BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G17203.1
Length=2068
Score E
Sequences producing significant alignments: (Bits) Value
Ahg904679 jgi|Araly1|904679|Al_scaffold_0003_1807 534 8e-151
Ahg952609 jgi|Araly1|952609|scaffold_94700001.1 353 2e-96
> Ahg904679 jgi|Araly1|904679|Al_scaffold_0003_1807
Length=1008
Score = 534 bits (289), Expect = 8e-151
Identities = 343/370 (93%), Gaps = 0/370 (0%)
Strand=Plus/Plus
Query 1226 GCTCTGCGGTGACGTGTTACGTAGAAGCAATTAAGCAGTTGGCGTGTGAGATCTTAGACC 1285
|||| || ||||| ||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 368 GCTCCGCAGTGACTTGTTACGTAGAAGCAGTTAAGCAGTTGGCGTGTGAGATCTTAGATC 427
Query 1286 TCACGGCTGAAGGACTACGGCTCCCACCTCATACCTTCAGCAAGTTAATCAGAGCCGTTG 1345
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 428 TCACGGCTGAAGGACTTCGGCTCCCACCTCATACCTTCAGCAAATTAATCAGAGCCGTTG 487
Query 1346 ATAGCGACTCAGTTCTCAGGCTTAATCACTACCCATCATCCAATCAATTCCTTAGTGGAG 1405
|||||||||||||||| ||| |||||||||||||||| ||| ||||||| ||||||||||
Sbjct 488 ATAGCGACTCAGTTCTTAGGTTTAATCACTACCCATCGTCCGATCAATTTCTTAGTGGAG 547
Query 1406 CCAAGGTTTCTGATATGTCTGTGTCATTACCGAGAGTTGGCTTCGGGGAACACACAGACC 1465
|||| | ||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 548 CCAACCTCTCTGATAAGTCTGTGTCATTACCGAGAGTTGGCTTCGGGGAGCACACAGACC 607
Query 1466 CTCAGATCTTGACAGTCCTTAGATCCAATAGAGTAGGGGGCCTCCAGGTGGCATTCCCTG 1525
|||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||
Sbjct 608 CTCAGATCTTGACAGTTCTCAGATCCAACGGAGTAGGGGGCCTCCAGGTGGCATTCCCTG 667
Query 1526 ACGGAAGGTGGGTCTCTGTCTCCCCTGACCCTTCAACCTTTTGCGTAAACGTTGGCGATC 1585
||||||| |||||||||||||| ||||||||||| | |||||||||||||| |||||||
Sbjct 668 ACGGAAGATGGGTCTCTGTCTCTCCTGACCCTTCTGCTTTTTGCGTAAACGTAGGCGATC 727
Query 1586 TTTTGCAGGT 1595
||||||||||
Sbjct 728 TTTTGCAGGT 737
Score = 403 bits (218), Expect = 2e-111
Identities = 254/272 (93%), Gaps = 0/272 (0%)
Strand=Plus/Plus
Query 88 aaaGCTTGCGAGACCATTGGTTTCTTCAAAGTGGTCAACCACGGTGTTGACCCGGACGTT 147
|||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 97 AAAGCTTGCGAGTCCATTGGTTTCTTCAAAGTGGTCAACCACGGCGTTGACCCGGACGTT 156
Query 148 ATCTCCCGGTTGGAGCAAGAGTCCATAAACTTCTTTGCTAAACCTGTTCTTGAGAAGAAA 207
||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 157 ATCTCCCGGATGGAGCAAGAGTCCATAAACTTCTTCGCTAAACCGGTTCTTGAGAAGAAA 216
Query 208 TCGGTCGGATCGGTGGTTAACCGGCCTTTCGGTTATGGGCTGAAGAATATTGGGCTCAAA 267
|| |||||| ||||||| ||||||||||| || |||||| ||||| | |||||||||||
Sbjct 217 TCTGTCGGACCGGTGGTGAACCGGCCTTTTGGCTATGGGTTGAAGGACATTGGGCTCAAG 276
Query 268 GGTGATATTGGAGAGGTCGAGTATTTGCTCCTTCACACTAATCCTCTCTTCCTTTCTCAG 327
