BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G17230.1
Length=1056
Score E
Sequences producing significant alignments: (Bits) Value
Ahg318486 jgi|Araly1|318486|fgenesh1_pm.C_scaffold_3001502 1395 0.0
Ahg931265 jgi|Araly1|931265|scaffold_303722.1 274 1e-72
> Ahg318486 jgi|Araly1|318486|fgenesh1_pm.C_scaffold_3001502
Length=1065
Score = 1395 bits (755), Expect = 0.0
Identities = 968/1067 (91%), Gaps = 29/1067 (3%)
Strand=Plus/Plus
Query 1 ATGGCTTATCCTTGCGTCAAAAGAAACGTATTTTCACTTCTTCCTCTTCTCGTTCTTCTA 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 ATGGCTTATCCTTGCGTCAAAAGAAACGTATTTTCACTTCTTCCTCTACTCGTTCTTCTA 60
Query 61 TCAATCACCCCTTTGTCTTCATCTTTATCTCCGAGTGACAAAATCACAAAAGATTTACTT 120
||| |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 61 TCAGTCACCCCTTTGTCTTCATCTTTGTCTCCGAGTGACAAAATCACAAAAGACTTACTT 120
Query 121 CAGC-AACTCTGCGCAAG-TCCGCACATTGACCA-CCCCTTCTGCATCACTTGGCTAACC 177
| | | |||||| | || || ||||||| || | |||||||||| |||||||||||
Sbjct 121 TA-CTACCTCTGCAC-AGAACCAAACATTGA-CAGCAGCTTCTGCATCCCTTGGCTAACC 177
Query 178 GCTGATCCTACAACATTCACCCTCGACCTACAAGGTCTTCTCGATTTAGTCTTCCAAAAG 237
||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 178 TCTGATCCAACAACATTCACTCTCGACCTACAAGGTCTTCTCGATTTGGTCTTCCAAAAG 237
Query 238 ACGCAATTGTTGGGCTATAAGAGCCTAGCGGCGATGAAAGGCGCAGTGAGAACCACT-AC 296
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |
Sbjct 238 ACGCAATTGTTGGGCTATAAGAGCCTAGCGGCGATGAAAGGCTCAGTGAGAACCA-TGCC 296
Query 297 TGATCCGACGCTCAGGA-CCTCATATGAGACTTGCGTGAGAGATTATGAAGGAGCCATTA 355
|| | ||||||||| || || ||| |||||||||||||| |||||||||| ||||||||
Sbjct 297 TGGTTCGACGCTCAAGATCC-CATTTGAGACTTGCGTGAAAGATTATGAATCAGCCATTA 355
Query 356 AAGCGATCGAGGAAGCTCAAGGGTCTGTGACCTCTAAGGCGTAC-CAGTTAGCATCTCAA 414
|| ||||||||||||||||||||| | ||||||||||||||||| | |||||||||||||
Sbjct 356 AATCGATCGAGGAAGCTCAAGGGTTTCTGACCTCTAAGGCGTACGC-GTTAGCATCTCAA 414
Query 415 GGGGCTGCTAAAGCCTTTGTTAGTATATCAGTGTGTGAAGCTCAGTTTGAAGGACGGGAT 474
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 415 GGGGCTGCTAAAGCCTTCATTAGTATATCAGTGTGTGAAGCTCAGTTTGAAGGACGGGCT 474
Query 475 GATGTG-C--C-------GCCAAAAACAATGGCTTATCCTTGCGTCAAAAGAAACGTATC 524
|||||| | | ||||| || ||||||||||||||||||||||||||||||||
Sbjct 475 GATGTGCCGGCTTATGGTGCCAAGAA-AATGGCTTATCCTTGCGTCAAAAGAAACGTATT 533
Query 525 TTCACTTCTTCCTCTTCTCGTTCTTCTATCAATCACTCCTTTTTCATCATCTTTGTCTCC 584
||||||||||||||| ||||||||||||||| |||| ||||| || ||||||||||||||
