BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G17240.1
Length=1919
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929571 jgi|Araly1|929571|scaffold_302028.1 2627 0.0
Ahg473938 jgi|Araly1|473938|fgenesh2_kg.1__3892__AT1G48030.2 1555 0.0
> Ahg929571 jgi|Araly1|929571|scaffold_302028.1
Length=1604
Score = 2627 bits (1422), Expect = 0.0
Identities = 1541/1598 (96%), Gaps = 9/1598 (1%)
Strand=Plus/Plus
Query 68 aacaacaacaacaaTAACGATGGCGATGGCGAGCTTAGCTAGGAGAAAAGCGTACTTTCT 127
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 8 AACAA-AACAACAACAACGATGGCGATGGCGAGCTTAGCTAGGAGAAAAGCGTACTTTCT 66
Query 128 CACCAGAAACATCTCTAATTCTCCCACTGATGCTTTCAGATTCTCTTTCTCCCTCACTCG 187
||||||||||||||| |||||||||||||| ||| ||||||||||| |||||||||||||
Sbjct 67 CACCAGAAACATCTCCAATTCTCCCACTGACGCTCTCAGATTCTCTCTCTCCCTCACTCG 126
Query 188 CGGCTTCGCTTCGTCAGGATCCGACGACAACGACGTCGTCATCATCGGCGGCGGTCCTGG 247
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 127 CGGCTTCGCTTCGTCGGGATCCGACGACAACGACGTCGTCATCATCGGCGGCGGTCCTGG 186
Query 248 AGGTTATGTGGCGGCGATTAAAGCGGCACAGCTCGGTCTTAAGACTACCTGTATCGAAAA 307
||| ||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||
Sbjct 187 AGGATATGTGGCGGCGATTAAGGCGGCACAGCTCGGTCTCAAGACAACCTGTATCGAAAA 246
Query 308 GCGAGGCGCTCTCGGTGGTACTTGTCTTAACGTCGGCTGTATTCCTTCAAAGGCCCTTCT 367
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 247 GCGCGGCGCTCTCGGTGGTACTTGTCTTAACGTCGGCTGTATTCCTTCAAAGGCCCTTCT 306
Query 368 TCACTCTTCTCACATGTACCATGAAGCAAAGCACGTTTTTGCTAACCATGGTGTTAAGGT 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 307 TCACTCTTCTCACATGTACCATGAAGCAAAGCACGTTTTTGCTAACCATGGTGTTAAGGT 366
Query 428 CTCTTCGGTTGAGGTAGATCTTCCTGCTATGTTGGCGCAGAAAGACACAGCCGTCAAGAA 487
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 367 TTCTTCAGTTGAGGTAGATCTTCCTGCTATGTTGGCTCAGAAAGACACAGCCGTCAAGAA 426
Query 488 TTTAACCCGTGGAGTCGAAGGTCTGTTCAAGAAGAACAAGGTAAACTATGTTAAGGGCTA 547
| | |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 427 TCTCACCCGTGGTGTCGAAGGTCTTTTCAAGAAGAACAAGGTAAACTATGTTAAGGGCTA 486
Query 548 TGGTAAGTTTCTGTCCCCATCGGAAGTCTCTGTGGACACAATCGATGGAGAAAACGTGGT 607
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 487 CGGTAAGTTTCTGTCCCCATCAGAAGTCTCTGTGGACACAATCGATGGAGAAAACTTGGT 546
Query 608 TGTGAAAGGCAAACATATCATAGTTGCAACTGGCTCGGATGTCAAGTCTTTGCCTGGAAT 667
