BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G17210.1

Length=668
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg479193 jgi|Araly1|479193|fgenesh2_kg.3__1894__AT3G17210.1         595    1e-169


> Ahg479193 jgi|Araly1|479193|fgenesh2_kg.3__1894__AT3G17210.1
Length=476

 Score =  595 bits (322),  Expect = 1e-169
 Identities = 399/433 (92%), Gaps = 18/433 (4%)
 Strand=Plus/Plus

Query  25   AGGATCAAAAATGGAGGAAGCAAAGGGA-C-CT-GTGAAGCACGTATTGCTTGCT-AGTT  80
            |||||||||||||||||||||||||||| |  | ||||||||||||||||||||| || |
Sbjct  1    AGGATCAAAAATGGAGGAAGCAAAGGGAGCTGTGGTGAAGCACGTATTGCTTGCTAAG-T  59

Query  81   TCAAAGATGGGGTTAGTCCTGAGAAAATCGAAGAGCTCATCAAAGGTTACGCCAATCTCG  140
            |||||||||| || || ||||||||||| |||||||| ||||||||||||||||||||||
Sbjct  60   TCAAAGATGGCGTAAGCCCTGAGAAAATGGAAGAGCTTATCAAAGGTTACGCCAATCTCG  119

Query  141  TCAATCTCATCGAACCTATGAAAGCTTTCCACTGGGGAAAAGATGTGAGCATTGAGAATC  200
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  120  TCAATCTCATCGAACCTATGAAAGCTTTCCACTGGGGAGAAGATGTGAGCATTGAGAATC  179

Query  201  TGCATCAAGGTTACACACACATCTTTGAATCCACATTTGAGAGTAAAGAAGCTGTTGCAG  260
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  180  TGCATCAAGGTTACACACACATCTTTGAATCCACATTTGAGAGCAAAGAAGCTGTTGCAG  239

Query  261  AGTACATTGCTCATCCTGCTCACGTTGAATTCGCCACCATCTTCCTTGGCAGCTTGGATA  320
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  240  AGTACATTGCTCATCCTGCTCACGTTGAATTCGCCACCATCTTTCTTGGCAGCTTGGATA  299

Query  321  AAGTTTTGGTTATTGACTACAAGCCTACCTCTGTCTCTCTCTAATTATCT-T-GTAGCAG  378
            |||| ||||||||||||||||||||||||||||||||||||||||||| | | | |||||
Sbjct  300  AAGTATTGGTTATTGACTACAAGCCTACCTCTGTCTCTCTCTAATTATGTGTTGCAGCAG  359

Query  379  CATTTTCATCATTGATCTTTTT--CTCGGGTATGCATCTTGTATGTTGAATAAAGTATAT  436
            ||||||| || |||||||||||  ||||||||||  |     |||| ||||||||| |||
Sbjct  360  CATTTTCCTCTTTGATCTTTTTTTCTCGGGTATG--T-----ATGTCGAATAAAGT-TAT  411

Query  437  TCCtttt-gagtt  448
            | ||||| |||||
Sbjct  412  TTCTTTTTGAGTT  424



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24513035631


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5