Sbjct 534 TTCACTTCTTCCTCTACTCGTTCTTCTATCAGTCACCCCTTTGTCTTCATCTTTGTCTCC 593
Query 585 GAGTGACAAAGTCACAAACGAAACACTTAACCAACTCTGCTCAAAACCAAACATTTACAA 644
|||||||||||||||||| | | |||| ||||||||||| ||||||| |||||| |||
Sbjct 594 GAGTGACAAAGTCACAAAAGGATTACTTTACCAACTCTGCACAAAACCGAACATTGACAG 653
Query 645 CCACTTCTGCATCGCTTGGCTAACCTCTGATCCTACAACATTCACCCTCGACCTACAAGG 704
| ||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 654 CTACTTCTGCATCCCTTGGCTAAACTCTGATCCAACAACATTCACCCTCGACCTACAAGG 713
Query 705 TCTTCTCGATTCGGTTTTTCAAAAGACGCAATTGTTGGGCTATAAGAGCCTAGCGGCGAT 764
||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 714 TCTTCTCGATTTGGTCTTCCAAAAGACGCAATTGTTGGGCTATAAGAGCCTAGCGGCGAT 773
Query 765 GAAAGGCTCAGTGA-ATACCACGACTGATCCGGCGCTCAAGATCCCATTTGAGACTTGCG 823
|||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 774 GAAAGGCTCAGTGAGA-ACCACGACTGATCCGACGCTCAAGATCCCATTTGAGACTTGCG 832
Query 824 TGACGGATTATGAAGTAGCCATTAAAGCGATCGAGGAAGCTCAAGGGTTTGTGACATCTA 883
||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 833 TGAAAGATTATGAAGTAGCCATTAAAGCGATCGAGGAAGCTCAAGGGTTTGTGACCTCTA 892
Query 884 AGGCGTACGAC-TTAGCATCTCTGGGGGCAGCTAAAGCCTTCATTAGTATATCAGTGTGT 942
|||||||| | |||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 893 AGGCGTACC-CGTTAGCATCTCAAGGGGCTGCTAAAGCCTTCATTAGTATATCAGTGTGT 951
Query 943 GAAACTCAGTTTGAAGGACGGGATAATGTGCCAGTTTATGTAACGAAACTCAATATG-TT 1001
||| |||||||||||||||||| ||||||||| | ||||||| ||||||||||| | ||
Sbjct 952 GAAGCTCAGTTTGAAGGACGGGTTAATGTGCCGGATTATGTAGCGAAACTCAAT-TCATT 1010
Query 1002 TTTTAAGAGAATGTGTAACATTGATAGGGTTTTCTCCGACGTTTTGA 1048
|||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1011 TTTTAAAAGAATGTGTAACATTGATAGGGTTTTCTCCGACGTTTTGA 1057
Score = 699 bits (378), Expect = 0.0
Identities = 451/486 (93%), Gaps = 6/486 (1%)
Strand=Plus/Plus
Query 1 ATGGCTTATCCTTGCGTCAAAAGAAACGTATTTTCACTTCTTCCTCTTCTCGTTCTTCTA 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 502 ATGGCTTATCCTTGCGTCAAAAGAAACGTATTTTCACTTCTTCCTCTACTCGTTCTTCTA 561
Query 61 TCAATCACCCCTTTGTCTTCATCTTTATCTCCGAGTGACAAAATCACAAAAG-ATTTACT 119
||| |||||||||||||||||||||| ||||||||||||||| ||||||||| ||| |||
Sbjct 562 TCAGTCACCCCTTTGTCTTCATCTTTGTCTCCGAGTGACAAAGTCACAAAAGGATT-ACT 620
Query 120 TCAGCAACTCTGCGCAAGTCCGCACATTGACCACCC-CTTCTGCATCACTTGGCTAACCG 178
| | ||||||||| ||| ||| |||||||| | | |||||||||| ||||||||| |
Sbjct 621 TTACCAACTCTGCACAAAACCGAACATTGAC-AGCTACTTCTGCATCCCTTGGCTAAACT 679
Query 179 CTGATCCTACAACATTCACCCTCGACCTACAAGGTCTTCTCGATTTAGTCTTCCAAAAGA 238