||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 547 TGTCAAAGGCAAACATATCATAGTTGCAACTGGCTCGGATGTCAAGTCTTTGCCAGGCAT 606
Query 668 CACCATCGATGAAAAGAAGATTGTCTCATCAACCGGGGCACTGTCTCTGACAGAGATCCC 727
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 607 CACCATCGATGAAAAGAAGATTGTCTCATCAACTGGGGCACTGTCTCTGACAGAAATCCC 666
Query 728 AAAGAAACTCATTGTCATTGGTGCTGGCTATATTGGGCTAGAGATGGGTTCTGTATGGGG 787
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 667 AAAGAAACTCATTGTCATTGGTGCTGGCTATATTGGGCTCGAGATGGGTTCTGTATGGGG 726
Query 788 ACGGCTAGGATCAGAGGTCACAGTTGTTGAGTTTGCAGCGGATATCGTACCAGCAATGGA 847
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 727 ACGGCTCGGATCAGAGGTCACAGTTGTTGAGTTTGCAGCGGATATCGTACCAGCAATGGA 786
Query 848 TGGTGAAATCCGCAAGCAGTTTCAACGCTCACTAGAGAAGCAGAAGATGAAATTTATGCT 907
||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||
Sbjct 787 TGGTGAAATCCGCAAGCAGTTTCAACGTTCACTAGAGAAGCAAAAGATGAAATTCATGCT 846
Query 908 CAAAACTAAAGTCGTTGGGGTAGATTCATCTGGAGATGGTGTTAAACTCATAGTGGAACC 967
||| ||||||||||| || ||||||||||||||||||||||| |||||||||||||||||
Sbjct 847 CAAGACTAAAGTCGTCGGCGTAGATTCATCTGGAGATGGTGTGAAACTCATAGTGGAACC 906
Query 968 TGCTGAAGGTGGAGAACAGACCACTCTAGAAGCTGATGTGGTCCTCGTCTCAGCTGGTAG 1027
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 907 TGCTGAAGGTGGAGAGCAGACCACTCTAGAAGCTGATGTGGTCCTCGTCTCAGCTGGTAG 966
Query 1028 AACTCCGTTCACATCTGGACTTGATCTAGAGAAAATCGGAGTTGAGACAGACAAAGGCGG 1087
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 967 AACTCCGTTCACATCTGGACTTGATCTAGAGAAAATCGGAGTTGAGACAGACAAAGGCGG 1026
Query 1088 GAGAATTCTGGTGAACGAGAGATTCTCGACAAATGTTTCAGGCGTTTATGCAATTGGAGA 1147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1027 GAGAATTCTGGTGAACGAGAGATTCTCGACAAATGTTTCAGGCGTTTATGCAATTGGAGA 1086
Query 1148 TGTGATTCCAGGACCAATGCTGGCTCACAAAGCCGAAGAAGATGGTGTTGCATGTGTTGA 1207
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1087 TGTGATTCCAGGACCAATGCTGGCTCACAAAGCCGAAGAAGATGGTGTCGCATGTGTTGA 1146
Query 1208 GTTTATAGCAGGCAAACACGGGCATGTGGATTACGACAAAGTCCCTGGGGTTGTCTACAC 1267
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1147 GTTTATAGCAGGCAAACACGGTCATGTGGATTACGACAAAGTCCCTGGGGTTGTCTACAC 1206
Query 1268 GTACCCTGAAGTTGCGTCGGTTGGTAAAACCGAGGAGCAGCTGAAGAAAGAAGGTGTAAG 1327
||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1207 GTACCCTGAAGTTGCCTCAGTTGGTAAAACCGAGGAGCAGCTGAAGAAAGACGGTGTAAG 1266
