BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G17180.1 Length=1437 Score E Sequences producing significant alignments: (Bits) Value Ahg479190 jgi|Araly1|479190|fgenesh2_kg.3__1891__AT3G17180.1 2322 0.0 > Ahg479190 jgi|Araly1|479190|fgenesh2_kg.3__1891__AT3G17180.1 Length=1437 Score = 2322 bits (1257), Expect = 0.0 Identities = 1378/1438 (96%), Gaps = 2/1438 (0%) Strand=Plus/Plus Query 1 ATGAATTTGACACTTCCGATGaaaaaacaaaaaTTTCTGCTAATCATCTCATTATTGATA 60 ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1 ATGAATTTGACTCTTCCGATGAAAAAACAAAATTTTCTGCTAATCATCTCATTATTGATA 60 Query 61 TTATTATCATTACTTCATCAAGATTATCACATTGAAGCTCAAAATTCAGACAAAGTAGTC 120 ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| Sbjct 61 TTATTATCATTACTTCATCAAGATTATCACATTGACGCTCAGAATTCAGACAAAGTAGTG 120 Query 121 AATCTTCCTGAACAACCACTGAACCCAAAGATCTCTCATTTCTCAGGTTATGTCAACGTC 180 ||||||||| |||||||| |||| || ||||||||||| ||||||| ||| ||||||| Sbjct 121 AATCTTCCTCAACAACCATTGAATCCTAAGATCTCTCACGTCTCAGGATATATCAACGTG 180 Query 181 AATCAAGAAAATACACGATCACTCTTCTTTTGGTTCTTCGAAGCATTGTCTGAATCTCCT 240 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 181 AATCAAGAAAATACACGATCACTCTTCTTTTGGTTCTTCGAAGCCTTGTCTGAATCTCCT 240 Query 241 TCAACAAGACCTCTAGTTCTCTGGCTCAATGGAGGTCCTGGATGTTCATCGATTGGATAT 300 ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| Sbjct 241 TCAACAAGACCTCTAGTTCTCTGGCTCAACGGAGGTCCTGGATGTTCATCTATTGGATAT 300 Query 301 GGAGCAGCATCTGAATTAGGACCTTTTCGTGTTGTTGAAAATGGGACAAGTCTTAGTTTC 360 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 301 GGAGCAGCATCTGAATTAGGACCTTTTCGTGTTGTTGAAAATGGGACAAGCCTTAGTTTC 360 Query 361 AATCAATACTCTTGGGTCCAAGAAGCGAATATGTTGTTTTTAGAATCACCAGTCGGAGTA 420 |||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||| Sbjct 361 AATCAATATTCTTGGGTCCAAGAAGCGAATATATTGTTTTTAGAATCACCAGTTGGAGTA 420 Query 421 GGGTTTTCGTACACGAACTCATCATCTGATTTGGAAAACCTCAACGACGCTTTCGTTGCG 480 ||||||||||||||||||||||| || |||||||| |||||||||||||||||||||||| Sbjct 421 GGGTTTTCGTACACGAACTCATCTTCCGATTTGGACAACCTCAACGACGCTTTCGTTGCG 480 Query 481 GAAGATGCATACAACTTCATGGTTGCTTGGTTTGCAAGGTATCCTCAGTATAAGTCTCGT 540 ||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||| Sbjct 481 GAAGATGCATACAACTTTATGGTTGCTTGGTTTGCAAGGTATCCCCAATATAAGTCTCGT 540 Query 541 GATTTCTTCATAGCTGGTGAAAGCTATGCCGGTCACTACTCACCTCAGCTAGCCGAGCTT 600 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 541 GATTTCTTCATAGCTGGTGAAAGCTATGCCGGTCACTACGCACCTCAGCTAGCCGAGCTT 600 Query 601 ATATACGATCGGAACAAAGTTCAGCCAAAGGACTCCTTCATTAATCTCAAAGGCTTCATC 660 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 601 ATATACGATCGGAACAAAGTTAAGCCAAAGGACTCCTTCATTAATCTCAAAGGCTTCATC 660 Query 661 GTGGGAAATCCATTGACGGACGATGAGTACGATAACAAAGGGATTCTAGAATACGCATGG 720 ||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||| Sbjct 661 GTGGGAAATCCGTTGACGGATGATGAATACGATAACAAAGGGATTCTAGAATACGCATGG 720 Query 721 AGCCATGCAGTGATCTCTGATCATCTTTACGACTCCGCAAAACATAACTGCGACTTCAAG 780 ||||||||||||||||||||| |||| |||||||||||||||| |||||||||||||||| Sbjct 721 AGCCATGCAGTGATCTCTGATGATCTCTACGACTCCGCAAAACGTAACTGCGACTTCAAG 780 Query 781 TCTTCGAACTGGTCAGAGCCATGCAACGTTGCTATGAACACAGTGTTCACAAAATACAAA 840 |||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||| Sbjct 781 TCTTCGAATTGGTCAGAGCCCTGCAACGTTGCCATGAACACAGTGTTCACAAAATACAAA 840 Query 841 GAGATTGATATTTATAACATATATGCTCCCAAGTGCATATCTAATAGCTCATCAGGAGCT 900 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 841 GAGATTGATATTTATAACATATATGCTCCCAAGTGCATAGCTAATAGCTCATCAGGAGCT 900 Query 901 TCCTACTTAGGTTTCGGAGTCAATGATAAGTCTCCGGCGGTTAAAGACTGGTTCAAGAGA 960 |||||||||| || |||||||||| |||||||||||||||| |||||||||||||||||| Sbjct 901 TCCTACTTAGATTCCGGAGTCAATCATAAGTCTCCGGCGGTCAAAGACTGGTTCAAGAGA 960 Query 961 GTGAGATGGTTTGAAGGATACGATCCTTGTTACTCTAATTACGCTGAAGAATATTTCAAT 1020 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 961 GTGAGATGGTTTGAAGGATACGATCCTTGTTACTCTAATTACGCTGAAGAATATTTCAAT 1020 Query 1021 AGAGTCGATGTTCGATTGTCTCTTCATGCTACTACACGAAATGTAGCAAGGTGGAAAGTT 1080 || ||||||||||||| |||||||||||| |||||||||||||||||||| ||||||||| Sbjct 1021 AGGGTCGATGTTCGATCGTCTCTTCATGCCACTACACGAAATGTAGCAAGATGGAAAGTT 1080 Query 1081 TGCAATGATTCGATATTGCAAACGTACCATTTTACAGTCTCCTCAATGTTGCCTACTTAT 1140 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1081 TGCAATGATTCGATATTGCAAACGTACCATTTTACAGTCTCCTCAATGTTGCCTACATAT 1140 Query 1141 AGTAAGCTCATCAAAGCTGGCCTCAAGATATGGGTTTATAGTGGAGATGCCGACGGGAGA 1200 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1141 AGTAAGCTCATCAAAGCTGGCCTCAAGATATGGGTTTATAGTGGAGATGCCGACGGGAGA 1200 Query 1201 GTCCCGGTGATCGGAAGTCGGTATTGTGTTGAAGCT-TTAGGGATTTCCGTCAAATCGGA 1259 ||||| || ||||||||||||||||||||||||||| || ||| ||||||||||||| || Sbjct 1201 GTCCCAGTTATCGGAAGTCGGTATTGTGTTGAAGCTCTT-GGGCTTTCCGTCAAATCCGA 1259 Query 1260 GTGGCGTTCTTGGTTCCACAATCATCAGGTGGGAGGGAGAATAACGGAGTACGAGGGAGG 1319 |||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||| Sbjct 1260 ATGGCGTTCTTGGTTCCACAATCATCAGGTGGGAGGGAGGATAACAGAGTACGAAGGAGG 1319 Query 1320 GTTAACGTTCGTAACGGTGAGAGGAGCTGGACACTTGGTTCCTCTCAATAAACCTGAAGA 1379 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1320 GTTAACGTTCGTAACGGTGAGAGGAGCTGGACACTTGGTTCCTCTCAATAAACCTGAAGA 1379 Query 1380 AGCTCTCGCGCTTTTCCGGTCCTTCCTTAACGGCCAAGAACTTCCGTCAAGCCCCTAG 1437 ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| Sbjct 1380 AGCTCTCGCGCTTTTCCGGTCCTTCCTTAACGGCCAAGAACTTCCGTCACGGCCCTAG 1437 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 53745335695 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5