BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G17180.1
Length=1437
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479190 jgi|Araly1|479190|fgenesh2_kg.3__1891__AT3G17180.1 2322 0.0
> Ahg479190 jgi|Araly1|479190|fgenesh2_kg.3__1891__AT3G17180.1
Length=1437
Score = 2322 bits (1257), Expect = 0.0
Identities = 1378/1438 (96%), Gaps = 2/1438 (0%)
Strand=Plus/Plus
Query 1 ATGAATTTGACACTTCCGATGaaaaaacaaaaaTTTCTGCTAATCATCTCATTATTGATA 60
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 ATGAATTTGACTCTTCCGATGAAAAAACAAAATTTTCTGCTAATCATCTCATTATTGATA 60
Query 61 TTATTATCATTACTTCATCAAGATTATCACATTGAAGCTCAAAATTCAGACAAAGTAGTC 120
||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 61 TTATTATCATTACTTCATCAAGATTATCACATTGACGCTCAGAATTCAGACAAAGTAGTG 120
Query 121 AATCTTCCTGAACAACCACTGAACCCAAAGATCTCTCATTTCTCAGGTTATGTCAACGTC 180
||||||||| |||||||| |||| || ||||||||||| ||||||| ||| |||||||
Sbjct 121 AATCTTCCTCAACAACCATTGAATCCTAAGATCTCTCACGTCTCAGGATATATCAACGTG 180
Query 181 AATCAAGAAAATACACGATCACTCTTCTTTTGGTTCTTCGAAGCATTGTCTGAATCTCCT 240
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 181 AATCAAGAAAATACACGATCACTCTTCTTTTGGTTCTTCGAAGCCTTGTCTGAATCTCCT 240
Query 241 TCAACAAGACCTCTAGTTCTCTGGCTCAATGGAGGTCCTGGATGTTCATCGATTGGATAT 300
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 241 TCAACAAGACCTCTAGTTCTCTGGCTCAACGGAGGTCCTGGATGTTCATCTATTGGATAT 300
Query 301 GGAGCAGCATCTGAATTAGGACCTTTTCGTGTTGTTGAAAATGGGACAAGTCTTAGTTTC 360
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 301 GGAGCAGCATCTGAATTAGGACCTTTTCGTGTTGTTGAAAATGGGACAAGCCTTAGTTTC 360
Query 361 AATCAATACTCTTGGGTCCAAGAAGCGAATATGTTGTTTTTAGAATCACCAGTCGGAGTA 420
|||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 361 AATCAATATTCTTGGGTCCAAGAAGCGAATATATTGTTTTTAGAATCACCAGTTGGAGTA 420
Query 421 GGGTTTTCGTACACGAACTCATCATCTGATTTGGAAAACCTCAACGACGCTTTCGTTGCG 480
||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||
Sbjct 421 GGGTTTTCGTACACGAACTCATCTTCCGATTTGGACAACCTCAACGACGCTTTCGTTGCG 480
Query 481 GAAGATGCATACAACTTCATGGTTGCTTGGTTTGCAAGGTATCCTCAGTATAAGTCTCGT 540
||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||
Sbjct 481 GAAGATGCATACAACTTTATGGTTGCTTGGTTTGCAAGGTATCCCCAATATAAGTCTCGT 540
Query 541 GATTTCTTCATAGCTGGTGAAAGCTATGCCGGTCACTACTCACCTCAGCTAGCCGAGCTT 600
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 541 GATTTCTTCATAGCTGGTGAAAGCTATGCCGGTCACTACGCACCTCAGCTAGCCGAGCTT 600
Query 601 ATATACGATCGGAACAAAGTTCAGCCAAAGGACTCCTTCATTAATCTCAAAGGCTTCATC 660
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 601 ATATACGATCGGAACAAAGTTAAGCCAAAGGACTCCTTCATTAATCTCAAAGGCTTCATC 660
Query 661 GTGGGAAATCCATTGACGGACGATGAGTACGATAACAAAGGGATTCTAGAATACGCATGG 720