Query 1328 CTACAATGTTGGAAAATTCCCATTCATGGCCAATAGCAGAGCCAAGGCCATAGACACAGC 1387
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1267 CTACAATGTCGGAAAATTCCCATTCATGGCCAATAGCAGAGCCAAGGCCATAGACACAGT 1326
Query 1388 AGAGGGAATGGTCAAGATTTTGGCTGATAAAGAGACAGACAAGATCTTGGGAGTTCACAT 1447
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1327 AGAGGGACTGGTCAAGATTTTGGCTGATAAAGAGACAGACAAGATCTTGGGAGTTCACAT 1386
Query 1448 TATGTCACCAAACGCAGGAGAATTGATCCATGAGGCGGTTCTAGCTATCAACTATGATGC 1507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1387 TATGTCACCAAACGCAGGAGAATTGATCCATGAGGCGGTTCTAGCTATCAACTATGATGC 1446
Query 1508 ATCAAGTGAAGACATTGCTCGAGTCTGTCACGCTCATCCCACCATGAGTGAGGCTATCAA 1567
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1447 ATCAAGCGAAGACATTGCTCGAGTCTGTCACGCTCATCCCACCATGAGTGAGGCTATCAA 1506
Query 1568 GGAAGCTGCCATGGCTACCTATGACAAGCCCATTCACATGTAGAAGCCCTCAGG-AGATG 1626
||||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||
Sbjct 1507 GGAAGCTGCCATGGCTACCTATGACAAGCCCATTCACATGTAGAAGCTCTCAGGTATATC 1566
Query 1627 -TGGA--T-TG-A--GAGGGAGAAGGAAGTAAAGCCGC 1657
|||| | || | |||||||||||||||||||||||
Sbjct 1567 ATGGAGATGTGGATTGAGGGAGAAGGAAGTAAAGCCGC 1604
> Ahg473938 jgi|Araly1|473938|fgenesh2_kg.1__3892__AT1G48030.2
Length=1709
Score = 1555 bits (842), Expect = 0.0
Identities = 1312/1540 (85%), Gaps = 27/1540 (2%)
Strand=Plus/Plus
Query 87 ATGGCGATGGCGAGCTTAGCTAGGAGAAAAGCGTACTTTCTCACCAGAAACATCTCTAAT 146
|||||||||||||||||||||||||| || ||||||||||||||||||||| | || ||
Sbjct 1 ATGGCGATGGCGAGCTTAGCTAGGAGGAAGGCGTACTTTCTCACCAGAAACTTATCCAAC 60
Query 147 TCTCCCACTGATGCTTTCAGATTCTCTTTCTCCCTCACTCGCGGCTTCGCTTCGTCAGGA 206
||||||||||| ||| |||||||||| ||||||||| | || |||||||| || ||||||
Sbjct 61 TCTCCCACTGACGCTCTCAGATTCTCCTTCTCCCTCTCCCGTGGCTTCGCCTCATCAGGA 120
Query 207 TCCGACGACAACGACGTCGTCATCATCGGCGGCGGTCCTGGAGGTTATGTGGCGGCGATT 266
|| || || ||||||||||||||||||||||||||||| || ||||| || || |||||
Sbjct 121 TCTGATGAAAACGACGTCGTCATCATCGGCGGCGGTCCCGGTGGTTACGTAGCCGCGATC 180
Query 267 AAAGCGGCACAGCTCGGTCTTAAGACTACCTGTATCGA-AAAGCGAGGCGCTCTCGGTGG 325
|||||||| ||||| ||||| || || ||||||||||| ||| || ||||||||||||||
Sbjct 181 AAAGCGGCTCAGCTTGGTCTCAAAACCACCTGTATCGAGAAA-CGCGGCGCTCTCGGTGG 239
Query 326 TACTTGTCTTAACGTCGGCTGTATTCCTTCAAAGGCCCTTCTTCACTCTTCTCACATGTA 385