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 680 CTGATCCAACAACATTCACCCTCGACCTACAAGGTCTTCTCGATTTGGTCTTCCAAAAGA 739
Query 239 CGCAATTGTTGGGCTATAAGAGCCTAGCGGCGATGAAAGGCGCAGTGAGAACCACTACTG 298
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 740 CGCAATTGTTGGGCTATAAGAGCCTAGCGGCGATGAAAGGCTCAGTGAGAACCACGACTG 799
Query 299 ATCCGACGCTCAGGA-CCTCATATGAGACTTGCGTGAGAGATTATGAAGGAGCCATTAAA 357
|||||||||||| || || ||| |||||||||||||| ||||||||||| ||||||||||
Sbjct 800 ATCCGACGCTCAAGATCC-CATTTGAGACTTGCGTGAAAGATTATGAAGTAGCCATTAAA 858
Query 358 GCGATCGAGGAAGCTCAAGGGTCTGTGACCTCTAAGGCGTACCAGTTAGCATCTCAAGGG 417
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 859 GCGATCGAGGAAGCTCAAGGGTTTGTGACCTCTAAGGCGTACCCGTTAGCATCTCAAGGG 918
Query 418 GCTGCTAAAGCCTTTGTTAGTATATCAGTGTGTGAAGCTCAGTTTGAAGGACGGGATGAT 477
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 919 GCTGCTAAAGCCTTCATTAGTATATCAGTGTGTGAAGCTCAGTTTGAAGGACGGGTTAAT 978
Query 478 GTGCCG 483
||||||
Sbjct 979 GTGCCG 984
Score = 628 bits (340), Expect = 2e-179
Identities = 444/494 (90%), Gaps = 8/494 (2%)
Strand=Plus/Plus
Query 493 ATGGCTTATCCTTGCGTCAAAAGAAACGTATCTTCACTTCTTCCTCTTCTCGTTCTTCTA 552
||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 1 ATGGCTTATCCTTGCGTCAAAAGAAACGTATTTTCACTTCTTCCTCTACTCGTTCTTCTA 60
Query 553 TCAATCACTCCTTTTTCATCATCTTTGTCTCCGAGTGACAAAGTCACAAACGAAACACTT 612
||| |||| ||||| || |||||||||||||||||||||||| ||||||| || ||||
Sbjct 61 TCAGTCACCCCTTTGTCTTCATCTTTGTCTCCGAGTGACAAAATCACAAAAGACTTACTT 120
Query 613 AACCAACTCTGCTCAAAACCAAACATTTACAACCA-CTTCTGCATCGCTTGGCTAACCTC 671
|| | |||||| || ||||||||||| || | || |||||||||| |||||||||||||
Sbjct 121 TACTACCTCTGCACAGAACCAAACATTGAC-AGCAGCTTCTGCATCCCTTGGCTAACCTC 179
Query 672 TGATCCTACAACATTCACCCTCGACCTACAAGGTCTTCTCGATTCGGTTTTTCAAAAGAC 731
|||||| ||||||||||| ||||||||||||||||||||||||| ||| || ||||||||
Sbjct 180 TGATCCAACAACATTCACTCTCGACCTACAAGGTCTTCTCGATTTGGTCTTCCAAAAGAC 239
Query 732 GCAATTGTTGGGCTATAAGAGCCTAGCGGCGATGAAAGGCTCAGTGA-ATACCACGACTG 790
||||||||||||||||||||||||||||||||||||||||||||||| | |||| | |||
Sbjct 240 GCAATTGTTGGGCTATAAGAGCCTAGCGGCGATGAAAGGCTCAGTGAGA-ACCATGCCTG 298
Query 791 ATCCGGCGCTCAAGATCCCATTTGAGACTTGCGTGACGGATTATGAAGT-AGCCATTAAA 849
| || |||||||||||||||||||||||||||||| ||||||||| | ||||||||||
Sbjct 299 GTTCGACGCTCAAGATCCCATTTGAGACTTGCGTGAAAGATTATGAA-TCAGCCATTAAA 357
Query 850 GCGATCGAGGAAGCTCAAGGGTTTGTGACATCTAAGGCGTACGAC-TTAGCATCTCTGGG 908