||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 661 GTGGGAAATCCGTTGACGGATGATGAATACGATAACAAAGGGATTCTAGAATACGCATGG 720
Query 721 AGCCATGCAGTGATCTCTGATCATCTTTACGACTCCGCAAAACATAACTGCGACTTCAAG 780
||||||||||||||||||||| |||| |||||||||||||||| ||||||||||||||||
Sbjct 721 AGCCATGCAGTGATCTCTGATGATCTCTACGACTCCGCAAAACGTAACTGCGACTTCAAG 780
Query 781 TCTTCGAACTGGTCAGAGCCATGCAACGTTGCTATGAACACAGTGTTCACAAAATACAAA 840
|||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 781 TCTTCGAATTGGTCAGAGCCCTGCAACGTTGCCATGAACACAGTGTTCACAAAATACAAA 840
Query 841 GAGATTGATATTTATAACATATATGCTCCCAAGTGCATATCTAATAGCTCATCAGGAGCT 900
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 841 GAGATTGATATTTATAACATATATGCTCCCAAGTGCATAGCTAATAGCTCATCAGGAGCT 900
Query 901 TCCTACTTAGGTTTCGGAGTCAATGATAAGTCTCCGGCGGTTAAAGACTGGTTCAAGAGA 960
|||||||||| || |||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 901 TCCTACTTAGATTCCGGAGTCAATCATAAGTCTCCGGCGGTCAAAGACTGGTTCAAGAGA 960
Query 961 GTGAGATGGTTTGAAGGATACGATCCTTGTTACTCTAATTACGCTGAAGAATATTTCAAT 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 GTGAGATGGTTTGAAGGATACGATCCTTGTTACTCTAATTACGCTGAAGAATATTTCAAT 1020
Query 1021 AGAGTCGATGTTCGATTGTCTCTTCATGCTACTACACGAAATGTAGCAAGGTGGAAAGTT 1080
|| ||||||||||||| |||||||||||| |||||||||||||||||||| |||||||||
Sbjct 1021 AGGGTCGATGTTCGATCGTCTCTTCATGCCACTACACGAAATGTAGCAAGATGGAAAGTT 1080
Query 1081 TGCAATGATTCGATATTGCAAACGTACCATTTTACAGTCTCCTCAATGTTGCCTACTTAT 1140
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1081 TGCAATGATTCGATATTGCAAACGTACCATTTTACAGTCTCCTCAATGTTGCCTACATAT 1140
Query 1141 AGTAAGCTCATCAAAGCTGGCCTCAAGATATGGGTTTATAGTGGAGATGCCGACGGGAGA 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 AGTAAGCTCATCAAAGCTGGCCTCAAGATATGGGTTTATAGTGGAGATGCCGACGGGAGA 1200
Query 1201 GTCCCGGTGATCGGAAGTCGGTATTGTGTTGAAGCT-TTAGGGATTTCCGTCAAATCGGA 1259
||||| || ||||||||||||||||||||||||||| || ||| ||||||||||||| ||
Sbjct 1201 GTCCCAGTTATCGGAAGTCGGTATTGTGTTGAAGCTCTT-GGGCTTTCCGTCAAATCCGA 1259
Query 1260 GTGGCGTTCTTGGTTCCACAATCATCAGGTGGGAGGGAGAATAACGGAGTACGAGGGAGG 1319
|||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||
Sbjct 1260 ATGGCGTTCTTGGTTCCACAATCATCAGGTGGGAGGGAGGATAACAGAGTACGAAGGAGG 1319
Query 1320 GTTAACGTTCGTAACGGTGAGAGGAGCTGGACACTTGGTTCCTCTCAATAAACCTGAAGA 1379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 GTTAACGTTCGTAACGGTGAGAGGAGCTGGACACTTGGTTCCTCTCAATAAACCTGAAGA 1379
Query 1380 AGCTCTCGCGCTTTTCCGGTCCTTCCTTAACGGCCAAGAACTTCCGTCAAGCCCCTAG 1437
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 1380 AGCTCTCGCGCTTTTCCGGTCCTTCCTTAACGGCCAAGAACTTCCGTCACGGCCCTAG 1437
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53745335695
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5