|||||||||||||||||| || |||||||| ||||| |||||||||||||| || |||||
Sbjct 240 TACTTGTCTTAACGTCGGGTGCATTCCTTCGAAGGCTCTTCTTCACTCTTCACATATGTA 299
Query 386 CCATGAAGC-AAAGCACGTTTTTGCTAACCATGGTGTTAAGGTCTCTTCGGTTGAGGTAG 444
|||||| || ||| || | || || ||||||||| |||||||||||||||||||||| |
Sbjct 300 CCATGAGGCGAAA-CATGCGTTCGCCAACCATGGTATTAAGGTCTCTTCGGTTGAGGTGG 358
Query 445 ATCTTCCTGCTATGTTGGCGCAGAAAGACACA-GCCGTCAAGAA-TTTAACCCGTGG-AG 501
|||||||||||||||| || |||||||| | | || || ||||| || || ||||| |
Sbjct 359 ATCTTCCTGCTATGTTAGCTCAGAAAGATA-ATGCGGTTAAGAACCTT-ACTCGTGGTA- 415
Query 502 TCGAAGGTCTGTTCAAGAAGAACAAGGTAAAC-TATGTTAAGGGCTATGGTAAGTTTCTG 560
|||||||| ||||||||||||| ||||| || ||||||||||| |||||||||||| |
Sbjct 416 TCGAAGGTTTGTTCAAGAAGAATAAGGT-GACTTATGTTAAGGGATATGGTAAGTTTATT 474
Query 561 TCCCCATCGGAAGTCTCTGTGGACACAATCGATGGAGAAAACGTGGTTGTGAAAGGCAAA 620
|| ||| |||||||| ||||| || |||||||||| ||| ||||||||||| |||
Sbjct 475 TCACCAAATGAAGTCTCGGTGGAGACGATCGATGGAGGGAACACCGTTGTGAAAGGTAAA 534
Query 621 CATATCATAGTTGCAACTGGCTCGGATGTCAAGTCTTTGCCTGGAATCACCATCGATGAA 680
|| ||||| ||||| |||||||||||||| |||||||||||||| || || || ||||||
Sbjct 535 CACATCATTGTTGCTACTGGCTCGGATGTTAAGTCTTTGCCTGGTATTACGATTGATGAA 594
Query 681 AAGAAGATTGTCTCATCAACCGGGGCACTGTCTCTGACAG-AGATCCCAAAGAAACTCAT 739
||||||||||| || || || || || |||||||| | | || |||| |||||| | ||
Sbjct 595 AAGAAGATTGTTTCGTCGACTGGAGCGTTGTCTCTGTCGGAAG-TCCCGAAGAAATTGAT 653
Query 740 TGTCATTGGTGCTGGCTATATTGGGCTAGAGATGGGTTCTGTATGGGG-ACGGCTAGGAT 798
||| |||||||| || ||||||||||| |||||||||||||| ||||| | |||| ||
Sbjct 654 TGTGATTGGTGCGGGGTATATTGGGCTTGAGATGGGTTCTGTTTGGGGTA-GGCTTGGGG 712
Query 799 CAGAGGTCACAGTTGTTGAGTTTGCAGCGGATATCGTACCAGCAATGGATGGTGAAATCC 858
||||||| || || ||||||||||| | ||||||||| || | ||||||||||||||||
Sbjct 713 CAGAGGTTACGGTAGTTGAGTTTGCTGGGGATATCGTTCCTTCGATGGATGGTGAAATCC 772
Query 859 GCAAGCAGTTTCAACGCTCACTAGAGAAGCAGAAGATGAAATTTATGCTCAAAACTAAAG 918
| |||||||||||||| ||||| |||||||| |||||||| || |||||||| |||||||
Sbjct 773 GTAAGCAGTTTCAACGTTCACTTGAGAAGCAAAAGATGAAGTTCATGCTCAAGACTAAAG 832
Query 919 TCGT-TGGGGTAGATTCAT-CTGGAGATGGTGTTAAACTCATAGTGGAACCTGCTGAAGG 976
| || | || ||||| | || || ||||| || || | ||||||||| || |||||
Sbjct 833 TTGTAT-CTGTGGATTCCTCCT-CTGACGGTGTGAAGCTTACAGTGGAACCGGCAGAAGG 890
Query 977 TGGAGAACAGACCACTCTAGAAGCTGATGTGGTCCTCGTCTCAGCTGGTAGAACTCCGTT 1036
||||| ||||| | ||| ||||| ||||| || || |||||||| || ||||| |||||
