BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G17250.1
Length=1603
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479200 jgi|Araly1|479200|fgenesh2_kg.3__1901__AT3G17250.1 2152 0.0
> Ahg479200 jgi|Araly1|479200|fgenesh2_kg.3__1901__AT3G17250.1
Length=1536
Score = 2152 bits (1165), Expect = 0.0
Identities = 1355/1447 (94%), Gaps = 11/1447 (1%)
Strand=Plus/Plus
Query 1 GTAATTTATCCAAAATTAAAATGCGTACAAGCAAAGCTTCAGTGACCCAAACATGGCTGC 60
|||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct 1 GTAATTTATCCAAAATTAAAATGCGTCCAAGCAAAGCTTCAGTGACTCAAACATGGCTGC 60
Query 61 TTTACACACAGCTTTGTCTTTGGAAAGATCTCATAATCCGCTATGTCCGTCAGATCATAA 120
|||||| ||||||||||||||||||||||||| ||||| ||| |||||||||| ||||||
Sbjct 61 TTTACAGACAGCTTTGTCTTTGGAAAGATCTCTTAATCAGCTTTGTCCGTCAGTTCATAA 120
Query 121 GAAGAGCAAAATCGATGCTTTTCAGTCAAAACATGGTCGCTGATTCCGCCGAGATCAGTG 180
|||||||||||||||||||||| ||||| ||||||||||||||||| || ||||||||||
Sbjct 121 GAAGAGCAAAATCGATGCTTTTGAGTCATAACATGGTCGCTGATTCTGCTGAGATCAGTG 180
Query 181 TTATCGATGTCAAGTCTCATCTCTCCGTTGCGAAAGATCCTAGTAACTTTCAGATTGCCG 240
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 181 TTATCGATGTCAAGTCTCATCTCTCCGTTGGGAAAGATCCTAGTAACTTTCAGATTGCTG 240
Query 241 AAATTCGAATTCATGATTCAATTTGTATTGATATTCCGAGCTCTGAAGAAACGCCTCTTT 300
|||||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||
Sbjct 241 AAATTCGAATTCATGATTCAATCTGTATTGAGATTCCGGGCTCTGAAGAAACGCCTCTTT 300
Query 301 TAGAATCGATCAAGAGTTGTTCTGCAACT---AC---TATTGAAGAGCATGTTACTGAGT 354
||| |||| ||||||||||||||||| || || | ||||||||| |||||||||||
Sbjct 301 TAGGATCGGTCAAGAGTTGTTCTGCAGCTGCAACGATTGTTGAAGAGCCTGTTACTGAGT 360
Query 355 TTGTACCAAATATAAGCTCAGGGAGTTATGCAGATAAGGGTGACTACCGGGAGTACATGG 414
|||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 361 TTGTCCCAAATATAAGCTCTGGGAGTTATGCGGATAAGGGTGACTACCGGGAGTACATGG 420
Query 415 AAGATGAACACATATGCATAGACGACCTTTCAGATCATCTTGGGTCTTCCTTTTACAGAT 474
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 421 AAGATGAACACATATGCATAGACGACCTTTCAGATCATCTTGGGTCCTCCTTCTACAGAT 480
Query 475 TTCCGGTGCCTATGGCTTTCTACGGTGTGTTTGATGGCCATGGTGGATCTGACGCATCAC 534
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 481 TTCCGGTGCCTATCGCTTTCTACGGTGTGTTTGATGGCCATGGTGGATCTGAGGCATCAC 540
Query 535 AGTATATAAAAGAGAATGCTATGAGCTTGTTCTTTGAAGATGCTGTTTTTCGACAATCGC 594
||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||
Sbjct 541 AGTATATAAAAGAGAATGCAATGAGATTGTTCTTTGAAGATGCTGTTTTTCGAGAATCGC 600
Query 595 CCTCTGTTGTGGACTCTCTTTTCTTGAAAGAACTGGAGACATCTCACCGGGAAGCTTATA 654
|||| ||||||||| || ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 601 CCTCCGTTGTGGACACTTTTTTCTTGAAAGAACTGGAGAAATCTCACCGGGAAGCTTATA 660
Query 655 GGCTTGCTGATCTTGCAATGGAGGACGAAAGAATAGTTAGTAGTTCGTGCGGAACAACCG 714
||||||||||||| || ||||| || ||||||||||||||||||||||||||||||||||
