaatattatgacgatgatgaaga 772
|||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||
Sbjct 660 TCCACCTCCTGAGTTTCACTCTGTTCGGGCAGGTGATGAATATTATGATGATGATGAAGA 719
Query 773 ggaagagattgaagaa---gatgaagatgaaggtgagggtgaagatgaagaagatgctga 829
||||||| ||||| |||| |||||| ||||||||||||||||||||||||| |||
Sbjct 720 GGAAGAG---GAAGAGTTTGATGTAGATGAGGGTGAGGGTGAAGATGAAGAAGATGGTGA 776
Query 830 tAATATAGAGTACGAAGTAGATGATGATGGTAATGTCGTTATGGTGTTGTACGGagatga 889
|||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 777 TAATATAGAGTATGAAGTAGATGATGATGGTAATGTTGTTATGGTGTTGTATGGAGATGA 836
Query 890 agaagaaggagaagaagaagaagatgg-agctagtgaacaagaagaagGACAGGACAAGT 948
||||| | || ||||||||||||||| | ||||||||| |||||||||||| |||||||
Sbjct 837 AGAAG--G-AGCAGAAGAAGAAGATGGGA-CTAGTGAACCAGAAGAAGGACATGACAAGT 892
Query 949 CAACTAATGGTAGAAGAGAAACCCGGAGAACAGTTAACGTAGGAGGTTAG 998
||||||| || ||||||||||||||||||||||||||||||||||| |||
Sbjct 893 CAACTAACGGCAGAAGAGAAACCCGGAGAACAGTTAACGTAGGAGGGTAG 942
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41935208700
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5