BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G17220.1

Length=522
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg479194 jgi|Araly1|479194|fgenesh2_kg.3__1895__AT3G17220.1         730    0.0  


> Ahg479194 jgi|Araly1|479194|fgenesh2_kg.3__1895__AT3G17220.1
Length=467

 Score =  730 bits (395),  Expect = 0.0
 Identities = 443/467 (95%), Gaps = 0/467 (0%)
 Strand=Plus/Plus

Query  55   ATGACTGGTTCTTTGAACGCACAAGTGGCAGACATAAAAGCGATATGTGGAAAAGCGAAA  114
            |||| |||| | ||||| |||||||| |||||||||||||| || ||||| |||||||||
Sbjct  1    ATGATTGGTGCCTTGAATGCACAAGTAGCAGACATAAAAGCAATCTGTGGGAAAGCGAAA  60

Query  115  AACCAATCCTTCTGTACGAGCTACATGAAATCCAACCCAAAGACCTCAGGTGCTGATCTT  174
            |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   AACCAATCCTTCTGCACTAGCTACATGAAATCCAACCCAAAGACCTCAGGTGCTGATCTT  120

Query  175  CAAACGCTTGCAAATATCACATTTGGTTCTGCACAAACAAGTGCATCAGAAGGTTTCAGG  234
            |||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct  121  CAAACGCTAGCAAAGATCACCTTTGGTTCTGCACAAACAAGTGCATCAGAAGGTTTCAAG  180

Query  235  AAAATTCAATCTCTAGTCAAGACAGCAACCAACCCCACTATGAAGAAAGCATACACCTCA  294
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  181  AAAATTCAATCCCTAGTCAAGACAGCAACCAACCCCACTATGAAGAAAGCATACACCTCG  240

Query  295  TGTGTACAACATTATAAGAGTGCAATAAGCAGTCTCAATGATGCTAAGCAGAGCCTGGCG  354
            || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  241  TGCGTACAACATTATAAGAGTGCAATCAGCAGTCTCAATGATGCTAAGCAGAGCCTGGCG  300

Query  355  TCAGGCGATGGCAAAGGGTTGAACATTAAGGTTTCAGCAGCTATGGAAGGACCTTCAACA  414
            ||||||||||| |||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct  301  TCAGGCGATGGGAAAGGGCTGAACATTAAGGTCTCAGCAGCTATGGAAGGACCTTCAACA  360

Query  415  TGTGAACAAGACATGGCGGATTTCAAAGTTGATCCTTCAGCTGTGAAGAACAGTGGTGAT  474
            |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct  361  TGTGAACAAGACATGGCGAATTTCAAAGTAGATCCTTCAGCTGTGAAGAACAGTGGTGAT  420

Query  475  TTTCAGAATATTTGTGGCATTGTACTTGTCATCTCAAACATGATGTG  521
            ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  421  TTTCAGAATATTTGTGGCATTGTTCTTGTCATCTCAAACATGATGTG  467



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19001483322


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5