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 277 GGTGATATTGGGGAGGTCGAGTATTTGCTCCTTCACACTAATCCTCTCTTCCTTTCTCAG 336
Query 328 TTATCATTTGGTAACGATTCTACCAAGTTCGG 359
||||| | ||| ||||||||||||||||||||
Sbjct 337 TTATCGTCTGGGAACGATTCTACCAAGTTCGG 368
Score = 398 bits (215), Expect = 1e-109
Identities = 255/275 (93%), Gaps = 0/275 (0%)
Strand=Plus/Plus
Query 1794 AGGTGATGACGAATGGGAGATTCTTAAGCGTACGACACAGAGCGGTGACTACCGGACATG 1853
|||| |||||||||||||||||| |||||||||||||||| ||||||||||| |||||||
Sbjct 734 AGGTAATGACGAATGGGAGATTCCTAAGCGTACGACACAGGGCGGTGACTACAGGACATG 793
Query 1854 CAAGCAGGCTATCGATGGCGTACTTTGCCGGTCCATCCGTCCATGCAAAGATAGGCCCTA 1913
|||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 794 CAAGCAGGTTATCGATGGCATACTTTGCCGGTCCGTCCGTCCATGCAAAGATAGGCCCTC 853
Query 1914 TTCCGGGAATCATCCCGGCGGCAGAACAGCCACGGCTTTACCGGACGTTCACATGGGCTG 1973
| ||| |||| || |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 854 TCCCGACAATCGTCACGGCGGCAGATCAGCCACGGCTTTACCGGACGTTCACATGGGCTG 913
Query 1974 ACTACAAGAAGTTTGCTTACTCGCTAAGCCTTGGAGATAACCGTCTTGACATTTTCCGCT 2033
|||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 914 ACTACAAGAAGTTTGCTTACTCACTAGGCCTTGGAGATAACCGTCTTGACATTTTCCGCT 973
Query 2034 CATGTGTCGATGAGCATGATGAATTGGGCTTCTAG 2068
|| ||||||||||| | ||||| ||||||||||||
Sbjct 974 CACGTGTCGATGAGGAAGATGAGTTGGGCTTCTAG 1008
> Ahg952609 jgi|Araly1|952609|scaffold_94700001.1
Length=275
Score = 353 bits (191), Expect = 2e-96
Identities = 233/253 (92%), Gaps = 3/253 (1%)
Strand=Plus/Plus
Query 1183 ataatgAGCAACTCGTGATGATGTATGATATGTCTGTTTGACAGCTCTGCGGTGACGTGT 1242
||||||||||||| | | |||||||||| |||||||||||||||||| |||||||| |||
Sbjct 1 ATAATGAGCAACT-G-G-TGATGTATGACATGTCTGTTTGACAGCTCCGCGGTGACTTGT 57
Query 1243 TACGTAGAAGCAATTAAGCAGTTGGCGTGTGAGATCTTAGACCTCACGGCTGAAGGACTA 1302
|||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 58 TACGTAGAAGCAGTTAAGCAGTTGGCGTGTGAGATCTTAGATCTCACGGCTGAAGGACTT 117
Query 1303 CGGCTCCCACCTCATACCTTCAGCAAGTTAATCAGAGCCGTTGATAGCGACTCAGTTCTC 1362
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 118 CGGCTCCCACCTCATACCTTCAGCAAATTAATCAGAGCCGTTGATAGCGACTCAGTTCTT 177
Query 1363 AGGCTTAATCACTACCCATCATCCAATCAATTCCTTAGTGGAGCCAAGGTTTCTGATATG 1422
||| |||| ||||||||||| ||| ||||||| |||||||||||||| | ||||||| |
Sbjct 178 AGGTTTAACCACTACCCATCGTCCGATCAATTTCTTAGTGGAGCCAACCTCTCTGATAAG 237
Query 1423 TCTGTGTCATTAC 1435
|||||||||||||
Sbjct 238 TCTGTGTCATTAC 250
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77780280290
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5