Sbjct 661 GGCTTGCTGATCTCGCCATGGATGATGAAAGAATAGTTAGTAGTTCGTGCGGAACAACCG 720
Query 715 CATTGACTGCTCTTGTAATCGGAAGACATTTAATGGTCGCTAATGTTGGTGATTGTCGTG 774
||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 721 CATTGACCGCTCTTGTAATCGGAAGACATTTAATGGTCGCTAATGCTGGCGATTGTCGTG 780
Query 775 CGGTGCTCTGCAGAAAAGGAAAAGCTGTTGATATGTCATTTGATCACAAATCTACATTTG 834
| |||||||| || |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 781 CAGTGCTCTGTAGGAAAGGAAAGGCTGTTGATATGTCATTTGATCACAAATCTACATTTG 840
Query 835 AGCCAGAACGGAGACGAGTAGAGGATTTAGGAGGGTACTTTGAAGGCGAGTATCTCTATG 894
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 841 AGCCAGAACGGAGACGGGTAGAGGATTTAGGAGGGTACTTTGAAGGCGAGTATCTCTACG 900
Query 895 GTGACCTTGCTGTTACAAGAGCTCTTGGAGACTGGTCAATAAAGAGGTTTTCACCCCTTG 954
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 GTGACCTTGCTGTGACAAGAGCTCTTGGAGACTGGTCAATAAAGAGGTTTTCACCCCTTG 960
Query 955 GTGAATCTTTGTCACCTCTGATCTCAGACCCGGACATTCAACAGATGATTCTAACTGAGG 1014
||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 961 GTGGATCTTTCTCACCTCTGATCTCAGACCCGGACATTCAACAGATGATTCTAACCGAGG 1020
Query 1015 AAGACGAGTTCTTGATTATGGGATGTGACGGTGTTTGGGACGTGATGACAAGCCAGTATG 1074
||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 1021 AAGACGAATTCTTGATTATGGGATGTGACGGTGTTTGGGATGTGATGACAAGTCAGTATG 1080
Query 1075 CTGTTACTTTCGTCAGGCAAGGACTTAGGAGACACGGTGATCCTAGAAGGTGCGCTATGG 1134
|||| |||||||||||||||||||| |||||||| ||||| || |||||||||||| |||
Sbjct 1081 CTGTCACTTTCGTCAGGCAAGGACTCAGGAGACAAGGTGACCCAAGAAGGTGCGCTCTGG 1140
Query 1135 AACTTGGAAGGGAAGCGTTAAGGCTAGACTCATCAGATAACGTTACAGTGGTGGTCATCT 1194
| || |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 1141 AGCTCGGAAGGGAAGCGTTGAGGCTAGACTCATCAGATAACGTTACAGTGGTGATCATCT 1200
Query 1195 GCTTCTCATCATCCCCAGCTCCTCAGAGAAGAAGGATACGGTTCTGTGTTTCCGATGAAG 1254
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1201 GCTTCTCATCATCACCAGCTCCTCAGAGAAGAAGAATACGGTTCTGTGTTTCCGATGAAG 1260
Query 1255 CTCGAGCCCGGTTACAGACAATGCTAGAAGGCTAACTGATGAAGGTTTTTTAGCGGTCTT 1314
| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 1261 CCCGAGCCCGGTTACAGACAATGCTAGAAGGCTAACTGATGAAGGTTTTTGAGCTGTCTT 1320
Query 1315 GAGGAGGGCACAATGTATATATTATAGCAACAAAGATGGGGTTTTGAGAT---A-ACAAC 1370
|||||||| |||||||||||||||| |||||| |||||| |||||| | | | |||
Sbjct 1321 GAGGAGGGGACAATGTATATATTATTGCAACAGAGATGGA-TTTTGACTTTTGAGATAAC 1379
Query 1371 CCTCCCAAGGCCAAATTATTTGATGACATTATTACATCTCTCTGATATTGGATGAAATAA 1430
||| |||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 1380 CCTGCCAAGGCCAAATGATTTGATGACATTATCACATCTCTCTGATATCGGATGAAATAA 1439
Query 1431 AAGGAAG 1437
|||||||
Sbjct 1440 AAGGAAG 1446
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60068316365
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5