Sbjct 891 AGGAGAGCAGACTATTCTGGAAGCCGATGTTGTGCTTGTCTCAGCAGGAAGAACACCGTT 950
Query 1037 CACATCTGGACTTGATCTAGAGAAAATCGGAGTTGAGACAGACAAAGGC-GGGAGAATTC 1095
|||||||||||||||||| |||||||||||||| || || |||||| || ||||| ||||
Sbjct 951 CACATCTGGACTTGATCTGGAGAAAATCGGAGTAGAAACTGACAAA-GCTGGGAGGATTC 1009
Query 1096 TGGTGAACGAGAGATTCTCGA-CAAATGTTTCAGGCGTTTATGCAATTGGAGATGTGATT 1154
||||||| |||||||||| || | ||||| ||||||| ||||| |||||||||||||||
Sbjct 1010 TGGTGAATGAGAGATTCTTGAGC-AATGTCCCAGGCGTGTATGCTATTGGAGATGTGATT 1068
Query 1155 CCAGGACCAATGCTGGCTCACAAAGCCGAAGAAGATGGTGTTGCATGTGTTGAGTTTATA 1214
|||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||| |||
Sbjct 1069 CCAGGACCAATGCTTGCTCACAAAGCCGAAGAAGATGGTGTTGCTTGTGTGGAGTTCATA 1128
Query 1215 GCAGGCAAACACGGGCATGTGGATTACGACAAAGTCCCTGGGGTTGTCTACACGTACCCT 1274
|||||||||||||| ||||||||||| ||||| || ||||| |||||||||||| | |||
Sbjct 1129 GCAGGCAAACACGGCCATGTGGATTATGACAAGGTTCCTGGTGTTGTCTACACGCATCCT 1188
Query 1275 GAAGTTGCGTCGGTTGGTAAAACCGAGGAGCAGCTGAAGAAAGAAGGTGTAAGCTACAAT 1334
|| ||||| ||||||||||||||||| || |||||||||||||||||||| || |||
Sbjct 1189 GAGGTTGCTTCGGTTGGTAAAACCGAAGAACAGCTGAAGAAAGAAGGTGTGAGTTACCGG 1248
Query 1335 GTTGGAAAATTCCCATTCATGGCCAATAGCAGAGCCAAGGCCATAGACACA-GCAGAGGG 1393
| ||||||||||||||| ||||| ||||||||||| |||||||| || | | ||||| ||
Sbjct 1249 GCTGGAAAATTCCCATTTATGGCAAATAGCAGAGCGAAGGCCATTGATA-ATGCAGAAGG 1307
Query 1394 AATGGTCAAGATTTTGGCTGATAAAGAGACAGACAAGATCTTGGGAGTTCACATTATGTC 1453
| |||| |||||| |||||||||| ||||| || ||||||||||| ||||||||||||||
Sbjct 1308 ATTGGTTAAGATTCTGGCTGATAAGGAGACCGATAAGATCTTGGGCGTTCACATTATGTC 1367
Query 1454 ACCAAACGCAGGAGAATTGATCCATGAGGCGGTTCTAGCTATCAACTATGATGCATCAAG 1513
|||||||| ||||| |||| |||||||||||||| || || ||||| |||||||||||
Sbjct 1368 TCCAAACGCTGGAGAGCTGATTCATGAGGCGGTTCTTGCGATTAACTACGATGCATCAAG 1427
Query 1514 TGAAGACATTGCTCGAGTCTGTCACGCTCATCCCACCATGAGTGAGGCTATCAAGGAAGC 1573
|||||||||||||||||||||||||||||||||||| ||||| |||||| | ||||||||
Sbjct 1428 TGAAGACATTGCTCGAGTCTGTCACGCTCATCCCACTATGAGCGAGGCTCTGAAGGAAGC 1487
Query 1574 TGCCATGGCTACCTATGACAAGCCCATTCACATGTAGAAG 1613
|||||||| || |||||||||||||||||||| || |||
Sbjct 1488 CGCCATGGCCACATATGACAAGCCCATTCACATCTA-AAG 1526
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72104833785
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5