BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G17185.1

Length=555
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg904675 jgi|Araly1|904675|Al_scaffold_0003_1803                    178    4e-44


> Ahg904675 jgi|Araly1|904675|Al_scaffold_0003_1803
Length=153

 Score =  178 bits (96),  Expect = 4e-44
 Identities = 132/149 (89%), Gaps = 4/149 (3%)
 Strand=Plus/Plus

Query  58   ATGAAAGAGAGAGAAGAGCTCCCATGGATGAAATTAGCGAGACCGAA-GTTTCTCCAAGG  116
            ||| |||||||||||||||||||||||||||||  |  ||||| ||| |||| |||||||
Sbjct  1    ATGGAAGAGAGAGAAGAGCTCCCATGGATGAAAAGATTGAGAC-GAAAGTTTATCCAAGG  59

Query  117  CATTAAGGAAAACATAACCTCC-GTGATGCATAGAGATTATTGGATCCGCTGTGCTGAGA  175
            || |||| ||||||||||| |  |||||||||||||||||||||||| ||||||| ||||
Sbjct  60   CAATAAGAAAAACATAACC-CATGTGATGCATAGAGATTATTGGATCTGCTGTGCAGAGA  118

Query  176  CATTGAGTTTTTCTTCGGCATTCCAGTTT  204
            |||||||||||||||||| | ||||||||
Sbjct  119  CATTGAGTTTTTCTTCGGAAATCCAGTTT  147



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20260617759


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5