||||||||||||||||||||||| |||| ||||||||||||| | |||||||||| ||
Sbjct 358 TCGATCGAGGAAGCTCAAGGGTTTCTGACCTCTAAGGCGTACG-CGTTAGCATCTCAAGG 416
Query 909 GGCAGCTAAAGCCTTCATTAGTATATCAGTGTGTGAAACTCAGTTTGAAGGACGGGATAA 968
||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| | |
Sbjct 417 GGCTGCTAAAGCCTTCATTAGTATATCAGTGTGTGAAGCTCAGTTTGAAGGACGGGCTGA 476
Query 969 TGTGCCAGTTTATG 982
|||||| | |||||
Sbjct 477 TGTGCCGGCTTATG 490
> Ahg931265 jgi|Araly1|931265|scaffold_303722.1
Length=604
Score = 274 bits (148), Expect = 1e-72
Identities = 380/488 (78%), Gaps = 32/488 (7%)
Strand=Plus/Plus
Query 1 ATGGCTTATCCTTGCGTCAAAAGAAACGTATTTTCACTTCTTCCTCTTCTCGTTCTTCTA 60
||||||| | |||| |||| |||| | |||||||| ||||||||||||||||| |||||
Sbjct 21 ATGGCTTGTTCTTGTGTCATAAGACATATATTTTCAATTCTTCCTCTTCTCGTTATTCTA 80
Query 61 TCAATCACCCCTTTGTCTTCATCTTTAT-CTCCGAGTGACAAAATCACAAAAGATTTACT 119
||||||||||||||||||||||||| || || | |||||||||||||||||| ||| |
Sbjct 81 TCAATCACCCCTTTGTCTTCATCTT-ATTCTATAAATGACAAAATCACAAAAGAATTAAT 139
Query 120 TCAGC-AACTCTGCGCA-AGTCCGCACA-TTGACCACCCCTTCTGCATCACTTGGCTAAC 176
|| | |||||||| || | ||| ||| || || ||| ||||| || ||||| ||||
Sbjct 140 -CAACCAACTCTGCTCACAA-CCG-ACAATTTACAACCATTTCTGTGTCGCTTGGGTAAC 196
Query 177 CGCTGATC-CTACAA-CATTCACCCTCGACCTACAAGGTCTTCTCGATTTAG-TCT-TCC 232
| ||| || | |||| | |||| ||| ||||| ||||||||| || || | | ||| ||
Sbjct 197 CTCTG-TCGC-ACAAACGTTCAACCTTGACCTGCAAGGTCTTGTCTATCT-GCTCTATC- 252
Query 233 AAAAGACGCAATTGTTGGGCTATAAGAGCCTAGCGGCGATGAAAGGCGCAGTGAGAACC- 291
|||||||| |||||||||||| ||||| ||||| | ||| |||| | || |||||||
Sbjct 253 AAAAGACGGAATTGTTGGGCTCTAAGAACCTAGAGATGATTAAAGACTTAGAGAGAACCG 312
Query 292 ACTACTGATCCGACGCTCAGGA-CCTCATATGAGACTTGCGTGAGAGATTATGAAGGAGC 350
| ||||| || | ||||| || || |||||| | |||| |||| ||| |||||| | |
Sbjct 313 AG-ACTGAGCCAAAGCTCAAGATCC-CATATGGGTCTTGTGTGAAAGAATATGAATTATC 370
Query 351 CATTAAAGCGATCGAGGAAGCTCAAGGGTCTGTGA---C---CTCTAAGGCGTACCAGTT 404
| || ||| |||||||||||| ||| || || || | ||| ||||| |||| ||
Sbjct 371 GAATAGAGCAATCGAGGAAGCTAAAGAGTTTGCGAGTGCGAACTCGAAGGCATACCTGTC 430
Query 405 AGCATCTCAAGG-GGCTGCTAAAGCCTTTGTTAGTATATC-AGTGTGTGAAGCTCAGT-T 461
||||||| |||| |||| ||| |||||| | ||||||||| | |||| |||||| | | |
Sbjct 431 AGCATCT-AAGGCGGCTTCTAGAGCCTTCGATAGTATATCTA-TGTGCGAAGCTTA-TCT 487
Query 462 TGAAGGAC 469
||||||||
Sbjct 488 TGAAGGAC 495
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39304727427
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5